View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2761_high_27 (Length: 272)

Name: NF2761_high_27
Description: NF2761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2761_high_27
NF2761_high_27
[»] chr3 (26 HSPs)
chr3 (9-257)||(22458632-22458880)
chr3 (9-257)||(22481613-22481861)
chr3 (9-241)||(22468091-22468323)
chr3 (9-216)||(22630581-22630789)
chr3 (9-214)||(22442882-22443087)
chr3 (9-257)||(22358145-22358393)
chr3 (128-209)||(22615521-22615602)
chr3 (9-209)||(30989448-30989648)
chr3 (38-209)||(22179540-22179711)
chr3 (9-257)||(22635646-22635894)
chr3 (112-209)||(21937276-21937373)
chr3 (9-209)||(21945747-21945947)
chr3 (114-211)||(22436882-22436979)
chr3 (54-209)||(22028123-22028278)
chr3 (9-100)||(22368070-22368161)
chr3 (9-209)||(22115208-22115408)
chr3 (54-209)||(22187111-22187266)
chr3 (9-209)||(18967130-18967328)
chr3 (128-241)||(22431414-22431527)
chr3 (31-205)||(22052860-22053034)
chr3 (9-91)||(22353954-22354036)
chr3 (136-209)||(22034640-22034713)
chr3 (141-257)||(22368187-22368303)
chr3 (136-193)||(21930560-21930617)
chr3 (112-209)||(22648404-22648501)
chr3 (157-209)||(22657357-22657409)
[»] chr4 (1 HSPs)
chr4 (9-223)||(29610710-29610928)
[»] chr1 (2 HSPs)
chr1 (112-209)||(34980285-34980382)
chr1 (157-209)||(2305776-2305828)


Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 9 - 257
Target Start/End: Original strand, 22458632 - 22458880
Alignment:
Q  9 acatcatcaaaaactataacataccttttttcctgcaagtagttcctcacttcatcaaccaatgactctcgattcatttgatgaatactttgggggagat 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22458632 acatcatcaaaaactataacataccttttttcctgcaagtagttcctcacttcatcaaccaatgactctcgattcatttgatgaatactttgggggagat 22458731  T
Q  109 ttgctccttgttgttcgtaaaacttgtgcaacatgtccctcagcaatccttctatattgtatgattgagacactctgatccatacatgacaatcaaagtg 208  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22458732 ttgctccttgttgttcgtaaaacttgtgcagcatgtccctcagcaagccttctatattgtatgattgagacactctgatccatacatgacaatcaaagtg 22458831  T
Q  209 tttaacgatcttgttatcgtcaaaaaccttcttcgcaagagttgttttt 257  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  22458832 tttaacgatcttgttgtcgtcaaaaaccttctttgcaagagttgttttt 22458880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 9 - 257
Target Start/End: Original strand, 22481613 - 22481861
Alignment:
Q  9 acatcatcaaaaactataacataccttttttcctgcaagtagttcctcacttcatcaaccaatgactctcgattcatttgatgaatactttgggggagat 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22481613 acatcatcaaaaactataacataccttttttcctgcaagtagttcctcacttcatcaaccaatgactctcgattcatttgatgaatactttgggggagat 22481712  T
Q  109 ttgctccttgttgttcgtaaaacttgtgcaacatgtccctcagcaatccttctatattgtatgattgagacactctgatccatacatgacaatcaaagtg 208  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22481713 ttgctccttgttgttcgtaaaacttgtgcagcatgtccctcagcaagccttctatattgtatgattgagacactctgatccatacatgacaatcaaagtg 22481812  T
Q  209 tttaacgatcttgttatcgtcaaaaaccttcttcgcaagagttgttttt 257  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  22481813 tttaacgatcttgttgtcgtcaaaaaccttctttgcaagagttgttttt 22481861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 9 - 241
