View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2761_low_38 (Length: 246)
Name: NF2761_low_38
Description: NF2761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2761_low_38 |
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Alignment Details
Target: chr5 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 18 - 235
Target Start/End: Complemental strand, 36076019 - 36075815
Alignment:
| Q |
18 |
attgtttcggtggaaaacggagttggtggagttttgtaagtgagcgattcaaactacaaagtgagaggtgcatattttaggttgattgaagaagaaaatg |
117 |
Q |
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| T |
36076019 |
attgtttcggtggaaaacggagttggtggagttttgtaagtgagcgattcaaactacaaagtgagaggtgcatattttaggttgattgaagaagaaaatg |
36075920 |
T |
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| Q |
118 |
aggaagtggagtggcataaaagaggtttggaatcctttgatccctttgagaggttaatttaagtgcttcgttattgtgttatggttgtggtaaactcgaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
36075919 |
aggaagtggagtggcataaaagaggtttggaatcctttgatccctttgagaggttaatttaa-------------gtgttatggttgtggtaaactcgaa |
36075833 |
T |
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| Q |
218 |
actattaatcacatcttt |
235 |
Q |
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|||||||||||||||||| |
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| T |
36075832 |
actattaatcacatcttt |
36075815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 166
Target Start/End: Original strand, 4217331 - 4217361
Alignment:
| Q |
136 |
aaagaggtttggaatcctttgatccctttga |
166 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
4217331 |
aaagaggtttggaatcctttgatccctttga |
4217361 |
T |
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