View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2761_high_22 (Length: 323)
Name: NF2761_high_22
Description: NF2761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2761_high_22 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 17 - 323
Target Start/End: Complemental strand, 6373829 - 6373522
Alignment:
| Q |
17 |
aagaataccgagactaccatttttagaaatgattgattagtagtaaacaaaagcagaaagtattataacatcagcacaagcaatcaaattaatcttatgc |
116 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
6373829 |
aagaatactgagactaccatttttagaaatgattgattagta---aacaaaagcggaaagtattataacatcaacacaagcaatcaaattaatcttatgc |
6373733 |
T |
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| Q |
117 |
tgatgttgtccaacccgaacttttaatgcataacagaagtatatgtctccccaagcttccgttgctgtcacggcccaatctgagatcatgaccgacgcaa |
216 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6373732 |
tgatgtcgtccaacccgaacttttaatgcataacagaagtatatgtctccccaagcttccgttgctgtcacggcccaatctgagatcatgaccgacgcaa |
6373633 |
T |
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| Q |
217 |
ggctaacagtaacacatcatacaattgtcctggatagcctaacttacactaac----acacgttactacagataaaaataattgccgaagataatatttt |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| | ||||||||||||| |
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| T |
6373632 |
agctaacagtaacacatcatacaattgtcctggatagcctaacttacactaacatgtacacgttactacaaataaaaataattgtcaaagataatatttt |
6373533 |
T |
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| Q |
313 |
ctaaacatttc |
323 |
Q |
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||||||||||| |
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| T |
6373532 |
ctaaacatttc |
6373522 |
T |
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