View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2761_low_42 (Length: 236)

Name: NF2761_low_42
Description: NF2761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2761_low_42
NF2761_low_42
[»] chr4 (13 HSPs)
chr4 (13-236)||(49106387-49106610)
chr4 (45-236)||(49108523-49108714)
chr4 (62-234)||(21503706-21503877)
chr4 (60-236)||(11652298-11652473)
chr4 (61-236)||(3461049-3461223)
chr4 (46-236)||(26984561-26984748)
chr4 (54-236)||(50077109-50077280)
chr4 (87-236)||(26998673-26998821)
chr4 (150-236)||(48205857-48205943)
chr4 (153-226)||(35806165-35806238)
chr4 (156-235)||(51578274-51578352)
chr4 (155-198)||(54677590-54677633)
chr4 (157-236)||(41013548-41013627)
[»] chr5 (9 HSPs)
chr5 (54-236)||(7524994-7525176)
chr5 (50-236)||(3643666-3643850)
chr5 (69-236)||(1716370-1716533)
chr5 (65-236)||(4103271-4103440)
chr5 (83-236)||(16037884-16038036)
chr5 (149-229)||(5350672-5350752)
chr5 (83-180)||(33968558-33968654)
chr5 (191-236)||(19261152-19261197)
chr5 (145-209)||(13636365-13636429)
[»] chr6 (8 HSPs)
chr6 (54-236)||(10791551-10791733)
chr6 (54-236)||(10795789-10795971)
chr6 (80-219)||(11333273-11333413)
chr6 (65-236)||(8875715-8875887)
chr6 (64-209)||(13136607-13136752)
chr6 (145-236)||(30521268-30521359)
chr6 (156-236)||(21216051-21216131)
chr6 (62-135)||(10509478-10509551)
[»] chr1 (21 HSPs)
chr1 (50-236)||(38175425-38175611)
chr1 (51-236)||(14652551-14652736)
chr1 (51-236)||(14662342-14662527)
chr1 (54-236)||(14708604-14708786)
chr1 (120-236)||(14681625-14681741)
chr1 (61-236)||(14679885-14680060)
chr1 (120-236)||(14674507-14674623)
chr1 (61-236)||(14683776-14683951)
chr1 (54-236)||(14654239-14654421)
chr1 (54-236)||(14664030-14664212)
chr1 (54-236)||(14716317-14716499)
chr1 (60-236)||(28366104-28366280)
chr1 (121-236)||(14669675-14669790)
chr1 (121-236)||(14706114-14706229)
chr1 (51-236)||(33988096-33988280)
chr1 (155-236)||(11872481-11872562)
chr1 (143-236)||(14667099-14667192)
chr1 (167-236)||(14676658-14676727)
chr1 (177-236)||(37422195-37422254)
chr1 (144-214)||(7448416-7448486)
chr1 (131-209)||(14703133-14703211)
[»] chr2 (25 HSPs)
chr2 (51-236)||(30734014-30734199)
chr2 (53-236)||(32918106-32918289)
chr2 (52-236)||(43850075-43850259)
chr2 (146-236)||(2841008-2841098)
chr2 (62-236)||(19232307-19232480)
chr2 (54-236)||(30732034-30732216)
chr2 (51-236)||(8973338-8973523)
chr2 (50-236)||(9008047-9008233)
chr2 (51-236)||(9026812-9026997)
chr2 (51-236)||(9020873-9021058)
chr2 (83-234)||(17225591-17225743)
chr2 (124-231)||(6471679-6471785)
chr2 (145-236)||(9030424-9030515)
chr2 (82-213)||(8912983-8913116)
chr2 (145-231)||(17275862-17275948)
chr2 (155-236)||(10763878-10763959)
chr2 (189-236)||(9032079-9032126)
chr2 (145-236)||(9016519-9016614)
chr2 (149-236)||(8992174-8992262)
chr2 (146-236)||(35701915-35702005)
chr2 (145-236)||(8988481-8988573)
chr2 (181-236)||(9023473-9023528)
chr2 (195-236)||(8979348-8979389)
chr2 (195-236)||(8984719-8984760)
chr2 (150-186)||(31659782-31659818)
[»] chr8 (14 HSPs)
chr8 (50-236)||(40054338-40054524)
chr8 (50-236)||(44879009-44879194)
chr8 (50-236)||(44880727-44880912)
chr8 (54-236)||(10944298-10944480)
chr8 (54-236)||(41841052-41841233)
chr8 (138-236)||(44582879-44582977)
chr8 (163-236)||(37682083-37682156)
chr8 (145-236)||(37679781-37679872)
chr8 (126-236)||(42555053-42555164)
chr8 (82-202)||(42554589-42554709)
chr8 (85-202)||(11177945-11178062)
chr8 (188-231)||(42092051-42092094)
chr8 (189-236)||(42220880-42220926)
chr8 (156-209)||(44583110-44583162)
[»] chr7 (3 HSPs)
chr7 (79-236)||(27134537-27134694)
chr7 (145-236)||(8128169-8128259)
chr7 (63-132)||(22079645-22079714)
[»] scaffold0549 (1 HSPs)
scaffold0549 (145-211)||(5447-5513)


Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 13 - 236
Target Start/End: Original strand, 49106387 - 49106610