Target Start/End: Original strand, 22468091 - 22468323
Alignment:
Q  9 acatcatcaaaaactataacataccttttttcctgcaagtagttcctcacttcatcaaccaatgactctcgattcatttgatgaatactttgggggagat 108  Q
    ||||||||||| |||||||||||||||||| | ||||||||||| |||||||||||||| |||| || ||||| ||| ||||| | ||| || ||  |||    
T  22468091 acatcatcaaacactataacatacctttttccttgcaagtagtttctcacttcatcaactaatggctttcgatccatctgatggagactctgaggaggat 22468190  T
Q  109 ttgctccttgttgttcgtaaaacttgtgcaacatgtccctcagcaatccttctatattgtatgattgagacactctgatccatacatgacaatcaaagtg 208  Q
     | | |||||||||| |||||  | | |||| || ||||||| ||||  |||||||||||||| | |||||||  |||||||||||||||||||||| ||    
T  22468191 cttccccttgttgtttgtaaatatcgagcaaaatttccctcaacaatttttctatattgtatggtcgagacaccgtgatccatacatgacaatcaaaatg 22468290  T
Q  209 tttaacgatcttgttatcgtcaaaaaccttctt 241  Q
    |||||||| ||| |  | ||||||||| |||||    
T  22468291 tttaacgaccttttggttgtcaaaaactttctt 22468323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 9 - 216
Target Start/End: Original strand, 22630581 - 22630789
Alignment:
Q  9 acatcatcaaaaactataa-cataccttttttcctgcaagtagttcctcacttcatcaaccaatgactctcgattcatttgatgaatactttgggggaga 107  Q
    ||||||||||| |||| || | ||||||||| | ||||||||||| |||||||||||||| |||| || ||||| ||||||||| | |||||| ||  ||    
T  22630581 acatcatcaaacactacaaacgtacctttttccttgcaagtagtttctcacttcatcaactaatggctttcgatccatttgatggagactttgaggagga 22630680  T
Q  108 tttgctccttgttgttcgtaaaacttgtgcaacatgtccctcagcaatccttctatattgtatgattgagacactctgatccatacatgacaatcaaagt 207  Q
    | |   |||||||||| ||||| || | |||| |||||||||| ||||  |||||||||||||| | |||||||  |||||||| |||||||||||||||    
T  22630681 tctttcccttgttgtttgtaaatctcgagcaaaatgtccctcaacaatgtttctatattgtatggtcgagacaccgtgatccattcatgacaatcaaagt 22630780  T
Q  208 gtttaacga 216  Q
    |||||||||    
T  22630781 gtttaacga 22630789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 9 - 214
Target Start/End: Original strand, 22442882 - 22443087
Alignment:
Q  9 acatcatcaaaaactataacataccttttttcctgcaagtagttcctcacttcatcaaccaatgactctcgattcatttgatgaatactttgggggagat 108  Q
    ||||||||||| |||| ||||||||||||||| ||||||||||| |||||||||||||| ||||||| ||||| ||||||||| | ||| || ||  ||     
T  22442882 acatcatcaaacactacaacataccttttttcttgcaagtagtttctcacttcatcaactaatgactgtcgatccatttgatggagactctgaggaggaa 22442981  T
Q  109 ttgctccttgttgttcgtaaaacttgtgcaacatgtccctcagcaatccttctatattgtatgattgagacactctgatccatacatgacaatcaaagtg 208  Q
     |   | |||||||| |||||||| | |||  |||||||||| || |  ||| |||||| |||||||||||||  ||||||||| | |||| ||||||||    
T  22442982 ctttcctttgttgtttgtaaaactcgagcataatgtccctcaacactttttcaatattgaatgattgagacaccatgatccataaaagacagtcaaagtg 22443081  T
Q  209 tttaac 214  Q
     |||||    
T  22443082 cttaac 22443087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 9 - 257
Target Start/End: Original strand, 22358145 - 22358393
Alignment:
Q  9 acatcatcaaaaactataacataccttttttcctgcaagtagttcctcacttcatcaaccaatgactctcgattcatttgatgaatactttgggggagat 108  Q
