View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2761_low_37 (Length: 250)
Name: NF2761_low_37
Description: NF2761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2761_low_37 |
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| [»] scaffold0010 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 30 - 239
Target Start/End: Complemental strand, 21486036 - 21485824
Alignment:
| Q |
30 |
actgacttccaagaaaccctttttaggaaaatatttggctttcagaatgcgagtgagtagggagttgggatcatttaagagtttttaacattgcttacca |
129 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21486036 |
actggcttccaagaaaccctttttaggaaaatatttggctttcagaatgcgagtgagtagggagttgggatcatttaagagtttttaacattgcttacca |
21485937 |
T |
|
| Q |
130 |
agcatagagagcttaaaggcttcgatattgcgaaaacctagtccaccttgatttttatgacgagataatt---ttttctatctcatccaattgatcccgc |
226 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |
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| T |
21485936 |
agcatagagagcttaaaggcttcgatattgcgaaaacctagtccaccttgatttttatgatgagataatttttttttctatctcatccaattgatcccgc |
21485837 |
T |
|
| Q |
227 |
actttctgttctt |
239 |
Q |
| |
|
||||||||||||| |
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|
| T |
21485836 |
actttctgttctt |
21485824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 58 - 218
Target Start/End: Complemental strand, 29291645 - 29291485
Alignment:
| Q |
58 |
aaatatttggctttcagaatgcgagtgagtagggagttgggatcatttaagagtttttaacattgcttaccaagcatagagagcttaaaggcttcgatat |
157 |
Q |
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|||||||||||||| |||||||||||||||| |||| | || || | | |||||| ||| ||||||||| ||||| || || ||||||||||| |||| |
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| T |
29291645 |
aaatatttggctttgagaatgcgagtgagtaaggagctaggttctgtaaggagtttccaaccttgcttaccgagcatggatagattaaaggcttccatat |
29291546 |
T |
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| Q |
158 |
tgcgaaaacctagtccaccttgatttttatgacgagataattttttctatctcatccaatt |
218 |
Q |
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| ||| || |||||||| ||| |||| ||| |||||| ||| ||| ||||||||||||| |
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| T |
29291545 |
ccctaaatccgagtccaccatgacttttgtgaagagatagtttgttccatctcatccaatt |
29291485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 157
Target Start/End: Original strand, 17640510 - 17640654
Alignment:
| Q |
13 |
cttggattatgaccaatactgacttccaagaaaccctttttaggaaaatatttggctttcagaatgcgagtgagtagggagttgggatcatttaagagtt |
112 |
Q |
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||||||||||| ||||||| | |||||||||||||||| || ||||||||||||| || |||||||| || |||| | |||| ||||||| || ||||| |
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| T |
17640510 |
cttggattatgtccaataccggcttccaagaaacccttcctaagaaaatatttggcattgagaatgcgtgtaagtaagaagttaggatcatgtatgagtt |
17640609 |
T |
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| Q |
113 |
tttaacattgcttaccaagcatagagagcttaaaggcttcgatat |
157 |
Q |
| |
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| ||| ||| || |||||||||||||| ||||| ||||| |||| |
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| T |
17640610 |
tccaaccttgtttgccaagcatagagagattaaatgcttccatat |
17640654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 58 - 218
Target Start/End: Complemental strand, 35612344 - 35612184
Alignment:
| Q |
58 |
aaatatttggctttcagaatgcgagtgagtagggagttgggatcatttaagagtttttaacattgcttaccaagcatagagagcttaaaggcttcgatat |
157 |
Q |
| |
