View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2761_high_36 (Length: 250)

Name: NF2761_high_36
Description: NF2761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2761_high_36
NF2761_high_36
[»] chr5 (2 HSPs)
chr5 (30-239)||(21485824-21486036)
chr5 (58-218)||(29291485-29291645)
[»] chr8 (2 HSPs)
chr8 (13-157)||(17640510-17640654)
chr8 (58-218)||(35612184-35612344)
[»] chr2 (4 HSPs)
chr2 (58-218)||(24465873-24466033)
chr2 (58-218)||(4018462-4018622)
chr2 (5-67)||(26659366-26659428)
chr2 (58-218)||(8072381-8072541)
[»] scaffold0010 (1 HSPs)
scaffold0010 (58-176)||(238032-238150)
[»] chr3 (1 HSPs)
chr3 (5-135)||(25898088-25898218)
[»] chr1 (1 HSPs)
chr1 (57-167)||(30839619-30839729)
[»] chr6 (1 HSPs)
chr6 (58-218)||(21951038-21951198)


Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 30 - 239
Target Start/End: Complemental strand, 21486036 - 21485824
Alignment:
Q  30 actgacttccaagaaaccctttttaggaaaatatttggctttcagaatgcgagtgagtagggagttgggatcatttaagagtttttaacattgcttacca 129  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21486036 actggcttccaagaaaccctttttaggaaaatatttggctttcagaatgcgagtgagtagggagttgggatcatttaagagtttttaacattgcttacca 21485937  T
Q  130 agcatagagagcttaaaggcttcgatattgcgaaaacctagtccaccttgatttttatgacgagataatt---ttttctatctcatccaattgatcccgc 226  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||   |||||||||||||||||||||||||||    
T  21485936 agcatagagagcttaaaggcttcgatattgcgaaaacctagtccaccttgatttttatgatgagataatttttttttctatctcatccaattgatcccgc 21485837  T
Q  227 actttctgttctt 239  Q
    |||||||||||||    
T  21485836 actttctgttctt 21485824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 58 - 218
Target Start/End: Complemental strand, 29291645 - 29291485
Alignment:
Q  58 aaatatttggctttcagaatgcgagtgagtagggagttgggatcatttaagagtttttaacattgcttaccaagcatagagagcttaaaggcttcgatat 157  Q
    |||||||||||||| |||||||||||||||| |||| | || ||  | | ||||||  ||| ||||||||| ||||| || || ||||||||||| ||||    
T  29291645 aaatatttggctttgagaatgcgagtgagtaaggagctaggttctgtaaggagtttccaaccttgcttaccgagcatggatagattaaaggcttccatat 29291546  T
Q  158 tgcgaaaacctagtccaccttgatttttatgacgagataattttttctatctcatccaatt 218  Q
      | ||| || |||||||| ||| |||| ||| |||||| ||| ||| |||||||||||||    
T  29291545 ccctaaatccgagtccaccatgacttttgtgaagagatagtttgttccatctcatccaatt 29291485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 157
Target Start/End: Original strand, 17640510 - 17640654
Alignment:
Q  13 cttggattatgaccaatactgacttccaagaaaccctttttaggaaaatatttggctttcagaatgcgagtgagtagggagttgggatcatttaagagtt 112  Q
    ||||||||||| ||||||| | ||||||||||||||||  || ||||||||||||| || |||||||| || |||| | |||| ||||||| || |||||    
T  17640510 cttggattatgtccaataccggcttccaagaaacccttcctaagaaaatatttggcattgagaatgcgtgtaagtaagaagttaggatcatgtatgagtt 17640609  T
Q  113 tttaacattgcttaccaagcatagagagcttaaaggcttcgatat 157  Q
    |  ||| ||| || |||||||||||||| ||||| ||||| ||||    
T  17640610 tccaaccttgtttgccaagcatagagagattaaatgcttccatat 17640654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 58 - 218
Target Start/End: Complemental strand, 35612344 - 35612184
Alignment:
Q  58 aaatatttggctttcagaatgcgagtgagtagggagttgggatcatttaagagtttttaacattgcttaccaagcatagagagcttaaaggcttcgatat 157  Q
    |||||||||||||| |||||||||||||||| |||| | || ||  | | ||||||  ||| ||||||||| ||||| || || ||||||||||| ||||    
T  35612344 aaatatttggctttgagaatgcgagtgagtaaggagctaggttctgtaaggagtttccaaccttgcttaccgagcatggatagattaaaggcttccatat 35612245  T
Q  158 tgcgaaaacctagtccaccttgatttttatgacgagataattttttctatctcatccaatt 218  Q
      | ||| || |||||||| ||| |||| ||| |||||| ||| ||| |||||||||||||    
T  35612244 ccctaaatccgagtccaccatgacttttgtgaagagatagtttgttccatctcatccaatt 35612184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 58 - 218
Target Start/End: Complemental strand, 24466033 - 24465873
Alignment:
Q  58 aaatatttggctttcagaatgcgagtgagtagggagttgggatcatttaagagtttttaacattgcttaccaagcatagagagcttaaaggcttcgatat 157  Q
    |||||||||||||| |||||||||||||||| |||| | || ||  | | ||||||  ||| ||||||||| ||||| || || ||||||||||| ||||    
T  24466033 aaatatttggctttgagaatgcgagtgagtaaggagctaggttctgtaaggagtttccaaccttgcttaccgagcatggatagattaaaggcttccatat 24465934  T
Q  158 tgcgaaaacctagtccaccttgatttttatgacgagataattttttctatctcatccaatt 218  Q
      | ||| || |||||||| ||| |||| ||| |||||||||| ||| |||||||||||||    