Alignment:
Q  13 aatattgaagtgacctctccccccaaatactagaaacattgaactagaattggtggggtgcgcctagctcatgcaatagtgcaacgcatgagcgacacat 112  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  49106387 aatattgaagtgacctctccccccaaaaactagaaacattgaactagaattggtggggtgcgcctagctcatgcaatagtgcaacacatgagcgacacat 49106486  T
Q  113 gagaaatctagtagcaagctactaagatgacttctccccctcaaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgat 212  Q
     ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49106487 aagaaatccagtagcaagctactaaggtgacttctccccctcaaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgat 49106586  T
Q  213 aagaacagatactacacttgatct 236  Q
    ||||||||||||||||||||||||    
T  49106587 aagaacagatactacacttgatct 49106610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 45 - 236
Target Start/End: Original strand, 49108523 - 49108714
Alignment:
Q  45 gaaacattgaactagaattggtggggtgcgcctagctcatgcaatagtgcaacgcatgagcgacacatgagaaatctagtagcaagctactaagatgact 144  Q
    |||| ||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| || | ||||||||||||  |||||||    
T  49108523 gaaaaattaaactaggattggtggggtgcgcctagctcatgcaatagtgcaacacatgagcgacacataagaagtccaatagcaagctactgtgatgact 49108622  T
Q  145 tctccccctcaaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatct 236  Q
    ||||||||||||||||||||||||||||||||||| ||||||   |||||||||||||||||||||||||||||||||||||||||||||||    
T  49108623 tctccccctcaaaaaagtaatttaatatcgtgtgacccattgagtcacatatcagatattaaactgataagaacagatactacacttgatct 49108714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 62 - 234
Target Start/End: Complemental strand, 21503877 - 21503706
Alignment:
Q  62 ttggtggggtgcgcctagctcatgcaatagtgcaacgcatgagcgacacatgagaaatctagtagcaagctactaagatgacttctccccctcaaaaaag 161  Q
    ||||||||||||||| |||  ||||||||||||||||||| |||||||| |||||| |  | |||||||||| |  |||||||||||||||||||||||     
T  21503877 ttggtggggtgcgcc-agcctatgcaatagtgcaacgcataagcgacacttgagaagttcaatagcaagctattgtgatgacttctccccctcaaaaaaa 21503779  T
Q  162 taatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgat 234  Q
    |||||||||||||||||| | ||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  21503778 taatttaatatcgtgtgacctattgagccacatatcagatattaaactgataagaacagatactacacttgat 21503706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 60 - 236
Target Start/End: Original strand, 11652298 - 11652473
Alignment:
Q  60 aattggtggggtgcgcctagctcatgcaatagtgcaacgcatgagcgacacatgagaaatctagtagcaagctactaagatgacttctccccctcaaaaa 159  Q
    ||||||||||||||||| ||| |||||||||||||||| |||  |||||||   ||||  | | |||||||||| |    || |||||||||||||||||    
T  11652298 aattggtggggtgcgcc-agcccatgcaatagtgcaacacataggcgacactcaagaagcccaatagcaagctattggagtggcttctccccctcaaaaa 11652396  T
Q  160 agtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatct 236  Q
    | |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  11652397 aataatttaatatcgtgtgacccattgggccacatatcagatattaaactgataagaacagatactacacttgatct 11652473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 61 - 236
Target Start/End: Original strand, 3461049 - 3461223
Alignment:
Q  61 attggtggggtgcgcctagctcatgcaatagtgcaacgcatgagcgacacatgagaaatctagtagcaagctactaagatgacttctccccctcaaaaaa 160  Q
    |||||||||||| ||| |||  |||||||||||||||||||   ||||||  |||||| | | |||||||||| | | ||| ||||||||||| ||||||    
T  3461049 attggtggggtgtgcc-agcctatgcaatagtgcaacgcatagacgacactcgagaaacccaatagcaagctattgaaatggcttctcccccttaaaaaa 3461147  T
Q  161 gtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatct 236  Q
    ||||||||||||||||||| ||||||   |||||||||||||||||||||||||||||||||||||||||||||||    
T  3461148 gtaatttaatatcgtgtgacccattgagtcacatatcagatattaaactgataagaacagatactacacttgatct 3461223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 46 - 236
Target Start/End: Original strand, 26984561 - 26984748
