View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2761_high_20 (Length: 335)

Name: NF2761_high_20
Description: NF2761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2761_high_20
NF2761_high_20
[»] chr3 (47 HSPs)
chr3 (17-223)||(2820514-2820720)
chr3 (17-223)||(2761168-2761374)
chr3 (224-335)||(10208419-10208530)
chr3 (224-335)||(10094487-10094598)
chr3 (224-335)||(10100510-10100621)
chr3 (224-335)||(10201373-10201484)
chr3 (224-335)||(47878570-47878681)
chr3 (224-335)||(29914373-29914484)
chr3 (224-335)||(29963526-29963637)
chr3 (17-223)||(2809221-2809427)
chr3 (224-335)||(16461853-16461964)
chr3 (224-335)||(10896655-10896766)
chr3 (224-335)||(5858197-5858308)
chr3 (224-335)||(10595430-10595541)
chr3 (224-307)||(22627612-22627695)
chr3 (224-305)||(54192897-54192978)
chr3 (225-305)||(54188160-54188240)
chr3 (224-289)||(10901398-10901463)
chr3 (224-307)||(51727460-51727543)
chr3 (222-307)||(43225825-43225910)
chr3 (224-307)||(4308735-4308818)
chr3 (240-335)||(10613198-10613293)
chr3 (224-307)||(35918403-35918486)
chr3 (224-335)||(10949698-10949810)
chr3 (224-307)||(20031798-20031882)
chr3 (224-307)||(9605067-9605150)
chr3 (225-307)||(29956218-29956300)
chr3 (225-307)||(30005373-30005455)
chr3 (224-305)||(27762476-27762557)
chr3 (47-218)||(2771019-2771190)
chr3 (224-291)||(11079169-11079236)
chr3 (224-299)||(25690818-25690893)
chr3 (224-307)||(27101714-27101797)
chr3 (92-218)||(2750954-2751080)
chr3 (224-335)||(47883300-47883412)
chr3 (224-272)||(27543946-27543994)
chr3 (224-307)||(4535262-4535345)
chr3 (276-335)||(6303015-6303074)
chr3 (100-221)||(2853874-2853995)
chr3 (224-272)||(6302984-6303032)
chr3 (139-218)||(2792273-2792352)
chr3 (139-218)||(2799320-2799399)
chr3 (224-269)||(43228032-43228077)
chr3 (279-335)||(27543980-27544036)
chr3 (224-299)||(45882659-45882734)
chr3 (172-224)||(2836736-2836788)
chr3 (227-303)||(38002494-38002570)
[»] chr8 (14 HSPs)
chr8 (224-335)||(4812907-4813018)
chr8 (224-335)||(25684296-25684407)
chr8 (224-335)||(28327561-28327672)
chr8 (224-335)||(28332284-28332395)
chr8 (224-335)||(590466-590577)
chr8 (224-335)||(16757665-16757776)
chr8 (224-335)||(16752941-16753052)
chr8 (224-335)||(9021527-9021638)
chr8 (224-307)||(29555234-29555317)
chr8 (224-335)||(28895153-28895264)
chr8 (227-307)||(3275955-3276035)
chr8 (224-303)||(21033520-21033599)
chr8 (224-307)||(23180008-23180091)
chr8 (223-307)||(22685122-22685206)
[»] chr7 (18 HSPs)
chr7 (224-335)||(7069433-7069544)
chr7 (224-335)||(7074440-7074551)
chr7 (224-335)||(25405046-25405157)
chr7 (230-335)||(3320468-3320573)
chr7 (230-335)||(3325216-3325321)
chr7 (224-335)||(7464918-7465029)
chr7 (224-332)||(8378841-8378949)
chr7 (223-335)||(34547262-34547374)
chr7 (224-335)||(30246642-30246753)
chr7 (223-335)||(44512946-44513058)
chr7 (230-335)||(25409809-25409914)
chr7 (223-335)||(25351004-25351116)
chr7 (223-335)||(25356698-25356810)
chr7 (226-307)||(40946076-40946157)
chr7 (224-305)||(44144357-44144438)
chr7 (223-270)||(2120591-2120638)
chr7 (223-270)||(48457440-48457487)
chr7 (224-272)||(3878322-3878370)
[»] chr6 (25 HSPs)
chr6 (224-335)||(13883128-13883239)
chr6 (224-335)||(31249132-31249243)
chr6 (224-335)||(35201744-35201855)
chr6 (223-335)||(26887643-26887755)
chr6 (224-335)||(30975117-30975228)
chr6 (224-335)||(30981556-30981667)
chr6 (224-335)||(30987720-30987831)
chr6 (224-335)||(35208979-35209090)
chr6 (224-325)||(16785572-16785673)
chr6 (224-335)||(13878380-13878491)
chr6 (237-335)||(25941330-25941428)
chr6 (224-307)||(17695299-17695382)
chr6 (224-335)||(25466320-25466431)
chr6 (224-307)||(1230684-1230767)
chr6 (224-307)||(26064756-26064839)
chr6 (224-307)||(26084725-26084808)
chr6 (224-335)||(28241750-28241860)
chr6 (223-307)||(26642828-26642912)
chr6 (223-307)||(26748794-26748878)
chr6 (228-302)||(22343257-22343331)
chr6 (224-305)||(13467955-13468036)
chr6 (224-270)||(33215499-33215545)
chr6 (224-299)||(15533145-15533220)
chr6 (224-307)||(22352303-22352386)
chr6 (224-272)||(14507668-14507716)
[»] chr4 (20 HSPs)
chr4 (224-335)||(11853202-11853313)
chr4 (224-335)||(31300074-31300185)
chr4 (222-307)||(16488999-16489084)
chr4 (224-335)||(15316630-15316741)
chr4 (224-335)||(40636868-40636979)
chr4 (224-333)||(15311994-15312103)
chr4 (228-335)||(15830817-15830924)
chr4 (224-307)||(18586616-18586699)
chr4 (223-307)||(8528917-8529001)
chr4 (224-307)||(4884531-4884614)
chr4 (223-307)||(8631879-8631963)
chr4 (224-307)||(6764654-6764737)
chr4 (224-298)||(4556511-4556585)
chr4 (224-302)||(47868195-47868273)
chr4 (226-307)||(2485310-2485390)
chr4 (224-303)||(16689394-16689472)
chr4 (224-305)||(25699401-25699482)
chr4 (224-304)||(7050722-7050802)
chr4 (224-276)||(26086240-26086292)
chr4 (224-256)||(4569723-4569755)
[»] chr2 (21 HSPs)
chr2 (224-335)||(2735858-2735969)
chr2 (224-335)||(39686636-39686747)
chr2 (224-335)||(45567062-45567173)
chr2 (224-323)||(2740594-2740693)
chr2 (224-335)||(17462088-17462199)
chr2 (224-335)||(22712915-22713026)
chr2 (224-335)||(39679698-39679809)
chr2 (224-335)||(22717645-22717756)
chr2 (224-332)||(30478666-30478774)
chr2 (224-332)||(12781643-12781751)
chr2 (224-335)||(33674825-33674936)
chr2 (224-335)||(27518040-27518151)
chr2 (224-305)||(17943210-17943291)
chr2 (223-307)||(20055217-20055301)
chr2 (224-335)||(20050443-20050554)
chr2 (224-307)||(35894688-35894771)
chr2 (224-335)||(38190649-38190761)
chr2 (224-305)||(37171202-37171283)
chr2 (226-276)||(5377898-5377948)
chr2 (224-270)||(45280457-45280503)
chr2 (225-270)||(17932328-17932373)
[»] chr1 (10 HSPs)
chr1 (224-335)||(9526117-9526228)
chr1 (224-335)||(9521367-9521478)
chr1 (224-335)||(2232262-2232373)
chr1 (223-335)||(21353746-21353858)
chr1 (224-307)||(2393729-2393812)
chr1 (224-307)||(2401643-2401726)
chr1 (224-307)||(2617280-2617363)
chr1 (224-305)||(25133681-25133762)
chr1 (224-291)||(23689317-23689384)
chr1 (224-272)||(20291280-20291328)
[»] scaffold0209 (1 HSPs)
scaffold0209 (224-335)||(17385-17496)
[»] chr5 (15 HSPs)
chr5 (224-335)||(35385851-35385962)
chr5 (230-335)||(1170470-1170575)
chr5 (224-335)||(25452146-25452257)
chr5 (224-307)||(2298445-2298528)
chr5 (224-307)||(40222414-40222497)
chr5 (224-306)||(42237954-42238036)
chr5 (224-309)||(25445219-25445304)
chr5 (224-307)||(1240078-1240161)
chr5 (224-307)||(6747044-6747127)
chr5 (224-335)||(22672504-22672615)
chr5 (223-307)||(10529555-10529639)
chr5 (223-307)||(6744800-6744884)
chr5 (224-307)||(4409797-4409880)
chr5 (226-307)||(39854226-39854307)
chr5 (229-279)||(17841766-17841816)
[»] scaffold0006 (1 HSPs)
scaffold0006 (241-335)||(224510-224604)
[»] scaffold1764 (1 HSPs)
scaffold1764 (224-335)||(1108-1219)
[»] scaffold0256 (1 HSPs)
scaffold0256 (224-335)||(15976-16087)
[»] scaffold0131 (1 HSPs)
scaffold0131 (226-335)||(30795-30904)
[»] scaffold0004 (1 HSPs)
scaffold0004 (223-306)||(188671-188754)
[»] scaffold0552 (1 HSPs)
scaffold0552 (224-307)||(1266-1349)
[»] scaffold0038 (1 HSPs)
scaffold0038 (224-335)||(41912-42022)
[»] scaffold0016 (1 HSPs)
scaffold0016 (224-264)||(120569-120609)
[»] scaffold0691 (1 HSPs)
scaffold0691 (139-223)||(4252-4336)


