View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2761_low_41 (Length: 241)
Name: NF2761_low_41
Description: NF2761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2761_low_41 |
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Alignment Details
Target: chr6 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 33382323 - 33382099
Alignment:
| Q |
1 |
aaaccaattcgacacatagagaacattcaaacaccttacacaaataagaataatgactcgtgaataatagcgtaaaagaaacaaggaccgtcaacaggta |
100 |
Q |
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| T |
33382323 |
aaaccaattcgacacatagagaacattcaaacaccttacacaaataagaataataactcgtgaataatagcgtaaaagaaacaaggaccgtcaacaggta |
33382224 |
T |
|
| Q |
101 |
tcttatgacatggaatcaatgtccttataaacttgttacaatgtgaagatatcatactattaaaggaatgatgttagattgaaacttgaaaatacttccc |
200 |
Q |
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| T |
33382223 |
tcttatgacatggaatcaatgtccttataaacttgttacaatgtgaagatatcatactattaaaggaatgatgttagattgaaacttgaaaatacttccc |
33382124 |
T |
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| Q |
201 |
catctcgagtccatgatattagatt |
225 |
Q |
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| T |
33382123 |
catctcgagtccatgatattagatt |
33382099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 124 - 218
Target Start/End: Complemental strand, 33276693 - 33276599
Alignment:
| Q |
124 |
cttataaacttgttacaatgtgaagatatcatactattaaaggaatgatgttagattgaaacttgaaaatacttccccatctcgagtccatgata |
218 |
Q |
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| T |
33276693 |
cttattaacttgttacaatgtgaagatatcgtactattgaaagacaaaaatgatgttgaaactttaaaatacttccccatctcaagtccatgata |
33276599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 161
Target Start/End: Complemental strand, 33266959 - 33266922
Alignment:
| Q |
124 |
cttataaacttgttacaatgtgaagatatcatactatt |
161 |
Q |
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||||| |||||||||||||||||||||||| ||||||| |
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| T |
33266959 |
cttattaacttgttacaatgtgaagatatcgtactatt |
33266922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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