Alignment:
Q  46 aaacattgaactagaattggtggggtgcgcctagctcatgcaatagtgcaacgcatgagcgacacatgagaaatctagtagcaagctactaagatgactt 145  Q
    |||||||||||| ||||||||||| |||||| ||| |||||||||||||||||||   ||||||| |||||   | || |||||||||||| |  ||||     
T  26984561 aaacattgaact-gaattggtgggatgcgcc-agcccatgcaatagtgcaacgcaaaggcgacacttgagagcccaagcagcaagctactaggcagact- 26984657  T
Q  146 ctccccctcaaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatct 236  Q
    ||| ||||  |||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  26984658 ctctccctttaaaaagtaatttaatatcgtgtggaccattggtccacatatcagatattaaactgataagaacagatactacacttgatct 26984748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 54 - 236
Target Start/End: Original strand, 50077109 - 50077280
Alignment:
Q  54 aactagaattggtggggtgcgcctagctcatgcaatagtgcaacgcatgagcgacacatgagaaatctagtagcaagctactaagatgacttctccccct 153  Q
    |||||||||||||||||||  |||| ||||||||||||||||||           |||||||||  | | |||||||||| | |  || |||||||||||    
T  50077109 aactagaattggtggggtgtacctaactcatgcaatagtgcaac-----------acatgagaagcccaatagcaagctattgaagtggcttctccccct 50077197  T
Q  154 caaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatct 236  Q
    |||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  50077198 caaaaaagtaatttaatatcatgtgaaccattggaacacatatcagatattaaactgataagaacagatactacacttgatct 50077280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 87 - 236
Target Start/End: Original strand, 26998673 - 26998821
Alignment:
Q  87 aatagtgcaacgcatgagcgacacatgagaaatctagtagcaagctactaagatgacttctccccctcaaaaaagtaatttaatatcgtgtgatccattg 186  Q
    ||||||||||||||   ||||||| |||||   | || |||||||||||| |  |||| ||| |||| ||||||||||||||||||||||||  ||||||    
T  26998673 aatagtgcaacgcaaaggcgacacttgagagcccaagcagcaagctactaggcagact-ctctccctaaaaaaagtaatttaatatcgtgtggaccattg 26998771  T
Q  187 gaccacatatcagatattaaactgataagaacagatactacacttgatct 236  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  26998772 gtccacatatcagatattaaactgataagaacagatactacacttgatct 26998821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 150 - 236
Target Start/End: Complemental strand, 48205943 - 48205857
Alignment:
Q  150 ccctcaaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatct 236  Q
    |||||||||||||||||||||||| ||| | ||| ||| |||||||| |||||||||| | ||||||||||||||||||||| ||||    
T  48205943 ccctcaaaaaagtaatttaatatcatgtaaaccaatggtccacatataagatattaaattaataagaacagatactacacttaatct 48205857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 153 - 226
Target Start/End: Complemental strand, 35806238 - 35806165
Alignment:
Q  153 tcaaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatacta 226  Q
    |||||||||||||||||||||||| ||  |||| ||  |||||||| |||||||||||||||||||| ||||||    
T  35806238 tcaaaaaagtaatttaatatcgtgcgactcattagattacatatcatatattaaactgataagaacaaatacta 35806165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 156 - 235
Target Start/End: Complemental strand, 51578352 - 51578274
Alignment:
Q  156 aaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatc 235  Q
    |||||||||||||||||||||||||| |||| |||| |||| ||||| | |||| ||||||||| ||| |||||||||||    
T  51578352 aaaaagtaatttaatatcgtgtgatctattgaaccatatattagata-tgaactaataagaacatatattacacttgatc 51578274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 155 - 198
Target Start/End: Complemental strand, 54677633 - 54677590
Alignment:
Q  155 aaaaaagtaatttaatatcgtgtgatccattggaccacatatca 198  Q
    ||||||||||||||||||||||||||||||| ||||||||||||    
T  54677633 aaaaaagtaatttaatatcgtgtgatccattagaccacatatca 54677590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 236
Target Start/End: Original strand, 41013548 - 41013627
Alignment:
Q  157 aaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatct 236  Q
