View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2761_low_1 (Length: 699)
Name: NF2761_low_1
Description: NF2761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2761_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 310; Significance: 1e-174; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 344 - 693
Target Start/End: Complemental strand, 21557917 - 21557569
Alignment:
| Q |
344 |
aggaaaagtatattagcacacaacttatcataaatgatagcgtcacatagcgaaaccaacaattagtagggtcctaaaaggagtttcactattttgatgt |
443 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||| |
|
|
| T |
21557917 |
aggaaaagtatattagcacacaacttatcataaatgatagcgtcacatagcgaaaccaacaattaatagggtcctaaaaggagtttcaccattttggtgt |
21557818 |
T |
|
| Q |
444 |
attgtatgaaaccctaaaccataaaacttaccctatttttacataagatattgtttgcacaagtggtcccatcattttggtttacatatatataaaatga |
543 |
Q |
| |
|
|||||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
21557817 |
attgtacgaaaccataaaccctaaaacttaccctatttttacataagatattgtttgcacaagtggtcc-atcattttggtttacatatatataaaatga |
21557719 |
T |
|
| Q |
544 |
tttttataggtgccctttatctttgtatatagctatgttagttctagctttaattcctttcaagagtacactttcaaattatggcataattttccatctt |
643 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21557718 |
tttttataggtgccctttatctttgtatatagctatgttagttctagctttaattcctttcaagagtacactttcaaattatggcataattttccatctt |
21557619 |
T |
|
| Q |
644 |
ttaacaccctttttgattgaattccatctccaaggcatcactcatctcat |
693 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
21557618 |
ttaacaccctttttgattgaattccatctccaaggcatcattcatttcat |
21557569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 21558256 - 21557991
Alignment:
| Q |
1 |
ctgaattttctgctttcttctctgatcttcctagcaatgacttcaatactctttttcaactccttcctccattagccaactatggtgttagcatggaaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21558256 |
ctgaattttctgctttcttctctgatcttcctagcaatgacttcaatactctttttcaactccttcctccattagccaactatggtgttagcatggaaga |
21558157 |
T |
|
| Q |
101 |
gtgtcttgctgctaataacacccgctcttacttcgcggctggtgtccccggatctttctaccggagactttttccggcgaggtcggttgatgttttccac |
200 |
Q |
| |
|
|||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
21558156 |
gtgtcttgctgctaataatactcgctcctacttcgcggctggtgtccccggatctttctaccggagactttttccggcgaggtctgttgatgttttccac |
21558057 |
T |
|
| Q |
201 |
tcagcattttcactgcattggttatctcaggtaatatatatatctatcaattcttgttaatatatcacca |
270 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
21558056 |
tcagcattttcactgcattggttatctcaggtaat----atatctatcaattcttgttaatatatcacca |
21557991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 20855419 - 20855189
Alignment:
| Q |
1 |
ctgaattttctgctttcttctctgatcttcctagcaatgacttcaatactctttttcaactccttcctccattagccaactatggtgttagcatggaaga |
100 |
Q |
| |
|
|||||||||| || | ||||||||||||||||||||||||||||| ||||| ||||| |||||||||||| | |||| ||||| ||||||||||||| |
|
|
| T |
20855419 |
ctgaattttcagcctatttctctgatcttcctagcaatgacttcaacactctctttcagctccttcctccacttgcca---atggtattagcatggaaga |
20855323 |
T |
|
| Q |
101 |
gtgtcttgctgctaataacacccgctcttacttcgcggctggtgtccccggatctttctaccggagactttttccggcgaggtcggttgatgttttccac |
200 |
Q |
| |
|
|||| | |||||| ||||| | || ||||| | || || || ||||| || || |||||||| ||||||||||||||||| ||||||||||| ||| |
|
|
| T |
20855322 |
gtgtttagctgctgataaccaaaggtcctactttgttgccggagttcccggttcgttttaccggaggctttttccggcgaggtctgttgatgtttttcac |
20855223 |
T |
|
| Q |
201 |
tcagcattttcactgcattggttatctcaggtaa |
234 |
Q |
| |
|
|| || |||| |||||||||||||| |||||| |
|
|
| T |
20855222 |
tctgcgttttgtttgcattggttatctaaggtaa |
20855189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 76; Significance: 9e-35; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 41003079 - 41002849
Alignment:
| Q |
1 |
ctgaattttctgctttcttctctgatcttcctagcaatgacttcaatactctttttcaactccttcctccattagccaactatggtgttagcatggaaga |
100 |
Q |
| |
|
|||||||||| || | ||||||||||||||||||||||||||||| ||||| ||||| |||||||||||| | |||| ||||||||||||||||||| |
|
|
| T |
41003079 |
ctgaattttcagcctatttctctgatcttcctagcaatgacttcaacactctctttcagctccttcctccacttgcca---atggtgttagcatggaaga |
41002983 |
T |
|
| Q |
101 |
gtgtcttgctgctaataacacccgctcttacttcgcggctggtgtccccggatctttctaccggagactttttccggcgaggtcggttgatgttttccac |
200 |
Q |
| |
|
|||| | |||||| ||||| | || ||||| | || || || ||||| || || || ||||| ||||||||||||||||| ||||||||||| ||| |
|
|
| T |
41002982 |
gtgtttagctgctgataaccaaaggtcctactttgttgccggagttcccggttcgttttatcggaggctttttccggcgaggtctgttgatgtttttcac |
41002883 |
T |
|
| Q |
201 |
tcagcattttcactgcattggttatctcaggtaa |
234 |
Q |
| |
|
|| || ||||| |||||||||||||| |||||| |
|
|
| T |
41002882 |
tctgcgttttctttgcattggttatctaaggtaa |
41002849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University