View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2761_low_24 (Length: 322)
Name: NF2761_low_24
Description: NF2761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2761_low_24 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 263; Significance: 1e-146; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 18 - 304
Target Start/End: Original strand, 5111030 - 5111316
Alignment:
| Q |
18 |
gcaattgggttggtgttacttgtgatgaacatcatggaagagtaaatgcattgaatcttaataacatggaccttgaaggtacaatttctcctcaactggg |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
5111030 |
gcaattgggttggtgttacttgtgatgaacatcatggaagagtgaatgcattggatcttaataacatggaccttgaaggtacaatttctcctcaattggg |
5111129 |
T |
|
| Q |
118 |
aaatctttctttccttgttgttcttgatttacaaggcaatagtttctatggtgagttaccacatgagttacttcagttgaagagattgaaatggttggat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5111130 |
aaatctttctttccttgttgttcttgatttacaaggcaatagtttctatggtgagttaccacatgagttacttcagttgaagagattgaaatggttggat |
5111229 |
T |
|
| Q |
218 |
ttgagcaacaatgattttgttggagaaattccttcaaggataggggacttagcaaaacttcatcatttggatctttacttcaataat |
304 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
5111230 |
ttgagtgacaatgattttgttggagaaattccttcaaggataggggacttagcaaaacttcatcatttggatctttactttaataat |
5111316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 18 - 289
Target Start/End: Complemental strand, 5084041 - 5083770
Alignment:
| Q |
18 |
gcaattgggttggtgttacttgtgatgaacatcatggaagagtaaatgcattgaatcttaataacatggaccttgaaggtacaatttctcctcaactggg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
5084041 |
gcaattgggttggtgttacttgtgatgaacatcatggaagagtaaatgcattgaatcttagtaacatggaccttgaaggtacaatttcccctcaattggg |
5083942 |
T |
|
| Q |
118 |
aaatctttctttccttgttgttcttgatttacaaggcaatagtttctatggtgagttaccacatgagttacttcagttgaagagattgaaatggttggat |
217 |
Q |
| |
|
|||||| ||||||||||| |||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| || |
|
|
| T |
5083941 |
aaatctctctttccttgtatttcttgatctacaaggaaatagtttccatggtgagttaccacatgagttacttcagttgaagagattgaaattgttgaat |
5083842 |
T |
|
| Q |
218 |
ttgagcaacaatgattttgttggagaaattccttcaaggataggggacttagcaaaacttcatcatttggat |
289 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||| |
|
|
| T |
5083841 |
ttgagcaacaatgattttgttggagaaattccttcaaggataggggacttatcaaaacttcaacaattggat |
5083770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 18 - 289
Target Start/End: Original strand, 5094027 - 5094298
Alignment:
| Q |
18 |
gcaattgggttggtgttacttgtgatgaacatcatggaagagtaaatgcattgaatcttaataacatggaccttgaaggtacaatttctcctcaactggg |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
5094027 |
gcaattgggttggtgttacttgtgatgaacaccatggaagagtaaatgcattgaatcttagtagcatgggccttgaaggtacaatttctcctcaattggg |
5094126 |
T |
|
| Q |
118 |
aaatctttctttccttgttgttcttgatttacaaggcaatagtttctatggtgagttaccacatgagttacttcagttgaagagattgaaatggttggat |
217 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||||| |||||||||| |||| || |
|
|
| T |
5094127 |
aaatctttctttccttattgttcttgatttacagggcaatagtttccatggtgagttaccacatgagttgcttcagttgaaaagattgaaattgttgaat |
5094226 |
T |
|
| Q |
218 |
ttgagcaacaatgattttgttggagaaattccttcaaggataggggacttagcaaaacttcatcatttggat |
289 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| || |||||| |
|
|
| T |
5094227 |
ttaagcaacaatgattttgttggagaaattccttcaaggataggggagttatcaaaacttcaacaattggat |
5094298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 161; Significance: 7e-86; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 18 - 249
Target Start/End: Complemental strand, 14427823 - 14427589
Alignment:
| Q |
18 |
gcaattgggttggtgttacttgtgatgaacatcatggaagagtaaatgcattgaatcttaataacatggaccttgaaggtacaatttctcctcaactggg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||| | || |
|
|
| T |
14427823 |
gcaattgggttggtgttacttgtgatgaacatcatggaagagtaaatgcattgaatcttagtaacatgggccttgaaggtaacatttctcctcaattagg |
14427724 |
T |
|
| Q |
118 |
aaatctttctttccttgttgttcttgatttacaaggcaatagtttctatggtgagttaccacatgagttacttcagttg---aagagattgaaatggttg |
214 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||| |||| ||| || ||||||||| |||| |
|
|
| T |
14427723 |
aaatctctctttccttgttgttcttgatctacatggcaatagtttccatggtgagttaccacatgagttatttcaattgcataatagattgaaaatgttg |
14427624 |
T |
|
| Q |
215 |
gatttgagcaacaatgattttgttggagaaattcc |
249 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
14427623 |
gatttgagcaacaatgattttgttggagaaattcc |
14427589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 90 - 250
Target Start/End: Original strand, 16873359 - 16873519
Alignment:
| Q |
90 |
ttgaaggtacaatttctcctcaactgggaaatctttctttccttgttgttcttgatttacaaggcaatagtttctatggtgagttaccacatgagttact |
189 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||| |||||||||||| ||||||| ||||||||||||||||| |||||||||| ||||| |||||||| |
|
|
| T |
16873359 |
ttgaaggtacaatttcctctcaattgggaaatctctctttccttgttattcttgacctacaaggcaatagtttccatggtgagtttccacaagagttact |
16873458 |
T |
|
| Q |
190 |
tcagttgaagagattgaaatggttggatttgagcaacaatgattttgttggagaaattcct |
250 |
Q |
| |
|
||| || ||||| |||| | || || |||||| |||||||||||||||||||||||||| |
|
|
| T |
16873459 |
tcatctgcagagactgaagagattagacttgagctacaatgattttgttggagaaattcct |
16873519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 20 - 98
Target Start/End: Original strand, 16872475 - 16872553
Alignment:
| Q |
20 |
aattgggttggtgttacttgtgatgaacatcatggaagagtaaatgcattgaatcttaataacatggaccttgaaggta |
98 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||| ||| |||| |||||||||| |
|
|
| T |
16872475 |
aattgggttggtgtcacttgtgatgagcatcatggaagagtaaaggcattgaatcttagtaatatgggacttgaaggta |
16872553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University