    |||| |||||||||| | ||||| || |||| |||||||||||||||||||| |||||||||| ||| || |||| ||||    
T  41013548 aaaaataatttaataccatgtgaacccttggtccacatatcagatattaaacggataagaacatatattatacttaatct 41013627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 135; Significance: 2e-70; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 54 - 236
Target Start/End: Complemental strand, 7525176 - 7524994
Alignment:
Q  54 aactagaattggtggggtgcgcctagctcatgcaatagtgcaacgcatgagcgacacatgagaaatctagtagcaagctactaagatgacttctccccct 153  Q
    ||||| ||||||||||||||||||||| |||||||||||||||||||||  |||||||||||||| | || ||||||||||||||  | | |||||||||    
T  7525176 aactaaaattggtggggtgcgcctagcccatgcaatagtgcaacgcatggacgacacatgagaaacccagcagcaagctactaaggcggcctctccccct 7525077  T
Q  154 caaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatct 236  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  7525076 caaaaaagtaatttaatatcgtgtgatccattggatcacatatcagatattaaactgataagaacagatactacacttgatct 7524994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 50 - 236
Target Start/End: Complemental strand, 3643850 - 3643666
Alignment:
Q  50 attgaactagaattggtggggtgcgcctagctcatgcaatagtgcaacgcatgagcgacacatgagaaatctagtagcaagctactaagatgacttctcc 149  Q
    |||||||| |||||||||||||||||| |||  ||||||||||||||| ||| ||| ||||  |||||| | | |||||||||| |  |||   ||||||    
T  3643850 attgaact-gaattggtggggtgcgcc-agccaatgcaatagtgcaacacataagcaacactcgagaaacccaatagcaagctattgtgatagtttctcc 3643753  T
Q  150 ccctcaaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatct 236  Q
    |||| ||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  3643752 cccttaaaaaagtaatttaatatcgtgtgacccaatgggccacatatcagatattaaactgataagaacagatactacacttgatct 3643666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 69 - 236
Target Start/End: Original strand, 1716370 - 1716533
Alignment:
Q  69 ggtgcgcctagctcatgcaatagtgcaacgcatgagcgacacatgagaaatctagtagcaagctactaagatgacttctccccctcaaaaaagtaattta 168  Q
    |||||||| |||||||||||  ||||||| ||| ||| ||||   ||||||| ||||||||||||||    |||||||||||||| ||||||||||||||    
T  1716370 ggtgcgcc-agctcatgcaa--gtgcaacacataagcaacactcaagaaatcaagtagcaagctactcg--tgacttctcccccttaaaaaagtaattta 1716464  T
Q  169 atatcgtgtgatccatt-ggaccacatatcagatattaaactgataagaacagatactacacttgatct 236  Q
    ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1716465 atatcgtgtgacccatttggaccacatatcagatattaaactgataagaacagatactacacttgatct 1716533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 65 - 236
Target Start/End: Complemental strand, 4103440 - 4103271
Alignment:
Q  65 gtggggtgcgcctagctcatgcaatagtgcaacgcatgagcgacacatgagaaatctagtagcaagctactaagatgacttctccccctcaaaaaagtaa 164  Q
    ||||| |||||| ||| ||| |||||||||||||||   ||||||  ||||||  | |||||||| |||||| |  |||| ||| |||| ||||||| ||    
T  4103440 gtgggatgcgcc-agcccatacaatagtgcaacgcaaaggcgacatttgagaacccaagtagcaaactactaggcggact-ctctccctaaaaaaagcaa 4103343  T
Q  165 tttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatct 236  Q
    ||||||||||||||  | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  4103342 tttaatatcgtgtggactattgggccacatatcagatattaaactgataagaacagatactacacttgatct 4103271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 83 - 236
Target Start/End: Complemental strand, 16038036 - 16037884
Alignment:
Q  83 atgcaatagtgcaacgcatgagcgacacatgagaaatctagtagcaagctactaagatgacttctccccctcaaaaaagtaatttaatatcgtgtgatcc 182  Q
    ||||||||||||||| ||| ||||||||| |||||  | | |||||||||  |  |||||||| | ||| ||||||||||||||||||||||| ||| ||    
T  16038036 atgcaatagtgcaacacataagcgacacacgagaagcccattagcaagctcttgtgatgactttttcccttcaaaaaagtaatttaatatcgtttgaccc 16037937  T
Q  183 attggaccacatatcagatattaaactgataagaacagatactacacttgatct 236  Q
    ||| |||||| ||||| |||||||  | ||||||||| ||||||||||||||||    