Alignment Details
Target: chr3 (Bit Score: 183; Significance: 6e-99; HSPs: 47)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 17 - 223
Target Start/End: Complemental strand, 2820720 - 2820514
Alignment:
Q  17 agttaatagctttgagattattcaagaacatgatgccggagggtacccccatcagttcggggattctgttcatggtaagatattcaagagagatcaaagt 116  Q
    |||||||||||||||||||||||||| || |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2820720 agttaatagctttgagattattcaaggacttgatgccgtagggtacctccatcagttcggggattctgttcatggtaagatattcaagagagatcaaagt 2820621  T
Q  117 tccttcgtctatacggatatactttactctattcaagcgactgaggttcagtctcttcaattttagaaaccctccaatttgaaaatgcaaaatttcacca 216  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  2820620 tccttcgtctatacagatatactttactctattcaagcgactgaggttcagtctcttcaattttagaaaccctccaattcgaaaatgcaaaatttcacca 2820521  T
Q  217 tcgtagg 223  Q
    |||||||    
T  2820520 tcgtagg 2820514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 17 - 223
Target Start/End: Complemental strand, 2761374 - 2761168
Alignment:
Q  17 agttaatagctttgagattattcaagaacatgatgccggagggtacccccatcagttcggggattctgttcatggtaagatattcaagagagatcaaagt 116  Q
    |||||||| ||||||| |||| |||| || ||||||| ||||| ||| || | || | ||||||||||| |||| | |||||||||||||||||||||||    
T  2761374 agttaatatctttgagtttatccaaggacctgatgcctgagggcacctcctttagctgggggattctgtccatgttcagatattcaagagagatcaaagt 2761275  T
Q  117 tccttcgtctatacggatatactttactctattcaagcgactgaggttcagtctcttcaattttagaaaccctccaatttgaaaatgcaaaatttcacca 216  Q
    ||||||||||||| ||||| | ||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  2761274 tccttcgtctataaggatagaatttaccctattcaagcgcctgaggttcagtctcttcaactttagaaaccctccaatttgaaaatgcaaaatttcacca 2761175  T
Q  217 tcgtagg 223  Q
    || ||||    
T  2761174 tcatagg 2761168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 224 - 335
Target Start/End: Complemental strand, 10208530 - 10208419
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacactgga 323  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  10208530 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagatttctgggaagacactgga 10208431  T
Q  324 aatttcgtgcca 335  Q
    ||||||||||||    
T  10208430 aatttcgtgcca 10208419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 224 - 335
Target Start/End: Complemental strand, 10094598 - 10094487
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacactgga 323  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  10094598 tgtgagagttaacttaaaatcagaaatctggagtatcgttccacgatggagaagcatcgcgtcacgatggttgaagcaagattcctgggaagacactgga 10094499  T
Q  324 aatttcgtgcca 335  Q
    ||||||||||||    
T  10094498 aatttcgtgcca 10094487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 224 - 335
Target Start/End: Complemental strand, 10100621 - 10100510
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacactgga 323  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  10100621 tgtgagagttaacttaaaatcagaaatctagagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagatttctgggaagacactgga 10100522  T
Q  324 aatttcgtgcca 335  Q
    ||||||||||||    
T  10100521 aatttcgtgcca 10100510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 224 - 335
Target Start/End: Complemental strand, 10201484 - 10201373
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacactgga 323  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10201484 tgtgagatttaacttaaaatcagaaatctggagtatcgttccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacactgga 10201385  T
Q  324 aatttcgtgcca 335  Q
    ||||||||||||    
T  10201384 aatttcgtgcca 10201373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 224 - 335
Target Start/End: Complemental strand, 47878681 - 47878570
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacactgga 323  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  ||||||    
T  47878681 tgtgagagttaacttaaaatcagaaatctggagaatcgtgccacgatggagaagcatcgcgccacgattgttgaagcaagattcctgggaagctactgga 47878582  T
Q  324 aatttcgtgcca 335  Q
    ||||||||||||    
T  47878581 aatttcgtgcca 47878570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 224 - 335
Target Start/End: Complemental strand, 29914484 - 29914373
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacactgga 323  Q
    |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  ||||||    
T  29914484 tgtgggagttaacttaaaatcagaaatctggagaatcgtgccacgatggagaagcatcgcgccacgattgttgaagcaagattcctgggaagctactgga 29914385  T
Q  324 aatttcgtgcca 335  Q
    ||||||||||||    
T  29914384 aatttcgtgcca 29914373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 224 - 335
Target Start/End: Complemental strand, 29963637 - 29963526
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacactgga 323  Q
    |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  ||||||    
T  29963637 tgtgggagttaacttaaaatcagaaatctggagaatcgtgccacgatggagaagcatcgcgccacgattgttgaagcaagattcctgggaagctactgga 29963538  T
Q  324 aatttcgtgcca 335  Q
    ||||||||||||    
T  29963537 aatttcgtgcca 29963526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 17 - 223
Target Start/End: Complemental strand, 2809427 - 2809221
Alignment:
Q  17 agttaatagctttgagattattcaagaacatgatgccggagggtacccccatcagttcggggattctgttcatggtaagatattcaagagagatcaaagt 116  Q
    |||||||||||||||| |||| |||| |  ||||||| ||||||||| || |||| | ||| ||||||| ||||||||||||||||||||||||||||||    
T  2809427 agttaatagctttgagtttatccaaggatctgatgcctgagggtacctccttcagctggggtattctgtccatggtaagatattcaagagagatcaaagt 2809328  T
Q  117 tccttcgtctatacggatatactttactctattcaagcgactgaggttcagtctcttcaattttagaaaccctccaatttgaaaatgcaaaatttcacca 216  Q
    ||||||||||||| ||| |   | ||||||||||||||||||||| |  ||| || ||||||||| |||||| ||| | |||||||| ||||||||||||    
T  2809327 tccttcgtctataaggacagtatgtactctattcaagcgactgagatctagtttcctcaattttaaaaacccgccattctgaaaatgtaaaatttcacca 2809228  T
Q  217 tcgtagg 223  Q
    || ||||    
T  2809227 tcatagg 2809221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 224 - 335
Target Start/End: Original strand, 16461853 - 16461964
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacactgga 323  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||   ||||||    
T  16461853 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgattgttgaagcaagattcctgggaaactactgga 16461952  T
Q  324 aatttcgtgcca 335  Q
    ||  ||||||||    
T  16461953 aaaatcgtgcca 16461964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 224 - 335
Target Start/End: Original strand, 10896655 - 10896766
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacactgga 323  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||| | ||||| |||||  ||||||    
T  10896655 tgtgagagttaacttaaaatcagaaatatggagtatcgtgccacgatggagaagcatcgcgccacgattgctgaagcatggttcctaggaagctactgga 10896754  T
Q  324 aatttcgtgcca 335  Q
    ||||||||||||    
T  10896755 aatttcgtgcca 10896766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 224 - 335
Target Start/End: Original strand, 5858197 - 5858308
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacactgga 323  Q
    ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||   || ||  ||||||    
T  5858197 tgtgagagttaacttaaaatcaggaatctggagaatcgtgccacgatggagaagcatcgcgccacgattgttgaagcaagattctgagggagctactgga 5858296  T
Q  324 aatttcgtgcca 335  Q
    ||||||||||||    
T  5858297 aatttcgtgcca 5858308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 224 - 335
Target Start/End: Complemental strand, 10595541 - 10595430
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacactgga 323  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||| |||||||||||||||   |||||  ||||||    
T  10595541 tgtgagagttaacttaaaatcagaaatctggagaatcgtgccacgatggagaaacattgcgccacgattgttgaagcaagattctgaggaagctactgga 10595442  T
Q  324 aatttcgtgcca 335  Q
    ||||||||||||    
T  10595441 aatttcgtgcca 10595430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 224 - 307
Target Start/End: Complemental strand, 22627695 - 22627612
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattc 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  22627695 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatctcgccacgattgttgaagcaagattc 22627612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 224 - 305
Target Start/End: Original strand, 54192897 - 54192978
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagat 305  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||    
T  54192897 tgtgagagttaacttaaaatcagaaatctggagaatcgtgccacgatggagaagcatcgcgccacgattgttgaagcaagat 54192978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 225 - 305
Target Start/End: Original strand, 54188160 - 54188240
Alignment:
Q  225 gtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagat 305  Q
    ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |||||||||||||    
T  54188160 gtgagagttaacttaaaatcagaaatctgaagaatcgtgccacgatggagaagcatcgcgccacgattgttgaagcaagat 54188240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 224 - 289
Target Start/End: Original strand, 10901398 - 10901463
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacg 289  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10901398 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacg 10901463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 224 - 307
Target Start/End: Complemental strand, 51727543 - 51727460
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattc 307  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||| |||||||| |||||||||| ||||    
T  51727543 tgtgagagttaacttaaaatcagaattctggagaatcgtgccacgatggagaagcttcgtgccacgattgttgaagcaaaattc 51727460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 222 - 307
Target Start/End: Original strand, 43225825 - 43225910
Alignment:
Q  222 ggtgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattc 307  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||| || ||||| |||||||||| ||||    
T  43225825 ggtgtgagagttaacttaaaatcagaattctggagaatcgtgccacgatggagaagcttcgtgctacgattgttgaagcaaaattc 43225910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 224 - 307
Target Start/End: Complemental strand, 4308818 - 4308735
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattc 307  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||||| |||||| ||| |||||||| |||||||||| ||||    
T  4308818 tgtgagagttaacttaaaatcagaattctggagaatcgtgccacgatgaagaagcttcgtgccacgattgttgaagcaaaattc 4308735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 240 - 335
Target Start/End: Complemental strand, 10613293 - 10613198
Alignment:
Q  240 aaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacactggaaatttcgtgcca 335  Q
    ||||||||||||||||| ||||||||||||||||||| |||||| ||||||| |||||||||||||||   |||||  |||||||||||| |||||    
T  10613293 aaatcagaaatctggagaatcgtgccacgatggagaaacatcgcaccacgattgttgaagcaagattctgaggaagctactggaaatttcatgcca 10613198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 224 - 307
Target Start/End: Complemental strand, 35918486 - 35918403
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattc 307  Q
    ||||||||||||||||||||||||| | ||||| ||||||||||||||||||||| ||| |||||||| |||||||||| ||||    
T  35918486 tgtgagagttaacttaaaatcagaattatggagaatcgtgccacgatggagaagcttcgtgccacgattgttgaagcaaaattc 35918403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 224 - 335
Target Start/End: Complemental strand, 10949810 - 10949698
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctg--ggaagacactg 321  Q
    ||||||||||||||||||||||| ||||||||| | |||||||||||||||||||| || |||||||| |||||| ||||| |||||  | ||| |||||    
T  10949810 tgtgagagttaacttaaaatcaggaatctggagaaacgtgccacgatggagaagcaacgtgccacgattgttgaaacaaga-tcctgaagcaagtcactg 10949712  T
Q  322 gaaatttcgtgcca 335  Q
    |||| |||||||||    
T  10949711 gaaaattcgtgcca 10949698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 224 - 307
Target Start/End: Complemental strand, 20031882 - 20031798
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggag-aagcatcgcgccacgatggttgaagcaagattc 307  Q
    ||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||  | |||||||| |||||||||||||||    
T  20031882 tgtgagagttaacttaaaatcagaaatctggagaaacgtgccacgatggagaaagcaatgtgccacgattgttgaagcaagattc 20031798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 224 - 307
Target Start/End: Complemental strand, 9605150 - 9605067
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattc 307  Q
    ||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||  ||| |||||||| |||||||||| ||||    
T  9605150 tgtgagagttaacttaaaatcagaattctggagaatcgtgctacgatggagaagtttcgtgccacgattgttgaagcaaaattc 9605067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 225 - 307
Target Start/End: Original strand, 29956218 - 29956300
Alignment:
Q  225 gtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattc 307  Q
    |||||||||||||||||||||||| ||||||  |||||| |||||||||||||| ||| |||||||| |||||||||| ||||    
T  29956218 gtgagagttaacttaaaatcagaattctggataatcgtgtcacgatggagaagcttcgtgccacgattgttgaagcaaaattc 29956300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 225 - 307
Target Start/End: Original strand, 30005373 - 30005455
Alignment:
Q  225 gtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattc 307  Q
    |||||||||||||||||||||||| ||||||  |||||| |||||||||||||| ||| |||||||| |||||||||| ||||    
T  30005373 gtgagagttaacttaaaatcagaattctggataatcgtgtcacgatggagaagcttcgtgccacgattgttgaagcaaaattc 30005455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 224 - 305
Target Start/End: Complemental strand, 27762557 - 27762476
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagat 305  Q
    ||||||||||||||||||||||| |||||| || | |||||||||||||||||||| || |||||||| |||||| ||||||    
T  27762557 tgtgagagttaacttaaaatcaggaatctgaagaaacgtgccacgatggagaagcaacgtgccacgattgttgaaacaagat 27762476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 47 - 218
Target Start/End: Complemental strand, 2771190 - 2771019
Alignment:
Q  47 tgatgccggagggtacccccatcagttcggggattctgttcatggtaagatattcaagagagatcaaagttccttcgtctatacggatatactttactct 146  Q
    |||||||  |||||||| || |||||| ||||||| | | ||  ||||||| ||||||||||| |||| |||| | ||| |||   ||  | || ||| |    
T  2771190 tgatgccaaagggtacctccttcagttgggggattttttccagtgtaagatgttcaagagagagcaaatttccatggtcaataacaatggagttaacttt 2771091  T
Q  147 attcaagcgactgaggttcagtctcttcaattttagaaaccctccaatttgaaaatgcaaaatttcaccatc 218  Q