    ||||||||||| |||| ||||||||||||||| ||||||||||| |||||||||||||| ||||||| ||||| ||||||| | | ||| || ||  ||     
T  22358145 acatcatcaaacactacaacataccttttttcttgcaagtagtttctcacttcatcaactaatgactgtcgatccatttgacggagactctgaggaggaa 22358244  T
Q  109 ttgctccttgttgttcgtaaaacttgtgcaacatgtccctcagcaatccttctatattgtatgattgagacactctgatccatacatgacaatcaaagtg 208  Q
     |   | |||||||| |||||||| | |||  |||||||||| || |  |||| ||||||||| | |||||||  | ||||||||| ||| |||||||||    
T  22358245 ctttcctttgttgtttgtaaaactcgagcataatgtccctcaacactttttctgtattgtatggtcgagacaccgtaatccatacacgacgatcaaagtg 22358344  T
Q  209 tttaacgatcttgttatcgtcaaaaaccttcttcgcaagagttgttttt 257  Q
    ||| |||| |||    | ||||||||| |||||||| ||||| ||||||    
T  22358345 ttttacgacctttgggttgtcaaaaactttcttcgctagagtggttttt 22358393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 128 - 209
Target Start/End: Original strand, 22615521 - 22615602
Alignment:
Q  128 aaacttgtgcaacatgtccctcagcaatccttctatattgtatgattgagacactctgatccatacatgacaatcaaagtgt 209  Q
    ||||||| ||||||||||||||| ||| ||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||    
T  22615521 aaacttgcgcaacatgtccctcaacaacccttctatactgtatgattgagacactgtgatccatacacgacaatcaaagtgt 22615602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 9 - 209
Target Start/End: Original strand, 30989448 - 30989648
Alignment:
Q  9 acatcatcaaaaactataacataccttttttcctgcaagtagttcctcacttcatcaaccaatgactctcgattcatttgatgaata-ctttgggggaga 107  Q
    ||||||||||| || |  ||||||||||||  | |||||||||| ||||||||||||  ||||||| |||||| |||||||  |||| | || || | ||    
T  30989448 acatcatcaaacacaacgacatacctttttaaccgcaagtagtttctcacttcatcagtcaatgaccctcgatccatttgaaaaatatccttaggag-ga 30989546  T
Q  108 tttgctccttgttgttcgtaaaacttgtgcaacatgtccctcagcaatccttctatattgtatgattgagacactctgatccatacatgacaatcaaagt 207  Q
    | | || | | ||||| |||||||||  ||||||||||||||| ||| ||||| | | | ||||||||||||||| ||||||||||| ||||||||||||    
T  30989547 tcttcttcgttttgtttgtaaaactttagcaacatgtccctcaacaacccttcaacagtatatgattgagacactatgatccatacacgacaatcaaagt 30989646  T
Q  208 gt 209  Q
    ||    
T  30989647 gt 30989648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 38 - 209
Target Start/End: Complemental strand, 22179711 - 22179540
Alignment:
Q  38 ttcctgcaagtagttcctcacttcatcaaccaatgactctcgattcatttgatgaatactttgggggagatttg-ctccttgttgttcgtaaaacttgtg 136  Q
    |||||||||||| || |||||||||| |  ||||||||| ||||||||||||  |||||  | ||| ||||||  |||||| ||||| | ||| |||  |    
T  22179711 ttcctgcaagtaatttctcacttcattagtcaatgactcccgattcatttgagaaataccctcggg-agatttcactcctttttgtttgcaaatctttag 22179613  T
Q  137 caacatgtccctcagcaatccttctatattgtatgattgagacactctgatccatacatgacaatcaaagtgt 209  Q
    ||||||||| |||| |||||||||   ||| ||||||||||||||| | ||||||||| ||||||||||||||    
T  22179612 caacatgtctctcaacaatccttcagcattatatgattgagacactgtaatccatacacgacaatcaaagtgt 22179540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 9 - 257
Target Start/End: Original strand, 22635646 - 22635894
Alignment:
