View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2761_low_27 (Length: 295)
Name: NF2761_low_27
Description: NF2761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2761_low_27 |
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Alignment Details
Target: chr6 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 13 - 279
Target Start/End: Complemental strand, 33382914 - 33382649
Alignment:
| Q |
13 |
aatatgagaacatgtccagaattgcaccatggttactttacagtaaagcggaacatgaaaagtaaccatgtgttcgcaacaaggaaatgagtaatacgcn |
112 |
Q |
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| T |
33382914 |
aatatgagaacatgtccagaattgcaccatggttactttacagtaaagcggaacatgaaaagtaaccatgtgttcgcaacaaggaaatgagtaatacgct |
33382815 |
T |
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| Q |
113 |
nnnnnnncttaatttcatgaacaaatttattaacttttacaatgcgactcagaaatatcctatatagtcaactgcactcacgtcacagatatgagatgac |
212 |
Q |
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| T |
33382814 |
ttttttt-ttaatttcatgaacaaatttattaacttttacaatgcgactcagaaatatcctatatagtcaactgcactcacgtcacagatatgagatgac |
33382716 |
T |
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| Q |
213 |
ttcagcacttctagcattgaaatcccttaaggctgcacatttcacatgctgcaatcatataaaaatt |
279 |
Q |
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| T |
33382715 |
ttcagcacttctagcattgaaatcccttaaggctgcacatttcacatgctgcaatcatataaaaatt |
33382649 |
T |
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Target: chr1 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 173 - 278
Target Start/End: Original strand, 12579210 - 12579308
Alignment:
| Q |
173 |
tatatagtcaactgcactcacgtcacagatatgagatgacttcagcacttctagcattgaaatcccttaaggctgcacatttcacatgctgcaatcatat |
272 |
Q |
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|||||||| |||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |
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| T |
12579210 |
tatatagtaaactgcactcacctcacagata-------acttcagcacttctagcattgaaatccctcaaggctgcacgtttcacatgctgcaatcatat |
12579302 |
T |
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