    |||||||| || ||| |||||| || |||||||||||||||||||| |||||||||| ||||||||||||||    
T  2771090 attcaagcaacggagattcagtgtcatcaattttagaaaccctccattttgaaaatgaaaaatttcaccatc 2771019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 224 - 291
Target Start/End: Original strand, 11079169 - 11079236
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgat 291  Q
    ||||||||||||||||||||||| ||||||||| | |||||||||||||||||||| || ||||||||    
T  11079169 tgtgagagttaacttaaaatcagtaatctggagaaacgtgccacgatggagaagcaacgtgccacgat 11079236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 224 - 299
Target Start/End: Complemental strand, 25690893 - 25690818
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaag 299  Q
    ||||||||||||||||||||||||| ||||  | ||||||||||||||||||||| ||| |||||||| |||||||    
T  25690893 tgtgagagttaacttaaaatcagaattctgatgaatcgtgccacgatggagaagcttcgtgccacgattgttgaag 25690818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 224 - 307
Target Start/End: Complemental strand, 27101797 - 27101714
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattc 307  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||  | | |||| ||| |||||||||| ||||    
T  27101797 tgtgagagttaacttaaaatcagaattctggagaatcgtgccacgatggagaagttttgtgccatgattgttgaagcaaaattc 27101714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 92 - 218
Target Start/End: Complemental strand, 2751080 - 2750954
Alignment:
Q  92 taagatattcaagagagatcaaagttccttcgtctatacggatatactttactctattcaagcgactgaggttcagtctcttcaattttagaaaccctcc 191  Q
    |||||| ||||||||||| ||||| |||||  |||||| ||||| | |||  |||||||||| |||||||  |||||   |||||| || |||| |||||    
T  2751080 taagattttcaagagagagcaaagctcctttctctataaggatagaatttggtctattcaagtgactgagaatcagttctttcaatatttgaaatcctcc 2750981  T
Q  192 aatttgaaaatgcaaaatttcaccatc 218  Q
    | |||||||||||||||||||||||||    
T  2750980 attttgaaaatgcaaaatttcaccatc 2750954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 224 - 335
Target Start/End: Complemental strand, 47883412 - 47883300
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctg--ggaagacactg 321  Q
    ||||||||||||||||||||||| ||| ||||| | |||||||||||||||||||| || | |||||| |||||| ||||| |||||  | ||| |||||    
T  47883412 tgtgagagttaacttaaaatcaggaatttggagaaacgtgccacgatggagaagcaacgtgtcacgattgttgaaacaaga-tcctgatgcaagtcactg 47883314  T
Q  322 gaaatttcgtgcca 335  Q
    |||| |||||||||    
T  47883313 gaaaattcgtgcca 47883300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 224 - 272
Target Start/End: Original strand, 27543946 - 27543994
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatgg 272  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  27543946 tgtgagagttaacttaaaatcagaaatttggagtatcgtgccacgatgg 27543994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 224 - 307
Target Start/End: Original strand, 4535262 - 4535345
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattc 307  Q
    ||||||||||||||||||||||  ||||||||| ||| |  ||||||||||||||| || |||||||| |||||| ||||||||    
T  4535262 tgtgagagttaacttaaaatcatgaatctggagaatcatatcacgatggagaagcaacgtgccacgattgttgaaacaagattc 4535345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 276 - 335
Target Start/End: Original strand, 6303015 - 6303074
Alignment:
Q  276 agcatcgcgccacgatggttgaagcaagattcctgggaagacactggaaatttcgtgcca 335  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||||||  ||||||||    
T  6303015 agcatcgcgccacgatggttgaagcaagattcctgggaagctactggaaaaatcgtgcca 6303074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 100 - 221
Target Start/End: Original strand, 2853874 - 2853995
Alignment:
Q  100 tcaagagagatcaaagttccttcgtctatacggatatactttactctattcaagcgactgaggttcagtctcttcaattttagaaaccctccaatttgaa 199  Q
    |||||||| ||||||| |||||  |||||| | ||| | |||  ||||||||||  ||||||  |||||   ||||||||| |||| |||||| ||||||    
T  2853874 tcaagagaaatcaaagctcctttctctataagaatagaatttggtctattcaagtaactgagaatcagttctttcaatttttgaaatcctccattttgaa 2853973  T
Q  200 aatgcaaaatttcaccatcgta 221  Q
    ||||||||||||||||||||||    
T  2853974 aatgcaaaatttcaccatcgta 2853995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 224 - 272
Target Start/End: Original strand, 6302984 - 6303032
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatgg 272  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||||    
T  6302984 tgtgagagttaacttaaaatcagaaatctggagcatcgcgccacgatgg 6303032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 139 - 218
Target Start/End: Complemental strand, 2792352 - 2792273
Alignment:
Q  139 tttactctattcaagcgactgaggttcagtctcttcaattttagaaaccctccaatttgaaaatgcaaaatttcaccatc 218  Q
    |||||| ||| ||||| || |||||||||| || ||| ||| |||||||||||| |||||||||| ||||||||||||||    
T  2792352 tttactttatacaagcaacggaggttcagtgtcatcagtttaagaaaccctccattttgaaaatgaaaaatttcaccatc 2792273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 139 - 218
Target Start/End: Complemental strand, 2799399 - 2799320
Alignment:
Q  139 tttactctattcaagcgactgaggttcagtctcttcaattttagaaaccctccaatttgaaaatgcaaaatttcaccatc 218  Q
    |||| |||||||||| | |  ||||||||| | ||||||||||||||||||||| || ||||||| ||||||||||||||    
T  2799399 tttattctattcaagtgtcgaaggttcagtgtgttcaattttagaaaccctccatttcgaaaatgaaaaatttcaccatc 2799320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 224 - 269
Target Start/End: Original strand, 43228032 - 43228077
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacga 269  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||    
T  43228032 tgtgagagttaacttaaaatcagaattctggagaatcgtgccacga 43228077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 279 - 335
Target Start/End: Original strand, 27543980 - 27544036
Alignment:
Q  279 atcgcgccacgatggttgaagcaagattcctgggaagacactggaaatttcgtgcca 335  Q
    |||| ||||||||||||||||||||||||||||||||  ||||||||  ||||||||    
T  27543980 atcgtgccacgatggttgaagcaagattcctgggaagctactggaaaaatcgtgcca 27544036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 299
Target Start/End: Original strand, 45882659 - 45882734
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagta-tcgtgccacgatggagaagcatcgcgccacgatggttgaag 299  Q
    ||||||||||||||||||||||| | |||| |  | |||||||||||||||||| || || ||||||||||||||||    
T  45882659 tgtgagagttaacttaaaatcagga-tctgcaaaaatcgtgccacgatggagaaacaacgtgccacgatggttgaag 45882734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 2836736 - 2836788
Alignment:
Q  172 ttcaattttagaaaccctccaatttgaaaatgcaaaatttcaccatcgtaggt 224  Q
    ||||||||| |||||||| || ||| |||||| ||||||||||| ||||||||    
T  2836736 ttcaatttttgaaacccttcattttcaaaatggaaaatttcaccctcgtaggt 2836788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 303
Target Start/End: Original strand, 38002494 - 38002570
Alignment:
Q  227 gagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaag 303  Q
    |||||||||||||||||||| ||||||||| | |||| || |||||| ||||| |  | || ||| |||||||||||    
T  38002494 gagagttaacttaaaatcagtaatctggagaaacgtgtcatgatggataagcaacatgtcatgattgttgaagcaag 38002570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 112; Significance: 1e-56; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 224 - 335
Target Start/End: Complemental strand, 4813018 - 4812907
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacactgga 323  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4813018 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacactgga 4812919  T
Q  324 aatttcgtgcca 335  Q
    ||||||||||||    
T  4812918 aatttcgtgcca 4812907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 224 - 335
Target Start/End: Original strand, 25684296 - 25684407
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacactgga 323  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25684296 tgtgagagttaacttaaaatcagaaatctggagcatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacactgga 25684395  T
Q  324 aatttcgtgcca 335  Q
    ||||||||||||    
T  25684396 aatttcgtgcca 25684407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 224 - 335
Target Start/End: Original strand, 28327561 - 28327672
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacactgga 323  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  28327561 tgtgagagttaacttaaaatcagaaatctggagcatcgtgccacgatggagaagcatcgcgccacgatggctgaagcaagattcctgggaagacactgga 28327660  T
Q  324 aatttcgtgcca 335  Q
      ||||||||||    
T  28327661 tttttcgtgcca 28327672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 224 - 335
Target Start/End: Original strand, 28332284 - 28332395
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacactgga 323  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  28332284 tgtgagagttaacttaaaatcagaaatctggagcatcgtgccacgatggagaagcatcgcgccacgatggctgaagcaagattcctgggaagacactgga 28332383  T
Q  324 aatttcgtgcca 335  Q
      ||||||||||    
T  28332384 tttttcgtgcca 28332395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 224 - 335
Target Start/End: Original strand, 590466 - 590577
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacactgga 323  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||||||||||  ||||||    
T  590466 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgataaagaagcatcgcgccacgattgttgaagcaagattcctgggaagctactgga 590565  T
Q  324 aatttcgtgcca 335  Q
    ||||||||||||    
T  590566 aatttcgtgcca 590577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 224 - 335
Target Start/End: Complemental strand, 16757776 - 16757665
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacactgga 323  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  ||||||    
T  16757776 tgtgagagttaacttaaaatcagaaatctggagcatcgtgccacgatggagaggcatcgcgccacgatggttgaagcaagattcctgggaagctactgga 16757677  T
Q  324 aatttcgtgcca 335  Q
    ||  ||||||||    
T  16757676 aaaatcgtgcca 16757665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 224 - 335
Target Start/End: Complemental strand, 16753052 - 16752941
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacactgga 323  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||  ||||||    
T  16753052 tgtgagacttaacttaaaatcagaaatctggagcatcgtgccacgatagagaggcatcgcgccacgatggttgaagcaagattcctgggaagctactgga 16752953  T
Q  324 aatttcgtgcca 335  Q
    ||  ||||||||    
T  16752952 aaaatcgtgcca 16752941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 224 - 335
Target Start/End: Complemental strand, 9021638 - 9021527
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacactgga 323  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||| |||||||||||||||   |||||  ||||||    
T  9021638 tgtgagagttaacttaaaatcagaattctggagaatcgtgccacgatggagaagcatcgcgtcacgattgttgaagcaagattctgaggaagctactgga 9021539  T
Q  324 aatttcgtgcca 335  Q
    | ||||||||||    
T  9021538 attttcgtgcca 9021527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 224 - 307
Target Start/End: Complemental strand, 29555317 - 29555234
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattc 307  Q
    ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  29555317 tgtgagagttaacttaaaatcagaaatctggagaatcgtgctacgatggagaagcatcgcgccacgattgttgaagcaagattc 29555234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 224 - 335
Target Start/End: Original strand, 28895153 - 28895264
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacactgga 323  Q
    ||||||| |||||||||||| | || | ||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||  ||||||    
T  28895153 tgtgagacttaacttaaaataaaaattttggagaatcgtgccacgatgtagaagcatcgcgccacgattgttgaagcaagattcctgggaagctactgga 28895252  T
Q  324 aatttcgtgcca 335  Q
    ||  ||||||||    
T  28895253 aaaatcgtgcca 28895264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 227 - 307
Target Start/End: Original strand, 3275955 - 3276035
Alignment:
Q  227 gagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattc 307  Q
    |||||||||||||||||||||||||||||| | ||||||||||||||||||||  | |||||||| |||||||||||||||    
T  3275955 gagagttaacttaaaatcagaaatctggagaaacgtgccacgatggagaagcaatgtgccacgattgttgaagcaagattc 3276035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 224 - 303
Target Start/End: Original strand, 21033520 - 21033599
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaag 303  Q
    |||||||||||||||||||||  ||| |||||| |||||||||||||||||||||| || |||||||| |||||||||||    
T  21033520 tgtgagagttaacttaaaatctaaaaactggagaatcgtgccacgatggagaagcaacgtgccacgattgttgaagcaag 21033599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 224 - 307
Target Start/End: Complemental strand, 23180091 - 23180008
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattc 307  Q
    ||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||| || | ||| |||||| ||||||||    
T  23180091 tgtgagagttaacttaaaatcaggaatctggagaatcgtgctacgatggagaagcatcgtgctatgattgttgaaacaagattc 23180008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 223 - 307
Target Start/End: Complemental strand, 22685206 - 22685122
Alignment:
Q  223 gtgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattc 307  Q
    ||||| || ||||||||||||||||| |||| || |||||||||||||| |||||| ||| |||||||| |||||| ||| ||||    
T  22685206 gtgtgggacttaacttaaaatcagaattctgaagaatcgtgccacgatgaagaagcttcgtgccacgattgttgaaccaaaattc 22685122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 112; Significance: 1e-56; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 224 - 335
Target Start/End: Original strand, 7069433 - 7069544
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacactgga 323  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7069433 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacactgga 7069532  T
Q  324 aatttcgtgcca 335  Q
    ||||||||||||    
T  7069533 aatttcgtgcca 7069544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 224 - 335
Target Start/End: Original strand, 7074440 - 7074551
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacactgga 323  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  7074440 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgtgccacgatggttgaagcaagattcctgggaagacactgga 7074539  T
Q  324 aatttcgtgcca 335  Q
    ||||||||||||    
T  7074540 aatttcgtgcca 7074551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 224 - 335
Target Start/End: Original strand, 25405046 - 25405157
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacactgga 323  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25405046 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacactgga 25405145  T
