View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2761_high_15 (Length: 405)
Name: NF2761_high_15
Description: NF2761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2761_high_15 |
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| [»] scaffold0036 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 149; Significance: 1e-78; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 74 - 314
Target Start/End: Complemental strand, 3083289 - 3083050
Alignment:
| Q |
74 |
gtagccattgttttctcaaagaaaatgcagtcaaatagctacttaaaatcgtgaggtaagcaacctttaatgctcaaaccaagtgaaagttcctcatgca |
173 |
Q |
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||||||||||||| |||| ||| |||||||| ||||||||||| ||||| ||||||||| |||||||||| |||||||||| |||||||||||| |||| |
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| T |
3083289 |
gtagccattgtttgctcagagagaatgcagttaaatagctactataaatc-tgaggtaagtaacctttaattctcaaaccaaatgaaagttcctcttgca |
3083191 |
T |
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| Q |
174 |
taagatgtagttattccaattaaggcttgtgcacatgtatgttaactccaatagcagtctcctcattctcagtccctaaatgaataaagcagtacaccag |
273 |
Q |
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|||||||||| | |||||||||| | |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||| |
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| T |
3083190 |
taagatgtagctgttccaattaaagtttgtgcacatgtatgttaactccaatagcagtttcctcattctccacccctaaatgaataaagcagaacaccaa |
3083091 |
T |
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| Q |
274 |
aaattggacatccttgtaagtaacaaacctgctgccttaca |
314 |
Q |
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||||||||||||||||||||||||||||| ||||||||||| |
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| T |
3083090 |
aaattggacatccttgtaagtaacaaaccagctgccttaca |
3083050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 74 - 314
Target Start/End: Complemental strand, 38404072 - 38403845
Alignment:
| Q |
74 |
gtagccattgttttctcaaagaaaatgcagtcaaatagctacttaaaatcgtgaggtaagcaacctttaatgctcaaaccaagtgaaagttcctcatgca |
173 |
Q |
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||||||||||||| |||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||| || | |
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| T |
38404072 |
gtagccattgtttgctcagagagaatgcagtcaaatagctacttaaaatcctgaggtaagcaacctttaatgctcaacctaagtgaaagtagctgcaact |
38403973 |
T |
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| Q |
174 |
taagatgtagttattccaattaaggcttgtgcacatgtatgttaactccaatagcagtctcctcattctcagtccctaaatgaataaagcagtacaccag |
273 |
Q |
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| T |
38403972 |
taagatgtagttattacaattaaagtttgtg----------ttaactccaatggcagtctcctcattctcagcccctaaatgaataaagc---acaccaa |
38403886 |
T |
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| Q |
274 |
aaattggacatccttgtaagtaacaaacctgctgccttaca |
314 |
Q |
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| T |
38403885 |
aaattggacatcattgtaagtaataaacctgctgccttaca |
38403845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 38404206 - 38404139
Alignment:
| Q |
1 |
caataattacttttcaatttcaatcaattcaaacaaagtaagaaacacaaaaattatcacgttaattt |
68 |
Q |
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||||||| |||||||||||||||||||||||||||||| |||||||| ||||||| ||| |||||||| |
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| T |
38404206 |
caataatcacttttcaatttcaatcaattcaaacaaagaaagaaacaaaaaaattctcaagttaattt |
38404139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 141; Significance: 8e-74; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 74 - 302
Target Start/End: Complemental strand, 40910038 - 40909811
Alignment:
| Q |
74 |
gtagccattgttttctcaaagaaaatgcagtcaaatagctacttaaaatcgtgaggtaagcaacctttaatgctcaaaccaagtgaaagttcctcatgca |
173 |
Q |
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||||||||||||| |||| ||| |||||||| ||||||||||| ||||| ||||||||| |||||||||| |||||||||| |||||||||||| |||| |
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| T |
40910038 |
gtagccattgtttgctcagagagaatgcagttaaatagctactataaatc-tgaggtaagtaacctttaattctcaaaccaaatgaaagttcctcttgca |
40909940 |
T |
|
| Q |
174 |
taagatgtagttattccaattaaggcttgtgcacatgtatgttaactccaatagcagtctcctcattctcagtccctaaatgaataaagcagtacaccag |
273 |
Q |
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|||||||||| | |||||||||| | |||||||||||||||||||||||||||||||| |||| |||||| | ||||||||||||||||||| |||||| |