T  16037936 attagaccac-tatcaaatattaagataataagaacaaatactacacttgatct 16037884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 149 - 229
Target Start/End: Complemental strand, 5350752 - 5350672
Alignment:
Q  149 cccctcaaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacac 229  Q
    |||||||| |||  ||||||||||||||||  ||||||  |||||||||||||||||||||||||| || |||||||||||    
T  5350752 cccctcaagaaataaatttaatatcgtgtggaccattgtcccacatatcagatattaaactgataacaatagatactacac 5350672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 180
Target Start/End: Complemental strand, 33968654 - 33968558
Alignment:
Q  83 atgcaatagtgcaacgcatgagcgacacatgagaaatctagtagcaagctactaagatgacttctccccctcaaaaaagtaatttaatatcgtgtgat 180  Q
    |||||||||| |||||||| | | |||||  ||| ||||||||||||||||||| ||||   |||||||||  ||||||| ||||||||||| |||||    
T  33968654 atgcaatagttcaacgcataaacaacacacaagagatctagtagcaagctactatgatgttctctccccct-taaaaagttatttaatatcgcgtgat 33968558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 191 - 236
Target Start/End: Original strand, 19261152 - 19261197
Alignment:
Q  191 acatatcagatattaaactgataagaacagatactacacttgatct 236  Q
    |||||||||||||| ||| |||||||||| ||| ||||||||||||    
T  19261152 acatatcagatatttaacggataagaacatatattacacttgatct 19261197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 209
Target Start/End: Complemental strand, 13636429 - 13636365
Alignment:
Q  145 tctccccctcaaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaact 209  Q
    |||||||||||| ||  |||||||||| ||||||  || |||  |||||||||||||||||||||    
T  13636429 tctccccctcaagaacttaatttaataccgtgtggaccgttgatccacatatcagatattaaact 13636365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 123; Significance: 3e-63; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 54 - 236
Target Start/End: Original strand, 10791551 - 10791733
Alignment:
Q  54 aactagaattggtggggtgcgcctagctcatgcaatagtgcaacgcatgagcgacacatgagaaatctagtagcaagctactaagatgacttctccccct 153  Q
    |||||||||||||||||||  |||| ||||||||||||||||||||| ||||||||||||||||  ||| |||||||||| | |  || |||||||||||    
T  10791551 aactagaattggtggggtgtacctaactcatgcaatagtgcaacgcacgagcgacacatgagaagcctaatagcaagctattgaagtggcttctccccct 10791650  T
Q  154 caaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatct 236  Q
    |||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  10791651 caaaaaagtaatttaatatcatgtgacccattggatcacatatcagatattaaactgataagaacagatactacacttgatct 10791733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 54 - 236
Target Start/End: Original strand, 10795789 - 10795971
Alignment:
Q  54 aactagaattggtggggtgcgcctagctcatgcaatagtgcaacgcatgagcgacacatgagaaatctagtagcaagctactaagatgacttctccccct 153  Q
    ||||| |||||||||||||  |||| |||||||||||||||||||||  |||||||||||||||  ||| |||||||||| | |  || |||||||||||    
T  10795789 aactaaaattggtggggtgtacctaactcatgcaatagtgcaacgcacaagcgacacatgagaagcctaatagcaagctattgaagtggcttctccccct 10795888  T
Q  154 caaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatct 236  Q
    |||||||||||||||||||||||||| |||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  10795889 caaaaaagtaatttaatatcgtgtgacccattgggtcacatatcagatattaaactgataagaacagatactacacttgatct 10795971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 80 - 219
Target Start/End: Complemental strand, 11333413 - 11333273
Alignment:
Q  80 ctcatgcaatagtgcaacgcatgagcgacacatgagaaa-tctagtagcaagctactaagatgacttctccccctcaaaaaagtaatttaatatcgtgtg 178  Q
    |||||||||||||||||||||||||||||| |||||||| || ||||| |||||||| || |||||||||||||||||||||||||||||||||||||||    
T  11333413 ctcatgcaatagtgcaacgcatgagcgacatatgagaaagtccagtagtaagctactgaggtgacttctccccctcaaaaaagtaatttaatatcgtgtg 11333314  T
Q  179 atccattggaccacatatcagatattaaactgataagaaca 219  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  11333313 atccgttggaccacatatcagatattaaactgataagaaca 11333273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 65 - 236
