View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2761_low_22 (Length: 334)
Name: NF2761_low_22
Description: NF2761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2761_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 12790115 - 12790369
Alignment:
| Q |
1 |
ctagaaatttctctttttgggcaagtagagcctgatttaaccaaaacaagaaattatgaggtttcaattttctaatacgaaacaatcatttatttcttaa |
100 |
Q |
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| T |
12790115 |
ctagaaatttctctttttgggcaagtagagcctgatttaaccaaaacaagtaattatgaggtttcaattttctaatatgaaacaatcatttatttcttaa |
12790214 |
T |
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| Q |
101 |
tatggtggggtagcttgtggaagcaaagatgggatcaggttgattaataaggaaaggtaggtttgtgtcattgctttctatcttagctaaaaaagatggt |
200 |
Q |
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| T |
12790215 |
tatggtggggtagcttggggaagcaa-gatgggatcaggttgattaataaggaaaggtaggtttgtgtcattgctttctatcttagctaaaaaagatagt |
12790313 |
T |
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| Q |
201 |
caaatccaaatccaatccttttccttgaatttacctcaattatgtatcactacttt |
256 |
Q |
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| T |
12790314 |
caaatccaaatccaatccttttccttgaatttacctcaattatgtatcactacttt |
12790369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 12771349 - 12771646
Alignment:
| Q |
1 |
ctagaaatttctctttttgggcaagtagagcctgatttaaccaaaacaag-aaattatgaggtttcaattttctaatacgaaacaatcatttatttctta |
99 |
Q |
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| T |
12771349 |
ctagaaatttctctttttggggaagtagagtatgattttaccaaaacaagcaaattataaagt-----------aataccaaaacatcacttgtttctta |
12771437 |
T |
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| Q |
100 |
atatggtggggtagcttgtggaagcaaagatgggatcaggttgattaataaggaaaggtaggtttgtgtcattgctttc-tatcttagctaaaaaagatg |
198 |
Q |
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| T |
12771438 |
atatggtggggtagcttgtagaagcaa-gatgggatcaggttgattaataaggaaaggtaggtttgtgtctttgctttcctctctttgctaaaaaagata |
12771536 |
T |
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| Q |
199 |
gtcaaatccaaatccaatccttttccttgaatttacctcaattatgtatcactacttttgggggtgcttagtttctactttcattttattccttaaatct |
298 |
Q |
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| T |
12771537 |
gtcaaatccaaatccaatccttttccttgaatttacctcaattatgtatcactacttttgggggtgcttagtttctactttcttttgattccttaactct |
12771636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 273 - 317
Target Start/End: Original strand, 12790363 - 12790407
Alignment:
| Q |
273 |
ctactttcattttattccttaaatcttatttatttttaccctttt |
317 |
Q |
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| T |
12790363 |
ctactttcatttgattccttaaatcttatttatttttaccctttt |
12790407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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