View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2761_high_29 (Length: 267)
Name: NF2761_high_29
Description: NF2761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2761_high_29 |
 | |
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| [»] scaffold1903 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 17 - 252
Target Start/End: Original strand, 33130206 - 33130441
Alignment:
| Q |
17 |
tcatcaaatgggtcactcactgataactctttttcattccatttgaattcaaaaccaaacccttctctttcgtggcgtttacttcatgaaaaaccagaca |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
33130206 |
tcatcaaatgggtcactcactgataactctttttcattccatttgaattcaaaaccaaacccttctctttcctggcgtttacttcatgaaaaaccagaca |
33130305 |
T |
|
| Q |
117 |
acaatgttcatcttaatctcatcaaacaggaacaggaacaagatgaagttgttgatggtgttggtgaagaagaaggtgaaacaattgatttcatgggtag |
216 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
33130306 |
acaatgttcatcttaatctcatcaaacaagaacaggaacaagatgaagttgttgatggtgttggtgaagaagaaggtgaaacaattgattttatgggtag |
33130405 |
T |
|
| Q |
217 |
gcctatttgtttcaagaggagattagaggaagaaac |
252 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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|
| T |
33130406 |
acctatttgtttcaagaggagattagaggaagaaac |
33130441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 185 - 252
Target Start/End: Complemental strand, 54670877 - 54670810
Alignment:
| Q |
185 |
gaagaaggtgaaacaattgatttcatgggtaggcctatttgtttcaagaggagattagaggaagaaac |
252 |
Q |
| |
|
|||||| || ||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||| |
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|
| T |
54670877 |
gaagaaagttaaacaattgatttcatgggtagggctttttgtttcacgaggagattagaggaagaaac |
54670810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 71 - 144
Target Start/End: Complemental strand, 54670974 - 54670901
Alignment:
| Q |
71 |
ccaaacccttctctttcgtggcgtttacttcatgaaaaaccagacaacaatgttcatcttaatctcatcaaaca |
144 |
Q |
| |
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||||| ||||||||||| ||| ||||||||||| |||||||||| || ||| |||| |||||||||| ||||| |
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|
| T |
54670974 |
ccaaatccttctctttcatggtgtttacttcattaaaaaccagataaaaatagtcatgttaatctcataaaaca |
54670901 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 161; Significance: 6e-86; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 17 - 252
Target Start/End: Complemental strand, 5568792 - 5568563
Alignment:
| Q |
17 |
tcatcaaatgggtcactcactgataactctttttcattccatttgaattcaaaaccaaacccttctctttcgtggcgtttacttcatgaaaaaccagaca |
116 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||| ||||||||| ||| | |
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|
| T |
5568792 |
tcatcaaatgggtcactcactaataactctttttcattccatttgaattcaaaatcaaacccttctctttcatggcatttactttatgaaaaactagata |
5568693 |
T |
|
| Q |
117 |
acaatgttcatcttaatctcatcaaacaggaacaggaacaagatgaagttgttgatggtgttggtgaagaagaaggtgaaacaattgatttcatgggtag |
216 |
Q |
| |
|
| ||||||||| |||||||||| ||||| ||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |
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|
| T |
5568692 |
aaaatgttcatgttaatctcataaaacaagaaca------agatgaagttgttgatggtgatggtgaagaagaaggttaaacaattgatttcatgggtag |
5568599 |
T |
|
| Q |
217 |
gcctatttgtttcaagaggagattagaggaagaaac |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
5568598 |
gcctatttgtttcaagaggagattagaggaagaaac |
5568563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 17 - 252
Target Start/End: Original strand, 3614981 - 3615210
Alignment:
| Q |
17 |
tcatcaaatgggtcactcactgataactctttttcattccatttgaattcaaaaccaaacccttctctttcgtggcgtttacttcatgaaaaaccagaca |
116 |
Q |
| |
|
|||||||||| ||||||||||| |||||| |||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||| | |
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|
| T |
3614981 |
tcatcaaatgagtcactcactggtaactccttttcattccatttgaattcaaaatcaaacccttctctttcatggcatttacttcatgaaaaaccagata |
3615080 |
T |
|
| Q |
117 |
acaatgttcatcttaatctcatcaaacaggaacaggaacaagatgaagttgttgatggtgttggtgaagaagaaggtgaaacaattgatttcatgggtag |
216 |
Q |
| |
|
| ||||||||| |||||||||| | |||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||||| |
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|
| T |
3615081 |
aaaatgttcatgttaatctcataa------aacaagaacaagatgaagttgttgatggtgatggtgaagaagaaggttaaacaattgattttatgggtag |
3615174 |
T |
|
| Q |
217 |
gcctatttgtttcaagaggagattagaggaagaaac |
252 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| |
|
|
| T |
3615175 |
gcctatttgtttcaagaggagatcagaggaagaaac |
3615210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 17 - 252
Target Start/End: Complemental strand, 35611564 - 35611338
Alignment:
| Q |
17 |
tcatcaaatgggtcactcactgataactctttttcattccatttgaattcaaaaccaaacccttctctttcgtggcgtttacttcatgaaaaaccagaca |
116 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||| ||||||||||||||||||||| | |
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|
| T |
35611564 |
tcatcaaatgggtcattcactgataactctttttcattccatttgaattcaaaatcaaactcttctctttcatggcatttacttcatgaaaaaccagata |
35611465 |
T |
|
| Q |
117 |