Target Start/End: Complemental strand, 8875887 - 8875715
Alignment:
Q  65 gtggggtgcgcctagctcatgcaatagtgcaacgcatgagcgacacatgagaaatctagtagcaagctactaagatgacttctccccctcaaaaaagta- 163  Q
    |||||||||||   ||||||||| ||||||||||||||||||| ||||||||| || || ||||| |||  || |||  || || ||||||||||||||     
T  8875887 gtggggtgcgcaaggctcatgcactagtgcaacgcatgagcgatacatgagaagtccagcagcaaactatgaa-atggtttatctccctcaaaaaagtat 8875789  T
Q  164 -atttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatct 236  Q
     |||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  8875788 aatttaatatcgtgtaatctattggaccacatatcagatattaaattgataagaacagatattacacttgatct 8875715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 64 - 209
Target Start/End: Complemental strand, 13136752 - 13136607
Alignment:
Q  64 ggtggggtgcgcctagctcatgcaatagtgcaacgcatgagcgacacatgagaaatctagtagcaagctactaagatgacttctccccctcaaaaaagta 163  Q
    ||||||||||||| | || |||| |||||||||||||| ||||||||| |||||    ||||||||||||||   ||| || ||||| ||||||||||||    
T  13136752 ggtggggtgcgccaaactaatgctatagtgcaacgcattagcgacacaagagaagcagagtagcaagctactgcaatggctcctccctctcaaaaaagta 13136653  T
Q  164 atttaatatcgtgtgatccattggaccacatatcagatattaaact 209  Q
    |||||||||||||||  ||||||| |||||||||||||||||||||    
T  13136652 atttaatatcgtgtggaccattggtccacatatcagatattaaact 13136607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 145 - 236
Target Start/End: Complemental strand, 30521359 - 30521268
Alignment:
Q  145 tctccccctcaaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatct 236  Q
    ||||||||||||||||  |||| ||||||||||||  |  ||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  30521359 tctccccctcaaaaaataaattgaatatcgtgtgaggcgatggtccacatatcagatattaaactgataagaacagatactacacttgatct 30521268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 156 - 236
Target Start/End: Complemental strand, 21216131 - 21216051
Alignment:
Q  156 aaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatct 236  Q
    |||||||||||||||||  |||||| |||||  |||||||| |||||||||||||||||||| |||| ||| || ||||||    
T  21216131 aaaaagtaatttaatattttgtgattcattgagccacatataagatattaaactgataagaatagatgctatacatgatct 21216051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 135
Target Start/End: Complemental strand, 10509551 - 10509478
Alignment:
Q  62 ttggtggggtgcgcctagctcatgcaatagtgcaacgcatgagcgacacatgagaaatctagtagcaagctact 135  Q
    |||||||||||| || |||  |||| |||||||||||||| |||||||||  ||||  | ||||||||||||||    
T  10509551 ttggtggggtgctccaagccaatgctatagtgcaacgcattagcgacacacaagaagccgagtagcaagctact 10509478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 123; Significance: 3e-63; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 50 - 236
Target Start/End: Original strand, 38175425 - 38175611
Alignment:
Q  50 attgaactagaattggtggggtgcgcctagctcatgcaatagtgcaacgcatgagcgacacatgagaaatctagtagcaagctactaagatgacttctcc 149  Q
    |||||||||||||||||||||||||||  ||| ||| ||||||||||| ||| |||||||||||| ||| | || ||||||||||| || ||  ||||||    
T  38175425 attgaactagaattggtggggtgcgccaggcttatgtaatagtgcaacacataagcgacacatgataaacccagcagcaagctactgaggtggtttctcc 38175524  T
Q  150 ccctcaaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatct 236  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  38175525 ccctcaaaaaagtaatttaatatcgtgtgacccattggaacacatatcagatattaaactgataagaacagatactacacttgatct 38175611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 51 - 236
Target Start/End: Complemental strand, 14652736 - 14652551
Alignment:
Q  51 ttgaactagaattggtggggtgcgcctagctcatgcaatagtgcaacgcatgagcgacacatgagaaatctagtagcaagctactaagatgacttctccc 150  Q
    ||||||| ||||||||||||||||||  ||  |||| ||||||||||||||  |  ||||  |||||  |||||||||||||||||| ||| ||||||||    
