View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2761_low_17 (Length: 403)
Name: NF2761_low_17
Description: NF2761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2761_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 114; Significance: 1e-57; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 210 - 385
Target Start/End: Complemental strand, 6251170 - 6250989
Alignment:
| Q |
210 |
gcttattctgttttttgaattcaaccttggatctgtgtttaggaaagaaattgataatgggtaggaaaagaaacgaggactgccggaaacacgttacaga |
309 |
Q |
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| T |
6251170 |
gcttattctgttttttgaattcaaccttggatctgtgtttaggaaagaaattgataatgggtaggaaaaaaaacgaggactgccggaaacacgttacaga |
6251071 |
T |
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| Q |
310 |
---agtagaaaa---taagaacacatggatatgcaattattgtaatgatatgtttagtggaggagcttctagaattgaagca |
385 |
Q |
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| T |
6251070 |
aggagtagaaaatggtcataattattggatatgcaattattgtaatgagaagtatagtggaggagcttctagaattgaagca |
6250989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 15 - 145
Target Start/End: Complemental strand, 6251367 - 6251235
Alignment:
| Q |
15 |
atgaaaaccaattaatcgtgtacaaattttcaactagatcctattttttccatgaaaagaagaaaataaactagaattttctatgtaaattatatcggtc |
114 |
Q |
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| T |
6251367 |
atgaaaaccaattaatcgtgtacaaattttcaactagatcctattttttccatgaaaagaagaaaataaactaaatttttctatgtaaattatatcggtc |
6251268 |
T |
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| Q |
115 |
ggtaaagatcaaat--tagtaccaaaaaataag |
145 |
Q |
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| T |
6251267 |
ggtaaagatcaaattatagtaccaaaaaataag |
6251235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 251 - 385
Target Start/End: Complemental strand, 6183574 - 6183440
Alignment:
| Q |
251 |
ggaaagaaattgataatgggtaggaaaagaaacgaggactgccggaaacacgttacagaagtagaaaataagaacacatggatatgcaattattgtaatg |
350 |
Q |
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| T |
6183574 |
ggaaagatattgataatgggtagaaaaaaaaacgaggactgccggaaacacgttacagaagtagaaaataagaatacatggatatgcaattattgtagta |
6183475 |
T |
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| Q |
351 |
atatgtttagtggaggagcttctagaattgaagca |
385 |
Q |
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| T |
6183474 |
ttgagtatagtggaggagcttctagaattgaagca |
6183440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 235 - 379
Target Start/End: Complemental strand, 6111482 - 6111338
Alignment:
| Q |
235 |
cttggatctgtgtttaggaaagaaattgataatgggtaggaaaagaaacgaggactgccggaaacacgttacagaagtagaaaataagaacacatggata |
334 |
Q |
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||||||||||||||||||||||| ||||||||||||||| || | ||||| ||||| ||||||| |||||| |||||||||| | ||||||| |
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| T |
6111482 |
cttggatctgtgtttaggaaagatattgataatgggtagaggaaaacacgagcactgctggaaacatgttacaagagtagaaaatggtcttaaatggata |
6111383 |
T |
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| Q |
335 |
tgcaattattgtaatgatatgtttagtggaggagcttctagaatt |
379 |
Q |
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| T |
6111382 |
tgcaattattgtaatgataagtttagtggaggagcttctagaatt |
6111338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 18 - 140
Target Start/End: Complemental strand, 6183841 - 6183721
Alignment:
| Q |
18 |
aaaaccaattaatcgtgtacaaattttcaactagatcctatttttt-ccatgaaaagaagaaaataaactagaattttctatgtaaattatatcggtcgg |
116 |
Q |
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|||||| |||||||||| |||||||||||||||||| ||||||||| |||||||||||| ||||||||||| ||||| |||||||||||||| || | |
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| T |
6183841 |
aaaaccgattaatcgtgcacaaattttcaactagattctatttttttccatgaaaagaa---aataaactagatatttctttgtaaattatatcgatcag |
6183745 |
T |
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| Q |
117 |
taaagatcaaattagtaccaaaaa |
140 |
Q |
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| T |
6183744 |
tgaagatcaaattagtaccaaaaa |
6183721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 294 - 385
Target Start/End: Complemental strand, 6210004 - 6209913
Alignment:
| Q |
294 |
ggaaacacgttacagaagtagaaaataagaacacatggatatgcaattattgtaatgatatgtttagtggaggagcttctagaattgaagca |
385 |
Q |
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| T |
6210004 |
ggaaacacgttacagaagtagaaaatggtcgtaaatggatatgcaaatattgtaatgataagtttagtggaggagcttcaagaattgaagca |
6209913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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