View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2761_high_18 (Length: 368)
Name: NF2761_high_18
Description: NF2761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2761_high_18 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 18 - 368
Target Start/End: Original strand, 1680740 - 1681090
Alignment:
| Q |
18 |
cctgaagcaaggcattggctttgacatgtggatctttaactttggggctttcaaaagaaaaccttaggtgatttattaacctgcgaaccacctcttcttc |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
1680740 |
cctgaagcaaggcattggctttgacatgtggatctttaactttggggctttcaaaagaaaacctttggtgatttattaacctgcgaaccacctcttcttc |
1680839 |
T |
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| Q |
118 |
cccaggccgtattggaaggtaagcatattctgatgctgatgacagaatttccaaaagccccttcatttttgtgtttgaagtaatagatgatgaaaacctt |
217 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
1680840 |
cccaggctgtattggaaggtaagcatattctgatgctgatgacagaattttcaaaagccccttcatttttgtgtttgaagtaatatatgatgaaaacctt |
1680939 |
T |
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| Q |
218 |
tcaattgttgtgtaacttatgttatagtaggatgatatcattccaagattaagaggagacaaatgtatatcatcctctatagaaacacacttgcttgctt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1680940 |
tcaattgttgtgtaacttatgttatagtaggatgatatcattccaagattaagaggagacaaatgtatatcatcctctatagaaacacacttgcttgctt |
1681039 |
T |
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| Q |
318 |
ccaaatcactcaatgtattttccaccaactcagagaggtaaccagaaagat |
368 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
1681040 |
ccaaatcactcaatgtattttccaccaactcagagaggtaatcagaaagat |
1681090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 18 - 368
Target Start/End: Complemental strand, 2799988 - 2799638
Alignment:
| Q |
18 |
cctgaagcaaggcattggctttgacatgtggatctttaactttggggctttcaaaagaaaaccttaggtgatttattaacctgcgaaccacctcttcttc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2799988 |
cctgaagcaaggcattggctttgacatgtggatctttaactttggggctttcaaaagaaaaccttaggtgatttattaacctgcgaaccacctcttcttc |
2799889 |
T |
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| Q |
118 |
cccaggccgtattggaaggtaagcatattctgatgctgatgacagaatttccaaaagccccttcatttttgtgtttgaagtaatagatgatgaaaacctt |
217 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||||||||| |
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| T |
2799888 |
cccaggcagtattggaaggtaagcatattctgatgctgatgacagaatttacaaaagccccttcattttagtgtttgaagtaataaatgatgaaaacctt |
2799789 |
T |
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| Q |
218 |
tcaattgttgtgtaacttatgttatagtaggatgatatcattccaagattaagaggagacaaatgtatatcatcctctatagaaacacacttgcttgctt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2799788 |
tcaattgttgtgtaacttatgttatagtaggatgatatcattccaagattaagaggagacaaatgtatatcatcctctatagaaacacacttgcttgctt |
2799689 |
T |
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| Q |
318 |
ccaaatcactcaatgtattttccaccaactcagagaggtaaccagaaagat |
368 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
2799688 |
ccaaatcactcaatgtattttccaccaactcagagaggtaatcagaaagat |
2799638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 18 - 356
Target Start/End: Complemental strand, 29269164 - 29268826
Alignment:
| Q |
18 |
cctgaagcaaggcattggctttgacatgtggatctttaactttggggctttcaaaagaaaaccttaggtgatttattaacctgcgaaccacctcttcttc |
117 |
Q |
| |
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|||| ||||||||||| || || ||||| ||||| | ||||| ||| ||||||| ||||||||| |||| || |||||||| ||||||||||||||||| |
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| T |
29269164 |
cctgcagcaaggcattagccttcacatgaggatccgtgacttttgggttttcaaaggaaaacctttggtggttgattaacctacgaaccacctcttcttc |
29269065 |
T |
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| Q |
118 |
cccaggccgtattggaaggtaagcatattctgatgctgatgacagaatttccaaaagccccttcatttttgtgtttgaagtaatagatgatgaaaacctt |
217 |
Q |
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|||||| ||||||||||||| |||||| |||||||| |||||||||| ||||| | |||||||||||||| |||||||| | ||||||||||||||| |
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| T |
29269064 |
cccaggtcgtattggaaggtgagcatactctgatgcagatgacagaacctccaacaaacccttcatttttgtttttgaagtcaacgatgatgaaaacctt |
29268965 |
T |
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| Q |
218 |
tcaattgttgtgtaacttatgttatagtaggatgatatcattccaagattaagaggagacaaatgtatatcatcctctatagaaacacacttgcttgctt |
317 |
Q |
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|| |||||||||||||| |||| ||| || || | |||||||||||| || |||||||| | | ||||||||||| |||||||||||||||||||||| |
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| T |
29268964 |
tcgattgttgtgtaactgatgtaataatatgaagctatcattccaaggtttagaggagaaaggtccatatcatcctcaatagaaacacacttgcttgctt |
29268865 |
T |
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| Q |
318 |
ccaaatcactcaatgtattttccaccaactcagagaggt |
356 |
Q |
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| || || ||||||||||||||||||| ||| ||||||| |
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| T |
29268864 |
ctaagtcgctcaatgtattttccaccatctctgagaggt |
29268826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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