acaatgttcatcttaatctcatcaaacaggaacaggaacaagatgaagttgttgatggtgttggtgaagaagaaggtgaaacaattgatttcatgggtag |
216 |
Q |
| |
|
| ||||||||| |||||||||| ||||| |||||| ||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||| |
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|
| T |
35611464 |
aaaatgttcatgttaatctcataaaacaagaacag------gatgaagttgttgatggtgatggt---gaagaaggttaaacaattgatttcatgggtaa |
35611374 |
T |
|
| Q |
217 |
gcctatttgtttcaagaggagattagaggaagaaac |
252 |
Q |
| |
|
| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
35611373 |
acttatttgtttcatgaggagattagaggaagaaac |
35611338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1903 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: scaffold1903
Description:
Target: scaffold1903; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 17 - 252
Target Start/End: Complemental strand, 676 - 448
Alignment:
| Q |
17 |
tcatcaaatgggtcactcactgataactctttttcattccatttgaattcaaaaccaaacccttctctttcgtggcgtttacttcatgaaaaaccagaca |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||| | | |
|
|
| T |
676 |
tcatcaaatgggtcactcactgataactctttttcattccatttgaattcaaaatcaaacccttctctttcatggcatttacttcatgaaaaacca-ata |
578 |
T |
|
| Q |
117 |
acaatgttcatcttaatctcatcaaacaggaacaggaacaagatgaagttgttgatggtgttggtgaagaagaaggtgaaacaattgatttcatgggtag |
216 |
Q |
| |
|
| ||||||||| |||||||||| | |||| ||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
577 |
aaaatgttcatgttaatctcataa------aacaagaacaagatgaagttgttgatggtgatggtgaagaagaagattaaacaattgatttcatgggtag |
484 |
T |
|
| Q |
217 |
gcctatttgtttcaagaggagattagaggaagaaac |
252 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||| |
|
|
| T |
483 |
gcatatttgtttcaagaggagattagaggaagaaac |
448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 157; Significance: 1e-83; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 17 - 252
Target Start/End: Complemental strand, 9981572 - 9981343
Alignment:
| Q |
17 |
tcatcaaatgggtcactcactgataactctttttcattccatttgaattcaaaaccaaacccttctctttcgtggcgtttacttcatgaaaaaccagaca |
116 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||| || | | |
|
|
| T |
9981572 |
tcatcaaatgggtcactcaccgataactctttttcattccatttgaattcaaaatcaaacccttctctttcatggcatttacttcatgaaaaatcacata |
9981473 |
T |
|
| Q |
117 |
acaatgttcatcttaatctcatcaaacaggaacaggaacaagatgaagttgttgatggtgttggtgaagaagaaggtgaaacaattgatttcatgggtag |
216 |
Q |
| |
|
| ||||||||| |||||||||| ||| | |||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
9981472 |
aaaatgttcatgttaatctcataaaataagaacagga------tgaagttgttgatggtgatggtgaagaagaaggttaaacaattgatttcatgggtag |
9981379 |
T |
|
| Q |
217 |
gcctatttgtttcaagaggagattagaggaagaaac |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
9981378 |
gcctatttgtttcaagaggagattagaggaagaaac |
9981343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 178 - 252
Target Start/End: Original strand, 20855558 - 20855632
Alignment:
| Q |
178 |
tggtgaagaagaaggtgaaacaattgatttcatgggtaggcctatttgtttcaagaggagattagaggaagaaac |
252 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
20855558 |
tggtgaagaagatggttaaacaattgatttcatgtgtaggcctttttgtttcacgaggagattagaggaagaaac |
20855632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 178 - 252
Target Start/End: Original strand, 46355960 - 46356034
Alignment:
| Q |
178 |
tggtgaagaagaaggtgaaacaattgatttcatgggtaggcctatttgtttcaagaggagattagaggaagaaac |
252 |
Q |
| |
|
|||||||||||| ||| ||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
46355960 |
tggtgaagaagatggttaaacaattgattttatgggtaggcctttttgtttcacgaggagattagaggaagaaac |
46356034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 144; Significance: 8e-76; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 17 - 252
Target Start/End: Complemental strand, 15480570 - 15480335
Alignment:
| Q |
17 |
tcatcaaatgggtcactcactgataactctttttcattccatttgaattcaaaaccaaacccttctctttcgtggcgtttacttcatgaaaaaccagaca |
116 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||| |
|
|
| T |
15480570 |
tcatcaaatgggtgactcgctgataactctttttcattccatttgaattcaaaaccaaacccttctatttaatggtgtttacttcatgaaaaaccagaca |
15480471 |
T |
|
| Q |
117 |
acaatgttcatcttaatctcatcaaacaggaacaggaacaagatgaagttgttgatggtgttggtgaagaagaaggtgaaacaattgatttcatgggtag |
216 |
Q |
| |
|
||||||||||| ||||| | | | |||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
15480470 |
acaatgttcatgttaatgttaatatcttaaaacaagaacaagatgaagttgttgatggtgatggtgaagaggaaggtgaaacaattgatttcttgggtag |
15480371 |
T |
|
| Q |
217 |
gcctatttgtttcaagaggagattagaggaagaaac |
252 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |
|
|
| T |
15480370 |
acctatttgtttcaagaggagattggaggaagaaac |
15480335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 181 - 252
Target Start/End: Original strand, 14735365 - 14735436
Alignment:
| Q |
181 |
tgaagaagaaggtgaaacaattgatttcatgggtaggcctatttgtttcaagaggagattagaggaagaaac |
252 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
14735365 |
tgaagaagatggttaaacaattgatttcatgggtaggcctttttgtttcacgaggagattagaggaagaaac |
14735436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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