View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2761_low_29 (Length: 268)
Name: NF2761_low_29
Description: NF2761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2761_low_29 |
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| [»] chr4 (2 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 11 - 268
Target Start/End: Complemental strand, 1681426 - 1681169
Alignment:
| Q |
11 |
aatactatgatggggggaatgcacagacagactaccctgttactgatcttctgcagatgatgggtcatgccagtcgtcctttggtggaccattctggaaa |
110 |
Q |
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| T |
1681426 |
aatactatgatggggagaatgcacagacagactaccctgttactgatcttctgcagatgatgggtcatgccagtcgtcctttggtggaccattctggaaa |
1681327 |
T |
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| Q |
111 |
gtgtgtcatcttatgccatgcaccttctaaggagtattacaaaaagtttttgttcgaagcattcccggttgaaagtcatcttcatcactttttacatgat |
210 |
Q |
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| T |
1681326 |
gtgtgtcatcttatgccatgcaccttctaaggagtattacaaaaagtttttgttcgaagcattcccggttgaaagtcatcttcatcactttttacatgat |
1681227 |
T |
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| Q |
211 |
aatttgaatgctgaaattgttgctggaattattgaaaacaagcaagacgctgtagatt |
268 |
Q |
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| T |
1681226 |
aatatgaatgctgaaattgttgctggaattattgaaaacaagcaagacgatgtagatt |
1681169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 13 - 268
Target Start/End: Original strand, 2799304 - 2799559
Alignment:
| Q |
13 |
tactatgatggggggaatgcacagacagactaccctgttactgatcttctgcagatgatgggtcatgccagtcgtcctttggtggaccattctggaaagt |
112 |
Q |
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| T |
2799304 |
tactatgatggggagaatgcacagacagactaccctgttactgatcttctgcagatgatgggtcatgccagtcgtcctttggtggaccattctggaaagt |
2799403 |
T |
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| Q |
113 |
gtgtcatcttatgccatgcaccttctaaggagtattacaaaaagtttttgttcgaagcattcccggttgaaagtcatcttcatcactttttacatgataa |
212 |
Q |
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| T |
2799404 |
gtgtcatcttatgccatgcaccttctaaggagtattacaaaaagtttttgttcgaagcattcccggttgaaagtcatcttcatcactttttacatgataa |
2799503 |
T |
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| Q |
213 |
tttgaatgctgaaattgttgctggaattattgaaaacaagcaagacgctgtagatt |
268 |
Q |
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| T |
2799504 |
tttgaatgctgaaattgttgctggaattattgaaaacaagcaagacgttgttgatt |
2799559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 27 - 268
Target Start/End: Original strand, 29268494 - 29268735
Alignment:
| Q |
27 |
gaatgcacagacagactaccctgttactgatcttctgcagatgatgggtcatgccagtcgtcctttggtggaccattctggaaagtgtgtcatcttatgc |
126 |
Q |
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| T |
29268494 |
gaatgcccagacagattaccctgttactgatttgctgcaaatgatgggtcatgccagccgtcctttagtagacaattctggaaaatgtgtcatcttatgc |
29268593 |
T |
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| Q |
127 |
catgcaccttctaaggagtattacaaaaagtttttgttcgaagcattcccggttgaaagtcatcttcatcactttttacatgataatttgaatgctgaaa |
226 |
Q |
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| T |
29268594 |
cacgcacctcgcaaagagtactacaagaagtttctgtatgaagcattcccagttgaaagccatcttcatcacttcttgcacgacaacttgaatgctgaaa |
29268693 |
T |
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| Q |
227 |
ttgttgctggaattattgaaaacaagcaagacgctgtagatt |
268 |
Q |
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| T |
29268694 |
ttgttgctgggattattgaaaacaagcaagatgctgttgatt |
29268735 |
T |
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