T  14652736 ttgaacttgaattggtggggtgcgccacgccaatgctatagtgcaacgcattggaaacactcgagaagcctagtagcaagctactaaaatggcttctccc 14652637  T
Q  151 cctcaaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatct 236  Q
    ||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  14652636 cctcaaaaaagtaatttaatatcgtgtggaccattggtccacatatcagatattaaactgataagaacagatactacacttgatct 14652551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 51 - 236
Target Start/End: Complemental strand, 14662527 - 14662342
Alignment:
Q  51 ttgaactagaattggtggggtgcgcctagctcatgcaatagtgcaacgcatgagcgacacatgagaaatctagtagcaagctactaagatgacttctccc 150  Q
    ||||||| ||||||||||||||||||  ||  |||| ||||||||||||||  |  ||||  |||||  |||||||||||||||||| ||| ||||||||    
T  14662527 ttgaacttgaattggtggggtgcgccacgccaatgctatagtgcaacgcattggaaacactcgagaagcctagtagcaagctactaaaatggcttctccc 14662428  T
Q  151 cctcaaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatct 236  Q
    ||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  14662427 cctcaaaaaagtaatttaatatcgtgtggaccattggtccacatatcagatattaaactgataagaacagatactacacttgatct 14662342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 54 - 236
Target Start/End: Complemental strand, 14708786 - 14708604
Alignment:
Q  54 aactagaattggtggggtgcgcctagctcatgcaatagtgcaacgcatgagcgacacatgagaaatctagtagcaagctactaagatgacttctccccct 153  Q
    |||| ||||||||||||||||||  ||  ||||  ||||||||| |||   ||||||| |||||  ||| ||||||||||||||  |||| |||||||||    
T  14708786 aacttgaattggtggggtgcgccaggccaatgctgtagtgcaacacattgacgacacaagagaagcctaatagcaagctactaaagtgacctctccccct 14708687  T
Q  154 caaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatct 236  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  14708686 caaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatct 14708604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 120 - 236
Target Start/End: Complemental strand, 14681741 - 14681625
Alignment:
Q  120 ctagtagcaagctactaagatgacttctccccctcaaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaaca 219  Q
    |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  14681741 ctagtagcaagctactaaaatggcttctccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaaca 14681642  T
Q  220 gatactacacttgatct 236  Q
    |||||||||||||||||    
T  14681641 gatactacacttgatct 14681625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 61 - 236
Target Start/End: Complemental strand, 14680060 - 14679885
Alignment:
Q  61 attggtggggtgcgcctagctcatgcaatagtgcaacgcatgagcgacacatgagaaatctagtagcaagctactaagatgacttctccccctcaaaaaa 160  Q
    |||||| ||||||||| |||  ||||  |||||||||||||  || ||||   ||||  |||||||||||||||||| ||| ||||||||||||||||||    
T  14680060 attggtcgggtgcgccaagccaatgctgtagtgcaacgcattggcaacactcaagaagcctagtagcaagctactaatatggcttctccccctcaaaaaa 14679961  T
Q  161 gtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatct 236  Q
    ||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  14679960 gtaatttaatatcatgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatct 14679885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 120 - 236
Target Start/End: Complemental strand, 14674623 - 14674507
Alignment:
Q  120 ctagtagcaagctactaagatgacttctccccctcaaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaaca 219  Q
    |||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||    
T  14674623 ctagtagcaagctactaaaatggcttctccccctcaaaaaagtaatttaatatcatgtgaaccattggtccacatatcagatattaaactgataagaaca 14674524  T
Q  220 gatactacacttgatct 236  Q
    |||||||||||||||||    
T  14674523 gatactacacttgatct 14674507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 61 - 236
Target Start/End: Complemental strand, 14683951 - 14683776
Alignment:
Q  61 attggtggggtgcgcctagctcatgcaatagtgcaacgcatgagcgacacatgagaaatctagtagcaagctactaagatgacttctccccctcaaaaaa 160  Q
