View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2761_low_25 (Length: 322)
Name: NF2761_low_25
Description: NF2761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2761_low_25 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 166 - 320
Target Start/End: Original strand, 142192 - 142346
Alignment:
| Q |
166 |
atctgtgttactataatgtaatatattgctaatgattatgtttaatttgattcctgtaggtnnnnnnnggaagagaaattcgtgttactatgagttctga |
265 |
Q |
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| T |
142192 |
atctgtgttactataatgtaatatattgctaatgattatgtttaatttgattcctataggtaaaaaaaggaagagaaattcgtgttactatgagttctga |
142291 |
T |
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| Q |
266 |
aactataccacaaattcagcacataatcaacattccagaaatcattgaacctatg |
320 |
Q |
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| T |
142292 |
aactataccacaaattcagcacataatcaacattccagaaatcattgaacctatg |
142346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 142050 - 142105
Alignment:
| Q |
24 |
aactgtgaaatcttgctagaaggtaatatatattgctagtgatttattttaatgta |
79 |
Q |
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| T |
142050 |
aactgtgaaatcttgctagaaggtaatatatattgctagtaatttattttaatgta |
142105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 272 - 320
Target Start/End: Original strand, 292471 - 292519
Alignment:
| Q |
272 |
accacaaattcagcacataatcaacattccagaaatcattgaacctatg |
320 |
Q |
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| T |
292471 |
accacagattcagcacataatcaacattccagagatcattgaacctatg |
292519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 279 - 320
Target Start/End: Complemental strand, 45961367 - 45961326
Alignment:
| Q |
279 |
attcagcacataatcaacattccagaaatcattgaacctatg |
320 |
Q |
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| T |
45961367 |
attcagcacataatcatcattccagaaagcattgaacctatg |
45961326 |
T |
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