View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2761_high_34 (Length: 250)
Name: NF2761_high_34
Description: NF2761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2761_high_34 |
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| [»] scaffold1903 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 124; Significance: 7e-64; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 107 - 238
Target Start/End: Original strand, 33129890 - 33130021
Alignment:
| Q |
107 |
atgcattctctttctaattctaatatgctacaaacatcctcttcatccttaccttattattctcactccacccattgttatttcccttgttcttgttgtt |
206 |
Q |
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| T |
33129890 |
atgcattctctttctaattctaatatgctacaaacatcctcttcatccttaccttattattctcactccacccattgttatttcccttgttcttgttgtt |
33129989 |
T |
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| Q |
207 |
gctgtttttaaacatacccgtaacttcaattt |
238 |
Q |
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| T |
33129990 |
gctgtttttaaacatatccataacttcaattt |
33130021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 112 - 238
Target Start/End: Complemental strand, 5569124 - 5569000
Alignment:
| Q |
112 |
ttctctttctaattctaatatgctacaaacatcctcttcatccttaccttattattctcactccacccattgttatttcccttgttcttgttgttgctgt |
211 |
Q |
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|||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| || || |||||||| ||| ||| |
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| T |
5569124 |
ttctctttctctttctaatatgctacaaaaatcttcttcatccttaccttattattctcactccacccattgt--ttatagtttttcttgttattgttgt |
5569027 |
T |
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| Q |
212 |
ttttaaacatacccgtaacttcaattt |
238 |
Q |
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|||| ||||||||| |||||||||||| |
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| T |
5569026 |
ttttgaacatacccataacttcaattt |
5569000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 124 - 238
Target Start/End: Original strand, 3614665 - 3614780
Alignment:
| Q |
124 |
ttctaatatgctacaaa---catcctcttcatccttaccttattattctcactccacccattgttatttcccttgttcttgttgttgctgtttttaaaca |
220 |
Q |
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| T |
3614665 |
ttctaatatgctacaaaaatcatcttcttcatccttaccttattattctcactccacccattgt--ttgtacttgttcttgttactgctgttttttaaca |
3614762 |
T |
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| Q |
221 |
tacccgtaacttcaattt |
238 |
Q |
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| T |
3614763 |
tacccataacttcaattt |
3614780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 124 - 238
Target Start/End: Complemental strand, 35611882 - 35611767
Alignment:
| Q |
124 |
ttctaatatgctacaaa---catcctcttcatccttaccttattattctcactccacccattgttatttcccttgttcttgttgttgctgtttttaaaca |
220 |
Q |
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||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||||| |||| |
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| T |
35611882 |
ttctaatatgctaaaaaaatcatcttcttcatccttaccttattattctcactccacccattgt--ttgtacttgttcttgttattgctgtttttgaaca |
35611785 |
T |
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| Q |
221 |
tacccgtaacttcaattt |
238 |
Q |
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| T |
35611784 |
tacccataactttaattt |
35611767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 124 - 238
Target Start/End: Complemental strand, 9981888 - 9981773
Alignment:
| Q |
124 |
ttctaatatgctacaaa---catcctcttcatccttaccttattattctcactccacccattgttatttcccttgttcttgttgttgctgtttttaaaca |
220 |
Q |
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||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||| ||||||| |||| |
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| T |
9981888 |
ttctaatatgctacaaaaatcatcttcttcatccttaccttattattctcactccacccattgt--ttgtacttgttcttgttattgttgtttttgaaca |
9981791 |
T |
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| Q |
221 |
tacccgtaacttcaattt |
238 |
Q |
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||||| |||||||||||| |
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| T |
9981790 |
tacccataacttcaattt |
9981773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 124 - 238
Target Start/End: Complemental strand, 15480928 - 15480811
Alignment:
| Q |
124 |
ttctaatatgctacaaacatc---ctcttcatccttaccttattattctcactccacccattgttatttcccttgttcttgttgttgctgtttttaaaca |
220 |
Q |
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||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||| ||| ||| |||| |
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| T |
15480928 |
ttctaatatgcaacaaacatcttcctcttcatccttaccttatcattctcactccacccattgttcatgtccttgttcttgttgttattgtctttgaaca |
15480829 |
T |
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| Q |
221 |
tacccgtaacttcaattt |
238 |
Q |
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||||| |||||||||||| |
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| T |
15480828 |
tacccataacttcaattt |
15480811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1903 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: scaffold1903
Description:
Target: scaffold1903; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 124 - 238
Target Start/End: Complemental strand, 959 - 844
Alignment:
| Q |
124 |
ttctaatatgctacaaa---catcctcttcatccttaccttattattctcactccacccattgttatttcccttgttcttgttgttgctgtttttaaaca |
220 |
Q |
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||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||| || |||||||||||| ||||||||||| |||| |
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| T |
959 |
ttctaatatgctacaaaaatcatcttcttcatccataccttattattctcactccacccattgt--ttgtacttgttcttgttattgctgtttttgaaca |
862 |
T |
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| Q |
221 |
tacccgtaacttcaattt |
238 |
Q |
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||| | |||||||||||| |
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| T |
861 |
tactcataacttcaattt |
844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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