Q  324 aatttcgtgcca 335  Q
      ||||||||||    
T  25405146 tttttcgtgcca 25405157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 230 - 335
Target Start/End: Complemental strand, 3320573 - 3320468
Alignment:
Q  230 agttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacactggaaatttc 329  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  3320573 agttaacttaaaatcagaaatctggagcatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagccactggaaatttc 3320474  T
Q  330 gtgcca 335  Q
    ||||||    
T  3320473 gtgcca 3320468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 230 - 335
Target Start/End: Complemental strand, 3325321 - 3325216
Alignment:
Q  230 agttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacactggaaatttc 329  Q
    |||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||    
T  3325321 agttaacttaaaatcagaaatctgaagcatcgtgccacgatggagaagcatcgcaccacgatggttgaagcaagattcctgggaagccactggaaatttc 3325222  T
Q  330 gtgcca 335  Q
    ||||||    
T  3325221 gtgcca 3325216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 224 - 335
Target Start/End: Complemental strand, 7465029 - 7464918
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacactgga 323  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||   |||||  ||||||    
T  7465029 tgtgagagttaacttaaaatcagaattctggagaatcgtgccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctactgga 7464930  T
Q  324 aatttcgtgcca 335  Q
    ||||||||||||    
T  7464929 aatttcgtgcca 7464918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 224 - 332
Target Start/End: Complemental strand, 8378949 - 8378841
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacactgga 323  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||   |||||  ||||||    
T  8378949 tgtgagagttaacttaaaatcagaaatttggagaatcgtgccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctactgga 8378850  T
Q  324 aatttcgtg 332  Q
    |||||||||    
T  8378849 aatttcgtg 8378841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 223 - 335
Target Start/End: Complemental strand, 34547374 - 34547262
Alignment:
Q  223 gtgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacactgg 322  Q
    |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||   |||||  |||||    
T  34547374 gtgtgagagttaacttaaaatcagaaatctggagaatcgtgtcacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctactgg 34547275  T
Q  323 aaatttcgtgcca 335  Q
    || ||||||||||    
T  34547274 aattttcgtgcca 34547262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 224 - 335
Target Start/End: Original strand, 30246642 - 30246753
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacactgga 323  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||   |||||  | ||||    
T  30246642 tgtgagagttaacttaaaatcagaaatctggagaatcgtgccacgatggagaagcattgcgccacgattgttgaagcaagattctgaggaagctattgga 30246741  T
Q  324 aatttcgtgcca 335  Q
    ||||||||||||    
T  30246742 aatttcgtgcca 30246753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 223 - 335
Target Start/End: Complemental strand, 44513058 - 44512946
Alignment:
Q  223 gtgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacactgg 322  Q
    ||||||||||||||||||||||| || ||||||| || ||||||||||||||||||||||||||||||| |||||||||||||||   |||||  |||||    
T  44513058 gtgtgagagttaacttaaaatcaaaattctggagaattgtgccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctactgg 44512959  T
Q  323 aaatttcgtgcca 335  Q
    || ||||||||||    
T  44512958 aattttcgtgcca 44512946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 230 - 335
Target Start/End: Original strand, 25409809 - 25409914
Alignment:
Q  230 agttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctg-ggaagacactggaaattt 328  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| || |||| ||||| |||||  ||||||| |||    
T  25409809 agttaacttaaaatcagaaatctggagaatcgtgccacgatggagaagcatcgcgccacgattgttggaggaaga-tcctgaggaagctactggaatttt 25409907  T
Q  329 cgtgcca 335  Q
    |||||||    
T  25409908 cgtgcca 25409914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 223 - 335
Target Start/End: Original strand, 25351004 - 25351116
Alignment:
Q  223 gtgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctg-ggaagacactg 321  Q
    ||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||| |||| ||||||| ||||| |||||  ||||    
T  25351004 gtgtgggagttaacttaaaatcagaaatttggagaatcgtgccacgatggagaagcatcgtgccacgattgttggagcaaga-tcctgaggaagctactg 25351102  T
Q  322 gaaatttcgtgcca 335  Q
    ||| ||||||||||    
T  25351103 gaattttcgtgcca 25351116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 223 - 335
Target Start/End: Original strand, 25356698 - 25356810
Alignment:
Q  223 gtgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctg-ggaagacactg 321  Q
    ||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||| |||| ||||||| ||||| |||||  ||||    
T  25356698 gtgtgggagttaacttaaaatcagaaatttggagaatcgtgccacgatggagaagcatcgtgccacgattgttggagcaaga-tcctgaggaagctactg 25356796  T
Q  322 gaaatttcgtgcca 335  Q
    ||| ||||||||||    
T  25356797 gaattttcgtgcca 25356810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 226 - 307
Target Start/End: Original strand, 40946076 - 40946157
Alignment:
Q  226 tgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattc 307  Q
    ||||||||||||||||||||||| |||| || |||||||||||||| |||||| ||| |||||||| |||||||||| ||||    
T  40946076 tgagagttaacttaaaatcagaattctgaagaatcgtgccacgatgaagaagcttcgtgccacgattgttgaagcaaaattc 40946157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 224 - 305
Target Start/End: Complemental strand, 44144438 - 44144357
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagat 305  Q
    ||||||||||||||||||||||| ||||| ||| | ||||||||||||||||| || || |||||||| |||||| ||||||    
T  44144438 tgtgagagttaacttaaaatcaggaatctagagaaacgtgccacgatggagaaacaacgtgccacgattgttgaaacaagat 44144357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 223 - 270
Target Start/End: Original strand, 2120591 - 2120638
Alignment:
Q  223 gtgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgat 270  Q
    |||||||||||||||||||||||||| |||||||||||| ||||||||    
T  2120591 gtgtgagagttaacttaaaatcagaattctggagtatcgcgccacgat 2120638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 223 - 270
Target Start/End: Original strand, 48457440 - 48457487
Alignment:
Q  223 gtgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgat 270  Q
    |||||||||||||||||||||||||| ||||||| |||||||||||||    
T  48457440 gtgtgagagttaacttaaaatcagaattctggagaatcgtgccacgat 48457487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 272
Target Start/End: Original strand, 3878322 - 3878370
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatgg 272  Q
    ||||||||||||||||||||||||  |||| || |||||| ||||||||    
T  3878322 tgtgagagttaacttaaaatcagatttctgcagaatcgtggcacgatgg 3878370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 112; Significance: 1e-56; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 224 - 335
Target Start/End: Original strand, 13883128 - 13883239
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacactgga 323  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13883128 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacactgga 13883227  T
Q  324 aatttcgtgcca 335  Q
    ||||||||||||    
T  13883228 aatttcgtgcca 13883239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 224 - 335
Target Start/End: Complemental strand, 31249243 - 31249132
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacactgga 323  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31249243 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacactgga 31249144  T
Q  324 aatttcgtgcca 335  Q
    ||||||||||||    
T  31249143 aatttcgtgcca 31249132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 224 - 335
Target Start/End: Complemental strand, 35201855 - 35201744
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacactgga 323  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35201855 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacactgga 35201756  T
Q  324 aatttcgtgcca 335  Q
    ||||||||||||    
T  35201755 aatttcgtgcca 35201744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 223 - 335
Target Start/End: Complemental strand, 26887755 - 26887643
Alignment:
Q  223 gtgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacactgg 322  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  26887755 gtgtgagagttaacttaaaatcagaaatctggagcatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggcagacactgg 26887656  T
Q  323 aaatttcgtgcca 335  Q
    |||||||||||||    
T  26887655 aaatttcgtgcca 26887643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 224 - 335
Target Start/End: Complemental strand, 30975228 - 30975117
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacactgga 323  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  30975228 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattccttggaagacattgga 30975129  T
Q  324 aatttcgtgcca 335  Q
    ||||||||||||    
T  30975128 aatttcgtgcca 30975117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 224 - 335
Target Start/End: Complemental strand, 30981667 - 30981556
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacactgga 323  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  30981667 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattccttggaagacattgga 30981568  T
Q  324 aatttcgtgcca 335  Q
    ||||||||||||    
T  30981567 aatttcgtgcca 30981556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 224 - 335
Target Start/End: Complemental strand, 30987831 - 30987720
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacactgga 323  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  30987831 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattccttggaagacattgga 30987732  T
Q  324 aatttcgtgcca 335  Q
    ||||||||||||    
T  30987731 aatttcgtgcca 30987720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 224 - 335
Target Start/End: Complemental strand, 35209090 - 35208979
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacactgga 323  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35209090 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacaatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacactgga 35208991  T
Q  324 aatttcgtgcca 335  Q
      ||||||||||    
T  35208990 tttttcgtgcca 35208979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 224 - 325
Target Start/End: Original strand, 16785572 - 16785673
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacactgga 323  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  16785572 tgtgagagttaacttaaaatcagaaatctggagcatcgtgccacgatcgaaaagcatcgcgccacgatggttgaagcaagattcctgggaagacactgga 16785671  T
Q  324 aa 325  Q
    ||    
T  16785672 aa 16785673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 224 - 335
Target Start/End: Original strand, 13878380 - 13878491
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacactgga 323  Q
    ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||    
T  13878380 tgtgagagttaacttaaaatcagaaatctggagcatcgtgccatgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagctactgga 13878479  T
Q  324 aatttcgtgcca 335  Q
    ||  ||||||||    
T  13878480 aaaatcgtgcca 13878491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 237 - 335
Target Start/End: Original strand, 25941330 - 25941428
Alignment:
Q  237 ttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacactggaaatttcgtgcca 335  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  ||||||||||||||||||    
T  25941330 ttaaaatcagaaatctggagaatcgtgccacgatggagaagcatcgcgccacgattgttgaagcaagattcctgggaagctactggaaatttcgtgcca 25941428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 224 - 307
Target Start/End: Complemental strand, 17695382 - 17695299
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattc 307  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  17695382 tgtgagagttaacttaaaatcagaattctggagaatcgtgccacgatggagaagcatcgcgccacgattgttgaagcaagattc 17695299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 224 - 335
Target Start/End: Complemental strand, 25466431 - 25466320
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacactgga 323  Q
    ||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||| ||||| || |||||||||||||||   |||||  ||||||    
T  25466431 tgtgagagttaacttaaaatcagaaatctagagaatcatgccacgatggagaagcatcgtgccacaattgttgaagcaagattctaaggaagctactgga 25466332  T
Q  324 aatttcgtgcca 335  Q
    ||||||||||||    
T  25466331 aatttcgtgcca 25466320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 224 - 307
Target Start/End: Complemental strand, 1230767 - 1230684
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattc 307  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||| |||||||| |||||||||| ||||    
T  1230767 tgtgagagttaacttaaaatcagaattctggagaatcgtgccacgatggagaagcttcgtgccacgattgttgaagcaaaattc 1230684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 224 - 307
Target Start/End: Original strand, 26064756 - 26064839
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattc 307  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||| |||||||| |||||||||| ||||    
T  26064756 tgtgagagttaacttaaaatcagaattctggagaatcgtgccacgatggagaagcttcgtgccacgattgttgaagcaaaattc 26064839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 224 - 307
Target Start/End: Original strand, 26084725 - 26084808
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattc 307  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||| |||||||| |||||||||| ||||    
T  26084725 tgtgagagttaacttaaaatcagaattctggagaatcgtgccacgatggagaagcttcgtgccacgattgttgaagcaaaattc 26084808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 224 - 335
Target Start/End: Complemental strand, 28241860 - 28241750
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacactgga 323  Q
    ||||||||||||||||||||||||| |||| || ||||||||||||||||||||| ||| |||||||| |||| ||||| | | ||||| | ||||||||    
T  28241860 tgtgagagttaacttaaaatcagaattctgaagaatcgtgccacgatggagaagcttcgtgccacgattgttggagcaa-agttctgggcaaacactgga 28241762  T
Q  324 aatttcgtgcca 335  Q
    ||  ||||||||    