Q  9 acatcatcaaaaactataacataccttttttcctgcaagtagttcctcacttcatcaaccaatgactctcgattcatttgatgaatactttgggggagat 108  Q
    ||||||||||| |||| ||||||||||||| | || |||| ||| |||||||||||||| ||||||| ||||| ||||||||| | ||| |  ||  ||     
T  22635646 acatcatcaaacactaaaacatacctttttccttgaaagtggtttctcacttcatcaactaatgactttcgatccatttgatggagactctcaggaggaa 22635745  T
Q  109 ttgctccttgttgttcgtaaaacttgtgcaacatgtccctcagcaatccttctatattgtatgattgagacactctgatccatacatgacaatcaaagtg 208  Q
     | | |||||||||| |||||||| | |||  ||||| | || || |  |||| ||||||||| | |||||||  | ||||||||| ||||||||||||     
T  22635746 cttccccttgttgtttgtaaaactcgagcataatgtctcgcaacactttttctgtattgtatggtcgagacaccgtaatccatacacgacaatcaaagta 22635845  T
Q  209 tttaacgatcttgttatcgtcaaaaaccttcttcgcaagagttgttttt 257  Q
    ||| |||| |||    | ||||||||| |||||||| ||||| ||||||    
T  22635846 ttttacgacctttgggttgtcaaaaactttcttcgctagagtggttttt 22635894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 112 - 209
Target Start/End: Complemental strand, 21937373 - 21937276
Alignment:
Q  112 ctccttgttgttcgtaaaacttgtgcaacatgtccctcagcaatccttctatattgtatgattgagacactctgatccatacatgacaatcaaagtgt 209  Q
    |||||| ||||| |||||||||| ||||||||||| ||| ||| ||||| | ||  |||| |||||||||| ||||||||||| ||||||||||||||    
T  21937373 ctcctttttgtttgtaaaacttgagcaacatgtccttcaacaacccttcaacatcatatgcttgagacactgtgatccatacacgacaatcaaagtgt 21937276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 9 - 209
Target Start/End: Complemental strand, 21945947 - 21945747
Alignment:
Q  9 acatcatcaaaaactataacataccttttttcctgcaagtagttcctcacttcatcaaccaatgactctcgattcatttgatgaatactttgggggagat 108  Q
    ||||||||||| || | ||||||||| |||| ||||||||| || ||||||||||    |||| |||||||||||||||||  | ||   | ||| || |    
T  21945947 acatcatcaaagacgacaacatacctcttttgctgcaagtaatttctcacttcatttgtcaataactctcgattcatttgagaagtatcctcggg-aggt 21945849  T
Q  109 ttg-ctccttgttgttcgtaaaacttgtgcaacatgtccctcagcaatccttctatattgtatgattgagacactctgatccatacatgacaatcaaagt 207  Q
    ||| |||||| ||||| || ||  ||  ||||||||||||||| ||||||||| | ||  ||||||||||||||  ||||||||||| ||||||||||||    
T  21945848 ttgtctcctttttgtttgtgaagttttagcaacatgtccctcaacaatccttcaacatcatatgattgagacacagtgatccatacaagacaatcaaagt 21945749  T
Q  208 gt 209  Q
    ||    
T  21945748 gt 21945747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 114 - 211
Target Start/End: Original strand, 22436882 - 22436979
Alignment:
Q  114 ccttgttgttcgtaaaacttgtgcaacatgtccctcagcaatccttctatattgtatgattgagacactctgatccatacatgacaatcaaagtgttt 211  Q
    |||||||||| ||||| || | |||| |||||||||| ||||  |||| || ||||||||||||||||| |||||||||||||||| ||||| |||||    
T  22436882 ccttgttgtttgtaaatctcgagcaaaatgtccctcaacaatttttctttactgtatgattgagacactgtgatccatacatgacagtcaaattgttt 22436979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 54 - 209
Target Start/End: Complemental strand, 22028278 - 22028123
Alignment:
Q  54 ctcacttcatcaaccaatgactctcgattcatttgatgaatactttgggggagatttgctccttgttgttcgtaaaacttgtgcaacatgtccctcagca 153  Q
    ||||||||||||  ||||||||| ||||||||||||  |||||  | ||| ||  |  |||||| ||||| | ||| |||  |||||||||| |||| ||    
