View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2761_low_10 (Length: 565)
Name: NF2761_low_10
Description: NF2761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2761_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 255; Significance: 1e-141; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 11 - 369
Target Start/End: Complemental strand, 141880 - 141526
Alignment:
| Q |
11 |
cagagaagagatccaaatgcnnnnnnngaactaaaaaatttgttaggttttgagagtaacaagagttgttggtggtaataaataattacctagaatggtt |
110 |
Q |
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| T |
141880 |
cagagaagagatccaaatgcaaaaaa-gaactaaaaaatttgttaggttttgagagtaacaagagttgttggtggtaataaataattacctagaatggtt |
141782 |
T |
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| Q |
111 |
tatggttacatgagtttgaaagggaccaaacctacctatttcatatagaataaatatgttacattgatatttgtgtaatgtgatatgaatgaatttttct |
210 |
Q |
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| T |
141781 |
tatggttacatgagtttgaaagggaccaaacctacctatttcatatagaataaatatgttacattgatatttgtgtaatgtgatatgaatgaattttgat |
141682 |
T |
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| Q |
211 |
tttgattctctctttgtctgtttgtgctctctgcttatgcatgtgctgctgctgtgacattannnnnnnnnnnnnnnngcaaattggaatcacgaatttt |
310 |
Q |
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| T |
141681 |
tttgattctctctttgtctgtttgtgctctctgcttatgcatgt---gctgttgtgacattattttttatttttatttggaaattggaatcacgaatttt |
141585 |
T |
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| Q |
311 |
gtgaaattaattttataaagggatattttatcttttaaaaacaacttggtcatgcgata |
369 |
Q |
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| T |
141584 |
gtgaaattaattttataaagggatattttatcttttaaaaacaacttggtcatgcgata |
141526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 393 - 547
Target Start/End: Complemental strand, 141501 - 141347
Alignment:
| Q |
393 |
attggtctcaagattttaagggaagatgtcataacggtgacaaagttctacacaagtgttttattatatttgattgtggtaagtgatttggttgtgacaa |
492 |
Q |
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| T |
141501 |
attggtctcaagattttaagggaagatgttataacggtgacaaagttctacacaagtgctttattatatttgattgtggtaagtgatttggttgtgacaa |
141402 |
T |
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| Q |
493 |
tattttgatgtagagtgcatatttgaatttagatcgccatattaccccttcttat |
547 |
Q |
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| T |
141401 |
tattttaatgtagagtgcatatttgaatttagatcgccatattaccccttcttat |
141347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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