View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2761_high_9 (Length: 569)
Name: NF2761_high_9
Description: NF2761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2761_high_9 |
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| [»] scaffold0121 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 487; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 19 - 558
Target Start/End: Complemental strand, 39949391 - 39948855
Alignment:
| Q |
19 |
ctccacagaacagaatgcaattctttggtggttcagagatcagtccgtcaccaccagcagcaccaactgcagcatctggaaataatggtcatatgttata |
118 |
Q |
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| T |
39949391 |
ctccacataacagaatgcaattctttggtggttcagagatcagtccgtcaccaccagcagcaccaactgcagcatctggaaacaatggtcatatgttata |
39949292 |
T |
|
| Q |
119 |
tgttttcaataggaatggcatttgcttgctttataaagaatggaatcgccctcttcatactttaaatcctcatcaagatcacaagttaatgtttggtctt |
218 |
Q |
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| T |
39949291 |
tgttttcaataggaatggcatttgcttgctttataaagaatggaatcgccctcttcatactttaaatcctcatcaagatcacaagttaatgtttggtctt |
39949192 |
T |
|
| Q |
219 |
cttttttccctcaaatctttaactgctaagatagaccccactagtccccagaaaggtaaccttggtgttcctcagttacctggccaaggttgttcttttc |
318 |
Q |
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| T |
39949191 |
cttttttccctcaaatctttaactgctaagatagaccccactagtccccagaaaggtaaccttggtgttcctcagttacctggccaaggttgttcttttc |
39949092 |
T |
|
| Q |
319 |
acacttttcgtactaatacttacaaacttactttcatggaaactccttctggtatgaaggtaacatgtctgtcttattacctattatatccttattacat |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39949091 |
acacttttcgtactaatacttacaaacttactttcatggaaactccttctggtatcaaggtaacatgtctgtcttattacctattatatccttattacat |
39948992 |
T |
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| Q |
419 |
tcgtctgtctgtaacatatggtttatgatacaataatttgattcatatagccaatctcatttagtgggttaatgtttggttgttgtggtgaactggtggt |
518 |
Q |
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| T |
39948991 |
tcgtctgtctgtaacatacggtttatgatacaataatttgattcatatagccaatctcatttagtgggttaatgtttggttgttgttg-----ttgtggt |
39948897 |
T |
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| Q |
519 |
ga--tggtgggttaatgttttgtctattatcttattattcat |
558 |
Q |
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| T |
39948896 |
gaactggtgggttaatgttttgtctattatcttattattcat |
39948855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 1e-33; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 268 - 381
Target Start/End: Original strand, 17224179 - 17224292
Alignment:
| Q |
268 |
agaaaggtaaccttggtgttcctcagttacctggccaaggttgttcttttcacacttttcgtactaatacttacaaacttactttcatggaaactccttc |
367 |
Q |
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| T |
17224179 |
agaaaggaaaccttggtgtacctcagttacctggccaaggttgttcatttcacagttttcgcactaatacatacaaacttagtttcatggaaagtccttc |
17224278 |
T |
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| Q |
368 |
tggtatgaaggtaa |
381 |
Q |
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||| || ||||||| |
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| T |
17224279 |
tggaataaaggtaa |
17224292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 33 - 226
Target Start/End: Original strand, 17222243 - 17222430
Alignment:
| Q |
33 |
atgcaattctttggtggttcagagatcagtccgtcaccaccagcagcaccaactgcagcatctggaaataatggtcatatgttatatgttttcaatagga |
132 |
Q |
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| T |
17222243 |
atgcaattctttggtggttctgagataagtccgtcaccgcctgcg---ccgacggcatca---ggaaacaatgggcatatgttgtatgtgtttaatagga |
17222336 |
T |
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| Q |
133 |
atggcatttgcttgctttataaagaatggaatcgccctcttcatactttaaatcctcatcaagatcacaagttaatgtttggtcttcttttttc |
226 |
Q |
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| T |
17222337 |
atggtatttgtttgctttatagagagtggaatcgcccccttcatacattgaatgctcaacaagatcataagttgatgtttggtttgcttttttc |
17222430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 452 - 504
Target Start/End: Original strand, 51421957 - 51422009
Alignment:
| Q |
452 |
taatttgattcatatagccaatctcatttagtgggttaatgtttggttgttgt |
504 |
Q |
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| T |
51421957 |
taatttgatccatgtagccaatctcacttagtgggataaagcttggttgttgt |
51422009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0121 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0121
Description:
Target: scaffold0121; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 456 - 501
Target Start/End: Complemental strand, 40663 - 40618
Alignment:
| Q |
456 |
ttgattcatatagccaatctcatttagtgggttaatgtttggttgt |
501 |
Q |
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| T |
40663 |
ttgattcatgtagccgatctcatttagtgggataatgtttggttgt |
40618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 451 - 504
Target Start/End: Original strand, 4334988 - 4335041
Alignment:
| Q |
451 |
ataatttgattcatatagccaatctcatttagtgggttaatgtttggttgttgt |
504 |
Q |
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||||||| |||||| ||||| |||||||||||||| ||| ||||||||||||| |
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| T |
4334988 |
ataatttaattcatgtagccgatctcatttagtggaataaagtttggttgttgt |
4335041 |
T |
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