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| T |
40909939 |
taagatgtagctgttccaattaaagtttgtgcacatgtatgttaactccaatagcagtttccttattctccgcccctaaatgaataaagcagaacaccaa |
40909840 |
T |
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| Q |
274 |
aaattggacatccttgtaagtaacaaacc |
302 |
Q |
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| T |
40909839 |
aaattggacatccttgtaagtaacaaacc |
40909811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 251 - 318
Target Start/End: Complemental strand, 33814092 - 33814025
Alignment:
| Q |
251 |
aaatgaataaagcagtacaccagaaattggacatccttgtaagtaacaaacctgctgccttacatacc |
318 |
Q |
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||||||||||||||| |||||| |||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
33814092 |
aaatgaataaagcagcacaccaaaaattgaacatccttgtaagtaacaaacctgctgccttacatacc |
33814025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 33814180 - 33814113
Alignment:
| Q |
1 |
caataattacttttcaatttcaatcaattcaaacaaagtaagaaacacaaaaattatcacgttaattt |
68 |
Q |
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||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
33814180 |
caataatcacttttcaatttcaatcaattcaaacaaaggaagaaacacaaaaattatcaagttaattt |
33814113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 251 - 318
Target Start/End: Complemental strand, 33873562 - 33873495
Alignment:
| Q |
251 |
aaatgaataaagcagtacaccagaaattggacatccttgtaagtaacaaacctgctgccttacatacc |
318 |
Q |
| |
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||||||||||||||| |||||| |||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
33873562 |
aaatgaataaagcagcacaccaaaaattgaacatccttgtaagtaacaaacctgctgccttacatacc |
33873495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 33873650 - 33873583
Alignment:
| Q |
1 |
caataattacttttcaatttcaatcaattcaaacaaagtaagaaacacaaaaattatcacgttaattt |
68 |
Q |
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||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
33873650 |
caataatcacttttcaatttcaatcaattcaaacaaaggaagaaacacaaaaattatcaagttaattt |
33873583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 112; Significance: 2e-56; HSPs: 2)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 74 - 314
Target Start/End: Complemental strand, 99662 - 99435
Alignment:
| Q |
74 |
gtagccattgttttctcaaagaaaatgcagtcaaatagctacttaaaatcgtgaggtaagcaacctttaatgctcaaaccaagtgaaagttcctcatgca |
173 |
Q |
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||||||||||||| |||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||| || | |
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| T |
99662 |
gtagccattgtttgctcagagagaatgcagtcaaatagctacttaaaatcctgaggtaagcaacctttaatgctcaacctaagtgaaagtagctgcaact |
99563 |
T |
|
| Q |
174 |
taagatgtagttattccaattaaggcttgtgcacatgtatgttaactccaatagcagtctcctcattctcagtccctaaatgaataaagcagtacaccag |
273 |
Q |
| |
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||||||||||||||| ||||||| | ||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
99562 |
taagatgtagttattacaattaaagtttgtg----------ttaactccaatggcagtctcctcattctcagcccctaaatgaataaagc---acaccaa |
99476 |
T |
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| Q |
274 |
aaattggacatccttgtaagtaacaaacctgctgccttaca |
314 |
Q |
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||||||||||||||||||||||| ||||||||||||||||| |
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| T |
99475 |
aaattggacatccttgtaagtaataaacctgctgccttaca |
99435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 99796 - 99729
Alignment:
| Q |
1 |
caataattacttttcaatttcaatcaattcaaacaaagtaagaaacacaaaaattatcacgttaattt |
68 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| |||||||| ||||||| ||| |||||||| |
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|
| T |
99796 |
caataatcacttttcaatttcaatcaattcaaacaaagaaagaaacaaaaaaattctcaagttaattt |
99729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 122
Target Start/End: Original strand, 24469255 - 24469303
Alignment:
| Q |
74 |
gtagccattgttttctcaaagaaaatgcagtcaaatagctacttaaaat |
122 |
Q |
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||||||||||||| |||| ||| |||| |||||||||||||||||||| |
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| T |
24469255 |
gtagccattgtttgctcagagagaatgtggtcaaatagctacttaaaat |
24469303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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