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|||||||||||||| |||||||||||||||| |||| | || || | | |||||| ||| ||||||||| ||||| || || ||||||||||| |||| |
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| T |
35612344 |
aaatatttggctttgagaatgcgagtgagtaaggagctaggttctgtaaggagtttccaaccttgcttaccgagcatggatagattaaaggcttccatat |
35612245 |
T |
|
| Q |
158 |
tgcgaaaacctagtccaccttgatttttatgacgagataattttttctatctcatccaatt |
218 |
Q |
| |
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| ||| || |||||||| ||| |||| ||| |||||| ||| ||| ||||||||||||| |
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| T |
35612244 |
ccctaaatccgagtccaccatgacttttgtgaagagatagtttgttccatctcatccaatt |
35612184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 58 - 218
Target Start/End: Complemental strand, 24466033 - 24465873
Alignment:
| Q |
58 |
aaatatttggctttcagaatgcgagtgagtagggagttgggatcatttaagagtttttaacattgcttaccaagcatagagagcttaaaggcttcgatat |
157 |
Q |
| |
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|||||||||||||| |||||||||||||||| |||| | || || | | |||||| ||| ||||||||| ||||| || || ||||||||||| |||| |
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| T |
24466033 |
aaatatttggctttgagaatgcgagtgagtaaggagctaggttctgtaaggagtttccaaccttgcttaccgagcatggatagattaaaggcttccatat |
24465934 |
T |
|
| Q |
158 |
tgcgaaaacctagtccaccttgatttttatgacgagataattttttctatctcatccaatt |
218 |
Q |
| |
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| ||| || |||||||| ||| |||| ||| |||||||||| ||| ||||||||||||| |
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|
| T |
24465933 |
ccctaaatccgagtccaccatgacttttgtgaagagataatttgttccatctcatccaatt |
24465873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 58 - 218
Target Start/End: Original strand, 4018462 - 4018622
Alignment:
| Q |
58 |
aaatatttggctttcagaatgcgagtgagtagggagttgggatcatttaagagtttttaacattgcttaccaagcatagagagcttaaaggcttcgatat |
157 |
Q |
| |
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|||||||||||||| |||||||||||||||| |||| | || || | | |||||| ||| ||||||||| ||||| || || ||||||||||| |||| |
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| T |
4018462 |
aaatatttggctttgagaatgcgagtgagtaaggagctaggttctgtaaggagtttccaaccttgcttaccgagcatggatagattaaaggcttccatat |
4018561 |
T |
|
| Q |
158 |
tgcgaaaacctagtccaccttgatttttatgacgagataattttttctatctcatccaatt |
218 |
Q |
| |
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| ||| || |||||||| ||| |||| ||| |||||| ||| ||| ||||||||||||| |
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| T |
4018562 |
ccctaaatccgagtccaccatgacttttgtgaagagatagtttgttccatctcatccaatt |
4018622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 67
Target Start/End: Complemental strand, 26659428 - 26659366
Alignment:
| Q |
5 |
atgtaaagcttggattatgaccaatactgacttccaagaaaccctttttaggaaaatatttgg |
67 |
Q |
| |
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||||||| |||||||||||||||||| | |||| ||||||||||||||||| |||||||||| |
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| T |
26659428 |
atgtaaaacttggattatgaccaatatcggcttcgaagaaaccctttttagggaaatatttgg |
26659366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 218
Target Start/End: Original strand, 8072381 - 8072541
Alignment:
| Q |
58 |
aaatatttggctttcagaatgcgagtgagtagggagttgggatcatttaagagtttttaacattgcttaccaagcatagagagcttaaaggcttcgatat |
157 |
Q |
| |
|
|||||||| ||||| |||||||||||||||| |||| |||| || | | |||||| ||| ||| ||||| ||||| || || ||||||||||| |||| |
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|
| T |
8072381 |