T  24465933 ccctaaatccgagtccaccatgacttttgtgaagagataatttgttccatctcatccaatt 24465873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 58 - 218
Target Start/End: Original strand, 4018462 - 4018622
Alignment:
Q  58 aaatatttggctttcagaatgcgagtgagtagggagttgggatcatttaagagtttttaacattgcttaccaagcatagagagcttaaaggcttcgatat 157  Q
    |||||||||||||| |||||||||||||||| |||| | || ||  | | ||||||  ||| ||||||||| ||||| || || ||||||||||| ||||    
T  4018462 aaatatttggctttgagaatgcgagtgagtaaggagctaggttctgtaaggagtttccaaccttgcttaccgagcatggatagattaaaggcttccatat 4018561  T
Q  158 tgcgaaaacctagtccaccttgatttttatgacgagataattttttctatctcatccaatt 218  Q
      | ||| || |||||||| ||| |||| ||| |||||| ||| ||| |||||||||||||    
T  4018562 ccctaaatccgagtccaccatgacttttgtgaagagatagtttgttccatctcatccaatt 4018622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 67
Target Start/End: Complemental strand, 26659428 - 26659366
Alignment:
Q  5 atgtaaagcttggattatgaccaatactgacttccaagaaaccctttttaggaaaatatttgg 67  Q
    ||||||| ||||||||||||||||||  | |||| ||||||||||||||||| ||||||||||    
T  26659428 atgtaaaacttggattatgaccaatatcggcttcgaagaaaccctttttagggaaatatttgg 26659366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 218
Target Start/End: Original strand, 8072381 - 8072541
Alignment:
Q  58 aaatatttggctttcagaatgcgagtgagtagggagttgggatcatttaagagtttttaacattgcttaccaagcatagagagcttaaaggcttcgatat 157  Q
    |||||||| ||||| |||||||||||||||| |||| |||| ||  | | ||||||  ||| ||| ||||| ||||| || || ||||||||||| ||||    
T  8072381 aaatatttagctttgagaatgcgagtgagtaaggagctgggctctgtgaggagtttccaaccttgtttaccgagcatggaaagattaaaggcttccatat 8072480  T
Q  158 tgcgaaaacctagtccaccttgatttttatgacgagataattttttctatctcatccaatt 218  Q
      ||||| || || |||||  || |||||||    |||||||| | | |||||||||||||    
T  8072481 cacgaaatccgagaccaccacgagttttatgcaatgataatttatcccatctcatccaatt 8072541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 58 - 176
Target Start/End: Original strand, 238032 - 238150
Alignment:
Q  58 aaatatttggctttcagaatgcgagtgagtagggagttgggatcatttaagagtttttaacattgcttaccaagcatagagagcttaaaggcttcgatat 157  Q
    |||||||| ||||| ||||| |||||||||| |||| | |||||| ||| ||||||  ||| ||| | ||||||||||||||| || || ||||| || |    
T  238032 aaatatttagctttgagaattcgagtgagtaaggagctaggatcagttaggagtttccaaccttgttaaccaagcatagagaggttgaatgcttccatgt 238131  T
Q  158 tgcgaaaacctagtccacc 176  Q
    | |||||||| || |||||    
T  238132 tacgaaaaccaagaccacc 238150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 135
Target Start/End: Complemental strand, 25898218 - 25898088
Alignment:
Q  5 atgtaaagcttggattatgaccaatactgacttccaagaaaccctttttaggaaaatatttggctttcagaatgcgagtgagtagggagttgggatcatt 104  Q
    |||||||||||||||  ||||||||| |  | ||||||||| || ||||||| || ||||||||||| ||||| ||||| |||| |||| | | ||||||    
T  25898218 atgtaaagcttggatcgtgaccaatagttgcatccaagaaatcccttttagggaagtatttggctttgagaatacgagtaagtaaggagctagaatcatt 25898119  T
Q  105 taagagtttttaacattgcttaccaagcata 135  Q
     | ||||||  ||| ||| ||||| ||||||    
T  25898118 gaggagtttccaaccttgtttaccgagcata 25898088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 167
Target Start/End: Complemental strand, 30839729 - 30839619
Alignment:
Q  57 aaaatatttggctttcagaatgcgagtgagtagggagttgggatcatttaagagtttttaacattgcttaccaagcatagagagcttaaaggcttcgata 156  Q
    ||||||||| ||||| |||||  ||||||||| |||| | ||||| || | ||||||  ||| ||| ||||||||||||||||| || || ||||| ||     
T  30839729 aaaatattttgctttgagaatatgagtgagtaaggagctaggatctttgaggagtttccaaccttgtttaccaagcatagagagattgaaagcttccatg 30839630  T
Q  157 ttgcgaaaacc 167  Q
    || ||||||||    
T  30839629 tttcgaaaacc 30839619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 218
Target Start/End: Complemental strand, 21951198 - 21951038
Alignment:
Q  58 aaatatttggctttcagaatgcgagtgagtagggagttgggatcatttaagagtttttaacattgcttaccaagcatagagagcttaaaggcttcgatat 157  Q
    |||||||| ||||| |||||||||||||||| |||| |||| ||  | | ||||||  ||| ||| ||||| ||||| || || ||||||||||| ||||    
T  21951198 aaatatttagctttgagaatgcgagtgagtaaggagctgggctctgtgaggagtttccaaccttgtttaccgagcatggaaagattaaaggcttccatat 21951099  T
Q  158 tgcgaaaacctagtccaccttgatttttatgacgagataattttttctatctcatccaatt 218  Q
      ||||| || || |||||  || |||||||    |||||||| | | |||||||||||||    
T  21951098 cacgaaatccgagaccaccacgagttttatgcaatgataatttatcccatctcatccaatt 21951038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University