T  22028278 ctcacttcatcagtcaatgactcccgattcatttgagaaataccctcgggaagtgtcactcctttttgtttgcaaacctttagcaacatgtctctcaaca 22028179  T
Q  154 atccttctatattgtatgattgagacactctgatccatacatgacaatcaaagtgt 209  Q
    |||||||   ||| ||||||||||||||| | ||||||||| ||||||||||||||    
T  22028178 atccttcagaattatatgattgagacactgtaatccatacacgacaatcaaagtgt 22028123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 100
Target Start/End: Original strand, 22368070 - 22368161
Alignment:
Q  9 acatcatcaaaaactataacataccttttttcctgcaagtagttcctcacttcatcaaccaatgactctcgattcatttgatgaatactttg 100  Q
    ||||||||||| |||| ||| ||||||||| | ||||||||||| |||||||||||||| ||| ||| || || ||||||||||| ||||||    
T  22368070 acatcatcaaacactacaacgtacctttttccttgcaagtagtttctcacttcatcaactaataactttccatccatttgatgaagactttg 22368161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 209
Target Start/End: Complemental strand, 22115408 - 22115208
Alignment:
Q  9 acatcatcaaaaactataacataccttttttcctgcaagtagttcctcacttcatcaaccaatgactctcgattcatttgatgaatactttgggggagat 108  Q
    ||||||||||| || | ||| ||||| |||| ||||||||| || ||||||||||||   ||| |  |||||| |||||||| ||||||    ||  |||    
T  22115408 acatcatcaaacacgacaacgtacctctttttctgcaagtattttctcacttcatcagttaataatcctcgatccatttgataaatactcgaaggtggat 22115309  T
Q  109 ttgctccttgttgttcgtaaaacttgtgcaacatgtccctcagcaatccttctatattgtatgattgagacactctgatccatacatgacaatcaaagtg 208  Q
    |  |||||| ||||| |||||  ||  ||||||| ||||||| ||| ||||| |  |  ||||||||||||||| ||||||||||| |||||||||||||    
T  22115308 tgtctccttcttgtttgtaaatttttggcaacatatccctcaacaacccttcaacttcatatgattgagacactgtgatccatacacgacaatcaaagtg 22115209  T
Q  209 t 209  Q
    |    
T  22115208 t 22115208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 54 - 209
Target Start/End: Complemental strand, 22187266 - 22187111
Alignment:
Q  54 ctcacttcatcaaccaatgactctcgattcatttgatgaatactttgggggagatttgctccttgttgttcgtaaaacttgtgcaacatgtccctcagca 153  Q
    ||||||||||||  ||||||||| ||||||||||||  |||||  | |||  |  |  |||||| ||||| | ||| |||  |||||||||| |||| ||    
T  22187266 ctcacttcatcagtcaatgactcccgattcatttgagaaataccctcgggaggtgtctctcctttttgtttgcaaacctttagcaacatgtctctcaaca 22187167  T
Q  154 atccttctatattgtatgattgagacactctgatccatacatgacaatcaaagtgt 209  Q
    |||||||   ||| ||||||||||||||| | ||||||||| ||||||||||||||    
T  22187166 atccttcagaattatatgattgagacactgtaatccatacacgacaatcaaagtgt 22187111  T

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Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 209
Target Start/End: Original strand, 18967130 - 18967328
Alignment:
Q  9 acatcatcaaaaactataacataccttttttcctgcaagtagttcctcacttcatcaaccaatgactctcgattcatttgatgaatactttgggggagat 108  Q
    ||||||||||| || | ||||||||| || ||| | |||||||| || ||||||||   |||||||||||||| |||||||| |||||| || ||| |||    
T  18967130 acatcatcaaacacaacaacatacctcttatcccgtaagtagtttcttacttcatctgtcaatgactctcgatccatttgataaatactctgagggggat 18967229  T
Q  109 ttgctccttgttgttcgtaaaacttgtgcaacatgtccctcagcaatccttctatattgtatgattgagacactctgatccatacatgacaatcaaagtg 208  Q
