View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2761_low_40 (Length: 244)
Name: NF2761_low_40
Description: NF2761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2761_low_40 |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 12 - 220
Target Start/End: Complemental strand, 11598739 - 11598531
Alignment:
| Q |
12 |
atcatcaagctaactacagaagtacaagaacaaaaggggggatacatttgccctaataagcctaaatattgagaagttggcaccaaatttgaaaataatt |
111 |
Q |
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| T |
11598739 |
atcaacaagctaactacagaagtacaagaacaaaaggggggctacgtttgccctaataagcctaaatattgagaagttggcaccaaatttgaaaataatt |
11598640 |
T |
|
| Q |
112 |
gaaacaatcttcacacaaatgaggtgcatcatacgttcatttgaaatgacatggacggaagtgtaggaaaatggctataaatataaattaagatatagtt |
211 |
Q |
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| T |
11598639 |
gaaacaatcttcacacaaatgaggtgcatcatatgttcatttgaaatgacatggacggaagtgtaggaaaatggcaataaatataaattaagatatagtt |
11598540 |
T |
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| Q |
212 |
tataacatt |
220 |
Q |
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||||||||| |
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| T |
11598539 |
tataacatt |
11598531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 2 - 220
Target Start/End: Complemental strand, 11586160 - 11585939
Alignment:
| Q |
2 |
tgagatggacatcatcaagctaactacagaagtacaagaacaaaaggggggatacatttgccctaataagcctaaatattgagaagttggcaccaaattt |
101 |
Q |
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||||||| | |||| ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11586160 |
tgagatgtaaatcaacaagctaactacagaagtacaagaacaaaagggaggctacatttgccctaataagcctaaatattgagaagttggcaccaaattt |
11586061 |
T |
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| Q |
102 |
gaaaataattgaaacaatcttcacacaaatgaggtgcatcatacgttc---atttgaaatgacatggacggaagtgtaggaaaatggctataaatataaa |
198 |
Q |
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| T |
11586060 |
gaaaataattgaaacaatcttcacacaaatgaggtgcatcatatgttcattatttgaaatgacatggacggaagtgtaggaaaatggctataaatataaa |
11585961 |
T |
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| Q |
199 |
ttaagatatagtttataacatt |
220 |
Q |
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| T |
11585960 |
ttaagatatagtttataacatt |
11585939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 116
Target Start/End: Complemental strand, 11609218 - 11609182
Alignment:
| Q |
80 |
ttgagaagttggcaccaaatttgaaaataattgaaac |
116 |
Q |
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| T |
11609218 |
ttgagaagttggcatcaaatttgaaaataattgaaac |
11609182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 160
Target Start/End: Complemental strand, 11609146 - 11609109
Alignment:
| Q |
123 |
cacacaaatgaggtgcatcatacgttcatttgaaatga |
160 |
Q |
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| T |
11609146 |
cacacaaatgaggtgcatcatatcttcatttgaaatga |
11609109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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