T  28241761 aaaatcgtgcca 28241750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 223 - 307
Target Start/End: Original strand, 26642828 - 26642912
Alignment:
Q  223 gtgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattc 307  Q
    |||||||||||||||||||||||| ||||||||| | |||||||||||||||||| | || || ||||| |||||| ||||||||    
T  26642828 gtgtgagagttaacttaaaatcaggaatctggagaaacgtgccacgatggagaaggaacgtgcaacgattgttgaaacaagattc 26642912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 223 - 307
Target Start/End: Original strand, 26748794 - 26748878
Alignment:
Q  223 gtgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattc 307  Q
    |||||||||||||||||||||||| ||||||||| | |||||||||||||||||| | || || ||||| |||||| ||||||||    
T  26748794 gtgtgagagttaacttaaaatcaggaatctggagaaacgtgccacgatggagaaggaacgtgcaacgattgttgaaacaagattc 26748878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 228 - 302
Target Start/End: Complemental strand, 22343331 - 22343257
Alignment:
Q  228 agagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaa 302  Q
    ||||||||||||||||||||| ||||||| |||  |||||||||||||||| ||| |||||||| ||||||||||    
T  22343331 agagttaacttaaaatcagaattctggagaatcaagccacgatggagaagcttcgtgccacgattgttgaagcaa 22343257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 224 - 305
Target Start/End: Complemental strand, 13468036 - 13467955
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagat 305  Q
    ||||||||||||||||||||||| ||| ||||| | | | |||||||||||||||| || |||||||| |||||||||||||    
T  13468036 tgtgagagttaacttaaaatcaggaatttggagaaacataccacgatggagaagcaacgtgccacgattgttgaagcaagat 13467955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 224 - 270
Target Start/End: Original strand, 33215499 - 33215545
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgat 270  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||    
T  33215499 tgtgagagttaacttaaaatcagaaatctggagaatcgtgccacgat 33215545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 224 - 299
Target Start/End: Complemental strand, 15533220 - 15533145
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagta-tcgtgccacgatggagaagcatcgcgccacgatggttgaag 299  Q
    ||||||||||||||||||||||| | |||  || | ||||||||||||||||||||| || ||||||||||||||||    
T  15533220 tgtgagagttaacttaaaatcagga-tctacagaaatcgtgccacgatggagaagcaacgtgccacgatggttgaag 15533145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 224 - 307
Target Start/End: Complemental strand, 22352386 - 22352303
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattc 307  Q
    |||||||||||||||||||||  || ||| ||| ||||||| || |||||||||| ||| |||||||| |||||| ||| ||||    
T  22352386 tgtgagagttaacttaaaatctaaattctagagaatcgtgctacaatggagaagcttcgtgccacgattgttgaatcaaaattc 22352303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 272
Target Start/End: Complemental strand, 14507716 - 14507668
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatgg 272  Q
    ||||||||||||||||||||||||  |||| || |||||| ||||||||    
T  14507716 tgtgagagttaacttaaaatcagatttctgcagaatcgtggcacgatgg 14507668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 108; Significance: 3e-54; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 224 - 335
Target Start/End: Original strand, 11853202 - 11853313
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacactgga 323  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  11853202 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacattgga 11853301  T
Q  324 aatttcgtgcca 335  Q
    ||||||||||||    
T  11853302 aatttcgtgcca 11853313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 224 - 335
Target Start/End: Original strand, 31300074 - 31300185
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacactgga 323  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||||||||||||   |||||  ||||||    
T  31300074 tgtgagagttaacttaaaatcagaaatctggagaatcgtgccacgatggagaagcatcacgccacgattgttgaagcaagattctgaggaagctactgga 31300173  T
Q  324 aatttcgtgcca 335  Q
    ||||||||||||    
T  31300174 aatttcgtgcca 31300185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 222 - 307
Target Start/End: Original strand, 16488999 - 16489084
Alignment:
Q  222 ggtgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattc 307  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  16488999 ggtgtgagagttaacttaaaatcagaaatctggagaatcgtgccacgatggagaagcatcgcgccacgattgttgaagcaagattc 16489084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 224 - 335
Target Start/End: Original strand, 15316630 - 15316741
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacactgga 323  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |||||||||||||||   |||||  ||| ||    
T  15316630 tgtgagagttaacttaaaatcagaaatctggagaatcgtgccacgatggagaagcatcgcgtcacgattgttgaagcaagattctgaggaagctactaga 15316729  T
Q  324 aatttcgtgcca 335  Q
    ||||||||||||    
T  15316730 aatttcgtgcca 15316741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 224 - 335
Target Start/End: Original strand, 40636868 - 40636979
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacactgga 323  Q
    ||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||   |||||  ||||||    
T  40636868 tgtgagagttaacttaaaatcagaattttggagaatcgtgccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctactgga 40636967  T
Q  324 aatttcgtgcca 335  Q
    ||||||||||||    
T  40636968 aatttcgtgcca 40636979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 224 - 333
Target Start/End: Original strand, 15311994 - 15312103
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacactgga 323  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||||||||||   |||||  |||| |    
T  15311994 tgtgagagttaacttaaaatcagaaatctggagaatcgtgccacgatggagaagcatcgcaccacgattgttgaagcaagattctaaggaagctactgaa 15312093  T
Q  324 aatttcgtgc 333  Q
    ||||||||||    
T  15312094 aatttcgtgc 15312103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 228 - 335
Target Start/End: Original strand, 15830817 - 15830924
Alignment:
Q  228 agagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacactggaaatt 327  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||||||||||||   || ||  ||||||||||    
T  15830817 agagttaacttaaaatcagaaatctggagaatcgtgccacgatggagaagcatcacgccacgattgttgaagcaagattctgagggagctactggaaatt 15830916  T
Q  328 tcgtgcca 335  Q
    ||||||||    
T  15830917 tcgtgcca 15830924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 224 - 307
Target Start/End: Original strand, 18586616 - 18586699
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattc 307  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  18586616 tgtgagagttaacttaaaatcagaaatctggagaatcgtgccacgatggagaagcatcgcaccacgattgttgaagcaagattc 18586699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 223 - 307
Target Start/End: Original strand, 8528917 - 8529001
Alignment:
Q  223 gtgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattc 307  Q
    |||||||||||||||||||||||||  ||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||    
T  8528917 gtgtgagagttaacttaaaatcagatttctggagaatcgtgtcacgatggagaagcatcgcgccacgattgttgaagcaagattc 8529001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 224 - 307
Target Start/End: Original strand, 4884531 - 4884614
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattc 307  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || | |||||| |||||||||||||||    
T  4884531 tgtgagagttaacttaaaatcagaaatctggagaatcgtgccacgatggagaagcaacgtgtcacgattgttgaagcaagattc 4884614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 223 - 307
Target Start/End: Complemental strand, 8631963 - 8631879
Alignment:
Q  223 gtgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattc 307  Q
    |||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||| |||||||| |||||||||| ||||    
T  8631963 gtgtcagagttaacttaaaatcagaattctggagaatcgtgccacgatggagaagcttcgtgccacgattgttgaagcaaaattc 8631879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 224 - 307
Target Start/End: Original strand, 6764654 - 6764737
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattc 307  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||||| |||||| ||| |||||||| |||||||||| ||||    
T  6764654 tgtgagagttaacttaaaatcagaattctggagaatcgtgccacgatgtagaagcttcgtgccacgattgttgaagcaaaattc 6764737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 224 - 298
Target Start/End: Complemental strand, 4556585 - 4556511
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaa 298  Q
    ||||||||||||||||||||| |||| |||||| |||||||||||||||||||||| |  |||||||| ||||||    
T  4556585 tgtgagagttaacttaaaatctgaaaactggagaatcgtgccacgatggagaagcaacatgccacgattgttgaa 4556511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 224 - 302
Target Start/End: Original strand, 47868195 - 47868273
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaa 302  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||||| |||||| ||| | ||| || ||||||||||    
T  47868195 tgtgagagttaacttaaaatcagaattctggagaatcgtgccacgatgaagaagcttcgtgtcaccattgttgaagcaa 47868273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 226 - 307
Target Start/End: Complemental strand, 2485390 - 2485310
Alignment:
Q  226 tgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattc 307  Q
    ||||||||||||||||||||||  || |||| ||||||||||||||||||||| ||| |||||||| |||||||||| ||||    
T  2485390 tgagagttaacttaaaatcagat-tcaggagaatcgtgccacgatggagaagcttcgtgccacgattgttgaagcaaaattc 2485310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 224 - 303
Target Start/End: Complemental strand, 16689472 - 16689394
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaag 303  Q
    ||||||||||||||||||||| |||| |||||| ||||||||||||||||||||| |||  || |||| |||||||||||    
T  16689472 tgtgagagttaacttaaaatctgaaaactggagaatcgtgccacgatggagaagc-tcgttccgcgattgttgaagcaag 16689394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 224 - 305
Target Start/End: Original strand, 25699401 - 25699482
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagat 305  Q
    ||||||||||||||||||||||| |||| | || |  ||||||||||||||||||| || |||||||| |||||| ||||||    
T  25699401 tgtgagagttaacttaaaatcaggaatcagaagaaatgtgccacgatggagaagcaacgtgccacgattgttgaaacaagat 25699482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 224 - 304
Target Start/End: Complemental strand, 7050802 - 7050722
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaaga 304  Q
    ||||||||| | ||||||||||| ||||||||| | ||||||||||| |||||||| || |||||||| |||||| |||||    
T  7050802 tgtgagagtcagcttaaaatcaggaatctggagaaacgtgccacgatagagaagcaacgtgccacgattgttgaaacaaga 7050722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 224 - 276
Target Start/End: Complemental strand, 26086292 - 26086240
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaa 276  Q
    ||||||||||||||||||||||||| ||| ||| |||||||||||||||||||    
T  26086292 tgtgagagttaacttaaaatcagaattctagagaatcgtgccacgatggagaa 26086240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 256
Target Start/End: Original strand, 4569723 - 4569755
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggag 256  Q
    ||||||||||||||||||||||| |||||||||    
T  4569723 tgtgagagttaacttaaaatcaggaatctggag 4569755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 104; Significance: 8e-52; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 224 - 335
Target Start/End: Original strand, 2735858 - 2735969
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacactgga 323  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2735858 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacactgga 2735957  T
Q  324 aatttcgtgcca 335  Q
      ||||||||||    
T  2735958 tttttcgtgcca 2735969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 224 - 335
Target Start/End: Original strand, 39686636 - 39686747
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacactgga 323  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39686636 tgtgagagttaacttaaaatcagaaatctggagcatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacactgga 39686735  T
Q  324 aatttcgtgcca 335  Q
      ||||||||||    
T  39686736 tttttcgtgcca 39686747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 224 - 335
Target Start/End: Original strand, 45567062 - 45567173
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacactgga 323  Q
    |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  45567062 tgtgagcgttaacttaaaatcagaaatctggagcatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggcagacactgga 45567161  T
Q  324 aatttcgtgcca 335  Q
    ||||||||||||    
T  45567162 aatttcgtgcca 45567173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 224 - 323
Target Start/End: Original strand, 2740594 - 2740693
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacactgga 323  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  2740594 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcttgggaagacactgga 2740693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 224 - 335
Target Start/End: Original strand, 17462088 - 17462199
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacactgga 323  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||||||||    
T  17462088 tgtgagagttaacttaaaatcagaaatctggagcatcgtgccacgatggagaagcatcgcgccacgatggatgaagcaagattcctggtcagacactgga 17462187  T
Q  324 aatttcgtgcca 335  Q
    ||||||||||||    
T  17462188 aatttcgtgcca 17462199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 224 - 335
Target Start/End: Complemental strand, 22713026 - 22712915
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacactgga 323  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  ||||||    
T  22713026 tgtgagagttaacttaaaatcagaaatctggagaatcgtgccacgatggagaagcatcgcgccacgattgttgaagcaagattcctgggaagctactgga 22712927  T
Q  324 aatttcgtgcca 335  Q
    ||||||||||||    
T  22712926 aatttcgtgcca 22712915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 224 - 335
Target Start/End: Original strand, 39679698 - 39679809
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacactgga 323  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  39679698 tgtgagagttaacttaaaatcagaaatctggagcatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagatactgga 39679797  T
Q  324 aatttcgtgcca 335  Q
      ||||||||||    
T  39679798 tttttcgtgcca 39679809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 224 - 335