        ||||| ||||| |||  ||||   ||||||||| || | ||| ||||||| ||  |||||||||||||  |||||||||| | |||||| ||||||    
T  18967230 cctttcctttttgtttgtatcactttatcaacatgtcgcttaacaacccttctacatcatatgattgagaca--ctgatccatataagacaattaaagtg 18967327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 241
Target Start/End: Original strand, 22431414 - 22431527
Alignment:
Q  128 aaacttgtgcaacatgtccctcagcaatccttctatattgtatgattgagacactctgatccatacatgacaatcaaagtgtttaacgatcttgttatcg 227  Q
    ||||||||||||||| | |  || ||||  ||||||||  |||| |||||||||| ||||||||| | |||||||||||||||||| || | |||| | |    
T  22431414 aaacttgtgcaacattttctgcaacaatttttctatatcatatggttgagacactgtgatccataaacgacaatcaaagtgtttaaggaccctgttgttg 22431513  T
Q  228 tcaaaaaccttctt 241  Q
    |||||||| |||||    
T  22431514 tcaaaaactttctt 22431527  T

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Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 205
Target Start/End: Complemental strand, 22053034 - 22052860
Alignment:
Q  31 accttttttcctgcaagtagttcctcacttcatcaaccaatgactctcgattcatttgatgaatactttgggggagatttgctccttgttgttcgtaaaa 130  Q
    |||| |||| ||||| ||| || ||||||||||||  |||||   |||||| |||||||| |||||| ||  || ||||  |||||| ||||| |||||     
T  22053034 acctctttttctgcaggtaatttctcacttcatcagtcaatgttcctcgatccatttgataaatactctgatggggattgtctcctttttgtttgtaaag 22052935  T
Q  131 cttgtgcaacatgtccctcagcaatccttctatattgtatgattgagacactctgatccatacatgacaatcaaa 205  Q
     ||  ||||||| ||||||| ||| ||||| | ||  ||||||||||||||| | ||||||||  ||||||||||    
T  22052934 ttttagcaacatttccctcaacaacccttcaacatcatatgattgagacactgtaatccatacccgacaatcaaa 22052860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 91
Target Start/End: Original strand, 22353954 - 22354036
Alignment:
Q  9 acatcatcaaaaactataacataccttttttcctgcaagtagttcctcacttcatcaaccaatgactctcgattcatttgatg 91  Q
    |||| |||||| |||| ||| ||||||||| | ||||||| ||| |||||||||||||| |||| || ||||| |||||||||    
T  22353954 acattatcaaacactacaacgtacctttttccttgcaagttgtttctcacttcatcaactaatggctttcgatccatttgatg 22354036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 209
Target Start/End: Complemental strand, 22034713 - 22034640
Alignment:
Q  136 gcaacatgtccctcagcaatccttctatattgtatgattgagacactctgatccatacatgacaatcaaagtgt 209  Q
    |||||||||| |||| |||||||||   ||| ||||||||||||||| | ||||||||| || |||||||||||    
T  22034713 gcaacatgtctctcaacaatccttcagaattatatgattgagacactgtaatccatacacgataatcaaagtgt 22034640  T

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Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 257
Target Start/End: Original strand, 22368187 - 22368303
Alignment:
Q  141 atgtccctcagcaatccttctatattgtatgattgagacactctgatccatacatgacaatcaaagtgtttaacgatcttgttatcgtcaaaaaccttct 240  Q
    |||||| ||||||||  |||| |||| |||| | |||| ||  ||||||||| | ||||||||||||||||||||| ||| |  | ||||||||| ||||    
T  22368187 atgtccttcagcaatttttctttattatatggtcgagaaaccgtgatccataaacgacaatcaaagtgtttaacgaccttttggttgtcaaaaactttct 22368286  T
Q  241 tcgcaagagttgttttt 257  Q
    | || ||||| ||||||    
