View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2761_high_3 (Length: 667)
Name: NF2761_high_3
Description: NF2761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2761_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-141; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 341 - 662
Target Start/End: Original strand, 32804516 - 32804838
Alignment:
| Q |
341 |
ataagttaaaattacaataactattttacaattaaattttctagactaaagattaatatcaacaaaaattacgaaaaaa-tgaatgtgtatccaactatc |
439 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||| |
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| T |
32804516 |
ataagttaaaattgcaataactattttacaattaaattttctagactaaagattaatatcaacaaaaattacaaaaaaaataaatgtgtatccaactatc |
32804615 |
T |
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| Q |
440 |
taacaagaacgtgtgagattaaagttatgtctaacaccaaccgacacttgtaattacatacgaacattctaacaccacaaccaaaactgcttccagaacc |
539 |
Q |
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||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| || ||||||||||| |
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| T |
32804616 |
taacaaggacgtatgagattaaagttatgtctaacaccaaccgacacttgtaattagatacgaacattctaacaccaccaccagcacaacttccagaacc |
32804715 |
T |
|
| Q |
540 |
tcccgaaagaactcctaaatatacaacttcgctctcacttctaggaaccatggctgctacggttcctttctctcttcttaggtacactattcactctttt |
639 |
Q |
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||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32804716 |
tccagaaagaactcctaaatatacaacttcactctcacttctaggaaccatggctgctacggttcctttctctcttcttaggtacactattcactctttt |
32804815 |
T |
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| Q |
640 |
gattcattcgtgtctgtgctgct |
662 |
Q |
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| T |
32804816 |
gattcattcgtgtgtgtgttgct |
32804838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 141 - 303
Target Start/End: Original strand, 32804295 - 32804446
Alignment:
| Q |
141 |
gtaacgacgccattgttgaacttgaaatttagcgggaaatgaaagattgttgaagaaatcgtttactccttttcatttaaaaagacagaaacgccccttc |
240 |
Q |
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| T |
32804295 |
gtaacgacgccattgttgaacttgaaatttagcgggaaatgaaagattgttgaagaaatcgtttactccttttcatttaaaaagacagaaacgccccttc |
32804394 |
T |
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| Q |
241 |
cataatggagttgtattgtatctgtttgttgccacgttgccatttttactcttccaaccataa |
303 |
Q |
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|| || ||||||||||||||||||||||| |||||| |||||||||||||||| |
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| T |
32804395 |
ca-----------tactgtatctgtttgttgccacgttggcattttaactcttccaaccataa |
32804446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 32804169 - 32804234
Alignment:
| Q |
18 |
ttagggacatagagtcgaagcctgaatagtagagaatgtcggcggcttcgaaaatggtttggcgag |
83 |
Q |
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| T |
32804169 |
ttagggacatagagtcgaagcctgaatagtagagaatgtcggcggcttcgaaaatggtttggcgag |
32804234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 592 - 648
Target Start/End: Original strand, 32811799 - 32811856
Alignment:
| Q |
592 |
gctgctacggttcctttctctcttcttaggt-acactattcactcttttgattcattc |
648 |
Q |
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| T |
32811799 |
gctgctacggttcctttctctcttattaggtaacaatattcactcttttgattcattc |
32811856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 49028986 - 49029051
Alignment:
| Q |
18 |
ttagggacatagagtcgaagcctgaatagtagagaatgtcggcggcttcgaaaatggtttggcgag |
83 |
Q |
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| T |
49028986 |
ttagggacatggagacgaagcctgaatcgaggagaatgtctgcggcgtcgaaaatggtttcgcgag |
49029051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 240
Target Start/End: Original strand, 49029196 - 49029248
Alignment:
| Q |
187 |
ttgttgaagaaatcgtttactccttttcatttaaaaagacagaaacgccccttc |
240 |
Q |
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||||||||||||||||| |||||||| |||| |||||||||||||| ||||||| |
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| T |
49029196 |
ttgttgaagaaatcgtt-actcctttccattcaaaaagacagaaacaccccttc |
49029248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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