Target Start/End: Complemental strand, 22717756 - 22717645
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacactgga 323  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||   ||||||    
T  22717756 tgtgagagttaacttaaaatcagaaatctgaagtatcgtgccacgatggagaagcatcgcgccacgattgttgaagcaagattcctgggaaactactgga 22717657  T
Q  324 aatttcgtgcca 335  Q
    ||  ||||||||    
T  22717656 aaaatcgtgcca 22717645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 224 - 332
Target Start/End: Original strand, 30478666 - 30478774
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacactgga 323  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||   |||||  ||||||    
T  30478666 tgtgagagttaacttaaaatcagaaatctggagaatcgtgccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctactgga 30478765  T
Q  324 aatttcgtg 332  Q
    |||||||||    
T  30478766 aatttcgtg 30478774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 224 - 332
Target Start/End: Complemental strand, 12781751 - 12781643
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacactgga 323  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| |||||||||||||||   |||||  ||||||    
T  12781751 tgtgagagttaacttaaaatcagaaatctggataatcgtgccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctactgga 12781652  T
Q  324 aatttcgtg 332  Q
    |||||||||    
T  12781651 aatttcgtg 12781643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 224 - 335
Target Start/End: Complemental strand, 33674936 - 33674825
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacactgga 323  Q
    ||||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||  ||||||    
T  33674936 tgtgagagttaacttaaaatcagaaatctagagaatcgtgccacgatggagaagtatcgcgccacgattgttgaagtaagattcctgggaagctactgga 33674837  T
Q  324 aatttcgtgcca 335  Q
    ||  ||||||||    
T  33674836 aaaatcgtgcca 33674825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 224 - 335
Target Start/End: Complemental strand, 27518151 - 27518040
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacactgga 323  Q
    |||||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||  ||||||||||||||   |||||  ||||||    
T  27518151 tgtgagagttaacttaaaatcaaaattctggagaatcgtgccacgatggagaagcatcgcgccacgatttttgaagcaagattctgaggaagctactgga 27518052  T
Q  324 aatttcgtgcca 335  Q
    ||||||||||||    
T  27518051 aatttcgtgcca 27518040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 224 - 305
Target Start/End: Original strand, 17943210 - 17943291
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagat 305  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||    
T  17943210 tgtgagagttaacttaaaatcagaaatctggagaatcgtgccacgatggagaagcatcgcgccacgattgttgaagtaagat 17943291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 223 - 307
Target Start/End: Complemental strand, 20055301 - 20055217
Alignment:
Q  223 gtgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattc 307  Q
    |||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||| ||||||| |||||||||||||||    
T  20055301 gtgtgagagttaacttaaaatcagaattctggagaatcatgccacgatggagaagcatcgcaccacgattgttgaagcaagattc 20055217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 224 - 335
Target Start/End: Complemental strand, 20050554 - 20050443
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacactgga 323  Q
    |||||||||||||||||||||| || ||||||| ||||||||||||||||||||||||| |||||||| |||| ||||||||||   |||||  ||||||    
T  20050554 tgtgagagttaacttaaaatcaaaattctggagaatcgtgccacgatggagaagcatcgtgccacgattgttgcagcaagattctgaggaagctactgga 20050455  T
Q  324 aatttcgtgcca 335  Q
    | ||||||||||    
T  20050454 attttcgtgcca 20050443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 224 - 307
Target Start/End: Complemental strand, 35894771 - 35894688
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattc 307  Q
    ||||||||||||||||||||||||| ||||||| || || | |||||||||||||||||||||||||| |||||||||||||||    
T  35894771 tgtgagagttaacttaaaatcagaattctggagaattgtactacgatggagaagcatcgcgccacgattgttgaagcaagattc 35894688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 224 - 335
Target Start/End: Original strand, 38190649 - 38190761
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctg--ggaagacactg 321  Q
    |||||||||||| |||||||||| ||| ||||| | |||||||||||||||||||| || |||||||| |||||| ||||| |||||  | ||| |||||    
T  38190649 tgtgagagttaatttaaaatcaggaatatggagaaacgtgccacgatggagaagcaacgtgccacgattgttgaaacaaga-tcctgaagcaagtcactg 38190747  T
Q  322 gaaatttcgtgcca 335  Q
    |||| |||||||||    
T  38190748 gaaaattcgtgcca 38190761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 224 - 305
Target Start/End: Complemental strand, 37171283 - 37171202
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagat 305  Q
    |||||||||||||||||||| || ||||||||| | |||||||||||||||||||| || |||| ||| |||||| ||||||    
T  37171283 tgtgagagttaacttaaaataaggaatctggagaaacgtgccacgatggagaagcaacgtgccatgattgttgaaacaagat 37171202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 226 - 276
Target Start/End: Complemental strand, 5377948 - 5377898
Alignment:
Q  226 tgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaa 276  Q
    ||||||||||||||||||||||| ||||||| ||||||| |||||||||||    
T  5377948 tgagagttaacttaaaatcagaattctggagaatcgtgctacgatggagaa 5377898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 224 - 270
Target Start/End: Complemental strand, 45280503 - 45280457
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgat 270  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||||    
T  45280503 tgtgagagttaacttaaaatcagaattctggagaatcgtgccacgat 45280457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 270
Target Start/End: Original strand, 17932328 - 17932373
Alignment:
Q  225 gtgagagttaacttaaaatcagaaatctggagtatcgtgccacgat 270  Q
    ||||||||||||||||||||||||||||| || |||||||||||||    
T  17932328 gtgagagttaacttaaaatcagaaatctgaagaatcgtgccacgat 17932373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 104; Significance: 8e-52; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 224 - 335
Target Start/End: Original strand, 9526117 - 9526228
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacactgga 323  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  9526117 tgtgagagttaacttaaaatcagaaatctggagcatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagatttctgggaagacactgga 9526216  T
Q  324 aatttcgtgcca 335  Q
    ||||||||||||    
T  9526217 aatttcgtgcca 9526228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 224 - 335
Target Start/End: Original strand, 9521367 - 9521478
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacactgga 323  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  ||||||    
T  9521367 tgtgagagttaacttaaaatcagaaatctggagaatcgtgccacgatggagaagcatcgcgccacgattgttgaagcaagattcctgggaagctactgga 9521466  T
Q  324 aatttcgtgcca 335  Q
    ||||||||||||    
T  9521467 aatttcgtgcca 9521478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 224 - 335
Target Start/End: Original strand, 2232262 - 2232373
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacactgga 323  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||    
T  2232262 tgtgagagttaacttaaaatcagaaatctggagcatcatgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagctactgga 2232361  T
Q  324 aatttcgtgcca 335  Q
    ||  ||||||||    
T  2232362 aaaatcgtgcca 2232373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 223 - 335
Target Start/End: Complemental strand, 21353858 - 21353746
Alignment:
Q  223 gtgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacactgg 322  Q
    ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||   |||||  |||||    
T  21353858 gtgtgggagttaacttaaaatcagaaatctggagaatcgtgccacgatggagaagcatcgcgccacgattgttgaagcaagattctgaggaagctactgg 21353759  T
Q  323 aaatttcgtgcca 335  Q
    || ||||||||||    
T  21353758 aattttcgtgcca 21353746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 224 - 307
Target Start/End: Complemental strand, 2393812 - 2393729
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattc 307  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || ||||||||| |||||||||||||||    
T  2393812 tgtgagagttaacttaaaatcagaaatctggagaatcgtgccacgatggagaagcttcacgccacgattgttgaagcaagattc 2393729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 224 - 307
Target Start/End: Complemental strand, 2401726 - 2401643
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattc 307  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |  ||||||||| |||||||||||||||    
T  2401726 tgtgagagttaacttaaaatcagaaatctggagaatcgtgccacgatggagaagcttttcgccacgattgttgaagcaagattc 2401643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 224 - 307
Target Start/End: Original strand, 2617280 - 2617363
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattc 307  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||  ||| |||||||| |||||||||| ||||    
T  2617280 tgtgagagttaacttaaaatcagaattctggagaatcgtgccacgatggagaagtttcgtgccacgattgttgaagcaaaattc 2617363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 224 - 305
Target Start/End: Original strand, 25133681 - 25133762
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagat 305  Q
    ||||||||||||||||||||||| ||||||||| | |||| ||||||||||||||| || |||||||| |||||||||||||    
T  25133681 tgtgagagttaacttaaaatcaggaatctggagaaacgtgtcacgatggagaagcaacgtgccacgattgttgaagcaagat 25133762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 224 - 291
Target Start/End: Complemental strand, 23689384 - 23689317
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgat 291  Q
    |||||||||||||||||||||| |||||| ||| ||| ||||||||||||||||||||||||||||||    
T  23689384 tgtgagagttaacttaaaatcaaaaatctagagaatcatgccacgatggagaagcatcgcgccacgat 23689317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 272
Target Start/End: Original strand, 20291280 - 20291328
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatgg 272  Q
    ||||||||||||||||||||||||  |||| || |||||| ||||||||    
T  20291280 tgtgagagttaacttaaaatcagatttctgcagaatcgtggcacgatgg 20291328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0209 (Bit Score: 96; Significance: 5e-47; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 224 - 335
Target Start/End: Complemental strand, 17496 - 17385
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacactgga 323  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||  ||||||    
T  17496 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatagagaagcatcgcgccacgattgttgaagcaagattcctgggaagctactgga 17397  T
Q  324 aatttcgtgcca 335  Q
    ||||||||||||    
T  17396 aatttcgtgcca 17385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 96; Significance: 5e-47; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 224 - 335
Target Start/End: Complemental strand, 35385962 - 35385851
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacactgga 323  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  ||||||    
T  35385962 tgtgagagttaacttaaaatcagaaatctagagtatcgtgccacgatggagaagcatcgcgccacgattgttgaagcaagattcctgggaagctactgga 35385863  T
Q  324 aatttcgtgcca 335  Q
    ||||||||||||    
T  35385862 aatttcgtgcca 35385851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 230 - 335
Target Start/End: Original strand, 1170470 - 1170575
Alignment:
Q  230 agttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacactggaaatttc 329  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||||| |||||||    
T  1170470 agttaacttaaaatcagaaatctggagcatcgtgccacgatggagaagcatcgcgccacaatggctgaagcaagattcctgggcagacactgaaaatttc 1170569  T
Q  330 gtgcca 335  Q
    ||||||    
T  1170570 gtgcca 1170575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 224 - 335
Target Start/End: Original strand, 25452146 - 25452257
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacactgga 323  Q
    |||||||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||  ||||||    
T  25452146 tgtgagagttaacttaaaattagaaatatggagaatcgtgccacgatggagaagcatcgcgccacgattgatgaagcaagattcctgggaagctactgga 25452245  T
Q  324 aatttcgtgcca 335  Q
    ||||||||||||    
T  25452246 aatttcgtgcca 25452257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 224 - 307
Target Start/End: Complemental strand, 2298528 - 2298445
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattc 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  2298528 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgactgttgaagcaagattc 2298445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 224 - 307
Target Start/End: Original strand, 40222414 - 40222497
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattc 307  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |||||||| |||||||||||||||    
T  40222414 tgtgagagttaacttaaaatcagaaatctggagaatcgtgccacgatggagaagcaacgtgccacgattgttgaagcaagattc 40222497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 224 - 306
Target Start/End: Original strand, 42237954 - 42238036
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagatt 306  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |||||||| ||||||||||||||    
T  42237954 tgtgagagttaacttaaaatcagaaatctggagaatcgtgccacgatggagaagcaacgtgccacgattgttgaagcaagatt 42238036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 224 - 309
Target Start/End: Original strand, 25445219 - 25445304
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcct 309  Q
    |||||||||||||||||||| |||||||||||| ||||| ||| |||||||||||||||||||||||| | |||||||||||||||    
T  25445219 tgtgagagttaacttaaaattagaaatctggagaatcgtaccatgatggagaagcatcgcgccacgattgatgaagcaagattcct 25445304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 224 - 307
Target Start/End: Original strand, 1240078 - 1240161
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattc 307  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||| |||||||| |||||||||| ||||    
T  1240078 tgtgagagttaacttaaaatcagaattctggagaatcgtgccacgatggagaagcttcgtgccacgattgttgaagcaaaattc 1240161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 224 - 307
Target Start/End: Original strand, 6747044 - 6747127
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattc 307  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||| |||||||| |||||||||| ||||    
T  6747044 tgtgagagttaacttaaaatcagaattctggagaatcgtgccacgatggagaagcttcgtgccacgattgttgaagcaaaattc 6747127  T