T  22368287 tggctagagtggttttt 22368303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 136 - 193
Target Start/End: Complemental strand, 21930617 - 21930560
Alignment:
Q  136 gcaacatgtccctcagcaatccttctatattgtatgattgagacactctgatccatac 193  Q
    ||||||||||||||| ||| ||||| | ||  ||||||||||||||| ||||||||||    
T  21930617 gcaacatgtccctcaacaacccttcaacatcatatgattgagacactgtgatccatac 21930560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 209
Target Start/End: Original strand, 22648404 - 22648501
Alignment:
Q  112 ctccttgttgttcgtaaaacttgtgcaacatgtccctcagcaatccttctatattgtatgattgagacactctgatccatacatgacaatcaaagtgt 209  Q
    |||||| ||||| ||||| ||  | ||||||| | |||||||| |||||| ||| |||||||||  ||||| ||||||||||| || | |||||||||    
T  22648404 ctcctttttgtttgtaaagctcattcaacatgcctctcagcaacccttctgtatagtatgattgcaacactttgatccatacacgaaattcaaagtgt 22648501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 209
Target Start/End: Original strand, 22657357 - 22657409
Alignment:
Q  157 cttctatattgtatgattgagacactctgatccatacatgacaatcaaagtgt 209  Q
    ||||||||||||| ||||| |||||| ||||||| ||| |||| |||||||||    
T  22657357 cttctatattgtaagattgtgacactgtgatccaaacacgacattcaaagtgt 22657409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 9 - 223
Target Start/End: Original strand, 29610710 - 29610928
Alignment:
Q  9 acatcatcaaaaactataacataccttttttcctgcaagtagttcctcacttcatcaaccaatgac---tctcgattcatttgatgaatactttggggga 105  Q
    ||||| ||||| |||| ||  |||||||| ||||||||||| || ||||||||||| || || |||   ||||| | |||||||  ||||||||| ||      
T  29610710 acatcgtcaaacactacaaggtaccttttctcctgcaagtaatttctcacttcatcgactaacgacgactctcgctccatttgagaaatactttgaggag 29610809  T
Q  106 gatttgctccttgttgttcgtaaaa-cttgtgcaacatgtccctcagcaatccttctatattgtatgattgagacactctgatccatacatgacaatcaa 204  Q
    |||   |||| | ||||| |||||| ||| | ||||||| |||| |||||||||||||||||||||||||| || ||| ||||||||||| ||   ||||    
T  29610810 gatcatctcccttttgtttgtaaaaacttctccaacatgccccttagcaatccttctatattgtatgattgtgatactgtgatccatacacgattgtcaa 29610909  T
Q  205 agtgtttaacgatcttgtt 223  Q
    |||||| ||||| ||||||    
T  29610910 agtgttcaacgaccttgtt 29610928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 112 - 209
Target Start/End: Complemental strand, 34980382 - 34980285
Alignment:
Q  112 ctccttgttgttcgtaaaacttgtgcaacatgtccctcagcaatccttctatattgtatgattgagacactctgatccatacatgacaatcaaagtgt 209  Q
    |||||| ||||||||||| ||| | |||||||   ||||||||| |||| |||||||||||||| |||||| ||||||||||| |||| |||||||||    
T  34980382 ctcctttttgttcgtaaagcttcttcaacatgcgtctcagcaatacttcaatattgtatgattgtgacactgtgatccatacacgacattcaaagtgt 34980285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 209
Target Start/End: Original strand, 2305776 - 2305828
Alignment:
Q  157 cttctatattgtatgattgagacactctgatccatacatgacaatcaaagtgt 209  Q
    ||||||||||||||||||| |||| | ||||||||||| |||| |||||||||    
T  2305776 cttctatattgtatgattgtgacattgtgatccatacacgacattcaaagtgt 2305828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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