aaatatttagctttgagaatgcgagtgagtaaggagctgggctctgtgaggagtttccaaccttgtttaccgagcatggaaagattaaaggcttccatat |
8072480 |
T |
|
| Q |
158 |
tgcgaaaacctagtccaccttgatttttatgacgagataattttttctatctcatccaatt |
218 |
Q |
| |
|
||||| || || ||||| || ||||||| |||||||| | | ||||||||||||| |
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|
| T |
8072481 |
cacgaaatccgagaccaccacgagttttatgcaatgataatttatcccatctcatccaatt |
8072541 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 58 - 176
Target Start/End: Original strand, 238032 - 238150
Alignment:
| Q |
58 |
aaatatttggctttcagaatgcgagtgagtagggagttgggatcatttaagagtttttaacattgcttaccaagcatagagagcttaaaggcttcgatat |
157 |
Q |
| |
|
|||||||| ||||| ||||| |||||||||| |||| | |||||| ||| |||||| ||| ||| | ||||||||||||||| || || ||||| || | |
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| T |
238032 |
aaatatttagctttgagaattcgagtgagtaaggagctaggatcagttaggagtttccaaccttgttaaccaagcatagagaggttgaatgcttccatgt |
238131 |
T |
|
| Q |
158 |
tgcgaaaacctagtccacc |
176 |
Q |
| |
|
| |||||||| || ||||| |
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|
| T |
238132 |
tacgaaaaccaagaccacc |
238150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 135
Target Start/End: Complemental strand, 25898218 - 25898088
Alignment:
| Q |
5 |
atgtaaagcttggattatgaccaatactgacttccaagaaaccctttttaggaaaatatttggctttcagaatgcgagtgagtagggagttgggatcatt |
104 |
Q |
| |
|
||||||||||||||| ||||||||| | | ||||||||| || ||||||| || ||||||||||| ||||| ||||| |||| |||| | | |||||| |
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|
| T |
25898218 |
atgtaaagcttggatcgtgaccaatagttgcatccaagaaatcccttttagggaagtatttggctttgagaatacgagtaagtaaggagctagaatcatt |
25898119 |
T |
|
| Q |
105 |
taagagtttttaacattgcttaccaagcata |
135 |
Q |
| |
|
| |||||| ||| ||| ||||| |||||| |
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|
| T |
25898118 |
gaggagtttccaaccttgtttaccgagcata |
25898088 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 167
Target Start/End: Complemental strand, 30839729 - 30839619
Alignment:
| Q |
57 |
aaaatatttggctttcagaatgcgagtgagtagggagttgggatcatttaagagtttttaacattgcttaccaagcatagagagcttaaaggcttcgata |
156 |
Q |
| |
|
||||||||| ||||| ||||| ||||||||| |||| | ||||| || | |||||| ||| ||| ||||||||||||||||| || || ||||| || |
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|
| T |
30839729 |
aaaatattttgctttgagaatatgagtgagtaaggagctaggatctttgaggagtttccaaccttgtttaccaagcatagagagattgaaagcttccatg |
30839630 |
T |
|
| Q |
157 |
ttgcgaaaacc |
167 |
Q |
| |
|
|| |||||||| |
|
|
| T |
30839629 |
tttcgaaaacc |
30839619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 218
Target Start/End: Complemental strand, 21951198 - 21951038
Alignment:
| Q |
58 |
aaatatttggctttcagaatgcgagtgagtagggagttgggatcatttaagagtttttaacattgcttaccaagcatagagagcttaaaggcttcgatat |
157 |
Q |
| |
|
|||||||| ||||| |||||||||||||||| |||| |||| || | | |||||| ||| ||| ||||| ||||| || || ||||||||||| |||| |
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|
| T |
21951198 |
aaatatttagctttgagaatgcgagtgagtaaggagctgggctctgtgaggagtttccaaccttgtttaccgagcatggaaagattaaaggcttccatat |
21951099 |
T |
|
| Q |
158 |
tgcgaaaacctagtccaccttgatttttatgacgagataattttttctatctcatccaatt |
218 |
Q |
| |
|
||||| || || ||||| || ||||||| |||||||| | | ||||||||||||| |
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|
| T |
21951098 |
cacgaaatccgagaccaccacgagttttatgcaatgataatttatcccatctcatccaatt |
21951038 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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