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Target: chr5; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 224 - 335
Target Start/End: Original strand, 22672504 - 22672615
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacactgga 323  Q
    |||||||||||||||||||| |||| ||||||| |||||||||||||||| |||||| ||||||| || |||||||||||||||   || ||  ||||||    
T  22672504 tgtgagagttaacttaaaattagaattctggagaatcgtgccacgatggaaaagcattgcgccacaattgttgaagcaagattctgagggagttactgga 22672603  T
Q  324 aatttcgtgcca 335  Q
    ||||||||||||    
T  22672604 aatttcgtgcca 22672615  T

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Target: chr5; HSP #11
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 223 - 307
Target Start/End: Complemental strand, 10529639 - 10529555
Alignment:
Q  223 gtgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattc 307  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||| ||| |||||||| |||||||||| ||||    
T  10529639 gtgtgagagttaacttaaaatcagaattctggagaatcgtgccacgatcgagaagcttcgtgccacgattgttgaagcaaaattc 10529555  T

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Target: chr5; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 223 - 307
Target Start/End: Original strand, 6744800 - 6744884
Alignment:
Q  223 gtgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattc 307  Q
    ||||||||||||| |||||||||||| ||||||| ||||||||||||||||||| | ||| |||||||| |||||||||| ||||    
T  6744800 gtgtgagagttaatttaaaatcagaattctggagaatcgtgccacgatggagaaacttcgtgccacgattgttgaagcaaaattc 6744884  T

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Target: chr5; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 224 - 307
Target Start/End: Original strand, 4409797 - 4409880
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattc 307  Q
    ||||| ||||||||||||||||||  |||| || |||||||||||||| |||||| ||| |||||||| |||||||||| ||||    
T  4409797 tgtgaaagttaacttaaaatcagagttctgaagaatcgtgccacgatgaagaagcttcgtgccacgattgttgaagcaaaattc 4409880  T

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Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 307
Target Start/End: Original strand, 39854226 - 39854307
Alignment:
Q  226 tgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattc 307  Q
    |||||||||||||||||| |||| ||||||| |||||| || ||| ||||||  ||| |||||||| |||||||||| ||||    
T  39854226 tgagagttaacttaaaattagaattctggagaatcgtgtcatgatagagaagtttcgtgccacgattgttgaagcaaaattc 39854307  T

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Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 279
Target Start/End: Complemental strand, 17841816 - 17841766
Alignment:
Q  229 gagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagca 279  Q
    ||||||| |||||||||| ||||||||| | |||| |||||||||||||||    
T  17841816 gagttaatttaaaatcaggaatctggagaaacgtgtcacgatggagaagca 17841766  T

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Target: scaffold0006 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 241 - 335
Target Start/End: Original strand, 224510 - 224604
Alignment:
Q  241 aatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacactggaaatttcgtgcca 335  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  224510 aatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacactggaaatttcgtgcca 224604  T

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Target: scaffold1764 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: scaffold1764
Description:

Target: scaffold1764; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 224 - 335
Target Start/End: Original strand, 1108 - 1219
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacactgga 323  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||  ||||||    
T  1108 tgtgagagttaacttaaaatcagaaatctggagaatcgtgccacgatggagaagcatcgcgccacgattgttgaagcaagattcttgggaagctactgga 1207  T
Q  324 aatttcgtgcca 335  Q
    ||||| ||||||    
T  1208 aattttgtgcca 1219  T

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Target: scaffold0256 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 224 - 335
Target Start/End: Original strand, 15976 - 16087
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacactgga 323  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||  ||| ||    
T  15976 tgtgagagttaacttaaaatcagaaatctggagaatcgtgccacgatggagaagcatcgcgccacgattgttgaagcaagcttcctgggaagctactaga 16075  T
Q  324 aatttcgtgcca 335  Q
    ||||||||||||    
T  16076 aatttcgtgcca 16087  T

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Target: scaffold0131 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 226 - 335
Target Start/End: Original strand, 30795 - 30904
Alignment:
Q  226 tgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacactggaaa 325  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||||||||    
T  30795 tgagagttaacttaaaatcagaaatctggagcatcgtgccacgatggagaagcatcgcgccaggatggttgaagcaagattcctgggaagctactggaaa 30894  T
Q  326 tttcgtgcca 335  Q
      ||||||||    
T  30895 aatcgtgcca 30904  T

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Target: scaffold0004 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 223 - 306
Target Start/End: Complemental strand, 188754 - 188671
Alignment:
Q  223 gtgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagatt 306  Q
    ||||||||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  188754 gtgtgagagttaacttaaaattagaaatctggagaatcgtgctacgatggagaagcatcgcgccacgattgttgaagcaagatt 188671  T

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Target: scaffold0552 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0552
Description:

Target: scaffold0552; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 224 - 307
Target Start/End: Complemental strand, 1349 - 1266
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattc 307  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||||| |||||| ||| |||||||| |||||||||| ||||    
T  1349 tgtgagagttaacttaaaatcagaattctggagaatcgtgccacgatgtagaagcttcgtgccacgattgttgaagcaaaattc 1266  T

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Target: scaffold0038 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 224 - 335
Target Start/End: Complemental strand, 42022 - 41912
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgccacgatggagaagcatcgcgccacgatggttgaagcaagattcctgggaagacactgga 323  Q
    ||||||||||||||||||||||||| |||| || ||||||||||||||||||||| ||| |||||||| |||| ||||| | | ||||| | ||||||||    
T  42022 tgtgagagttaacttaaaatcagaattctgaagaatcgtgccacgatggagaagcttcgtgccacgattgttggagcaa-agttctgggcaaacactgga 41924  T
Q  324 aatttcgtgcca 335  Q
    ||  ||||||||    
T  41923 aaaatcgtgcca 41912  T

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Target: scaffold0016 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 224 - 264
Target Start/End: Original strand, 120569 - 120609
Alignment:
Q  224 tgtgagagttaacttaaaatcagaaatctggagtatcgtgc 264  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  120569 tgtgagagttaacttaaaatcagaaatctggagtatcgtgc 120609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0691 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 223
Target Start/End: Original strand, 4252 - 4336
Alignment:
Q  139 tttactctattcaagcgactgaggttcagtctcttcaattttagaaaccctccaatttgaaaatgcaaaatttcaccatcgtagg 223  Q
    |||||| || |||||||||| || |||||| || ||||||||  ||| |||||| ||||||||||||||| ||| ||||| ||||    
T  4252 tttactttactcaagcgactaagattcagtgtcatcaattttttaaatcctccactttgaaaatgcaaaacttcgccatcatagg 4336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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