    ||||||||||||| || |||  |||| |||||||||| |||  | |||||| ||||   ||||||||||||||||||  |  | ||||||||||||||||    
T  14683951 attggtggggtgcaccaagccaatgctatagtgcaacacattggtgacacacgagaggactagtagcaagctactaaagttgcctctccccctcaaaaaa 14683852  T
Q  161 gtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatct 236  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  14683851 gtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatct 14683776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 54 - 236
Target Start/End: Original strand, 14654239 - 14654421
Alignment:
Q  54 aactagaattggtggggtgcgcctagctcatgcaatagtgcaacgcatgagcgacacatgagaaatctagtagcaagctactaagatgacttctccccct 153  Q
    |||| |||||||||||||| ||| |||  |||| ||||||||||  ||  |||||||| ||||   || ||||||||||||| |  || | |||||||||    
T  14654239 aacttgaattggtggggtgagccaagccaatgctatagtgcaacatattggcgacacacgagaggactcgtagcaagctactgaagtggcctctccccct 14654338  T
Q  154 caaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatct 236  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  14654339 caaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatct 14654421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 54 - 236
Target Start/End: Original strand, 14664030 - 14664212
Alignment:
Q  54 aactagaattggtggggtgcgcctagctcatgcaatagtgcaacgcatgagcgacacatgagaaatctagtagcaagctactaagatgacttctccccct 153  Q
    |||| |||||||||||||| ||| |||  |||| ||||||||||  ||  |||||||| ||||   || ||||||||||||| |  || | |||||||||    
T  14664030 aacttgaattggtggggtgagccaagccaatgctatagtgcaacatattggcgacacacgagaggactcgtagcaagctactgaagtggcctctccccct 14664129  T
Q  154 caaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatct 236  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  14664130 caaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatct 14664212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 54 - 236
Target Start/End: Complemental strand, 14716499 - 14716317
Alignment:
Q  54 aactagaattggtggggtgcgcctagctcatgcaatagtgcaacgcatgagcgacacatgagaaatctagtagcaagctactaagatgacttctccccct 153  Q
    |||| ||||||||||||||| || |||  |||| |||||||||| |||  |||||||| ||||    |||||||||||||||||  |  | |||||||||    
T  14716499 aacttgaattggtggggtgcaccaagccaatgctatagtgcaacacattggcgacacacgagaggattagtagcaagctactaaagttgcctctccccct 14716400  T
Q  154 caaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatct 236  Q
    |||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  14716399 caaaaaagtaatttaatatcgtgtgaaccattggtccacatattagatattaaactgataagaacagatactacacttgatct 14716317  T

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Target: chr1; HSP #12
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 60 - 236
Target Start/End: Original strand, 28366104 - 28366280
Alignment:
Q  60 aattggtggggtgcgcctagctcatgcaatagtgcaacgcatgagcgacacatgagaaatctagtagcaagctactaagatgacttctccccctcaaaaa 159  Q
    |||||||||| |||||| |||  ||||||||||||||||||| | |||||||||| | | |||||||||||||||||  ||    ||||||||| |||||    
T  28366104 aattggtgggatgcgcc-agccaatgcaatagtgcaacgcataaacgacacatgaaagacctagtagcaagctactataatagtctctcccccttaaaaa 28366202  T
Q  160 agtaatttaatatcgtgtgatccattggac-cacatatcagatattaaactgataagaacagatactacacttgatct 236  Q
    |||||||||||||||||||| |||||||   |||||||||||||||||||||||||||||||||||||||||||||||    
T  28366203 agtaatttaatatcgtgtgacccattggggtcacatatcagatattaaactgataagaacagatactacacttgatct 28366280  T

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Target: chr1; HSP #13
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 121 - 236
Target Start/End: Original strand, 14669675 - 14669790
Alignment:
Q  121 tagtagcaagctactaagatgacttctccccctcaaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacag 220  Q
    |||||||||||||||||  |  | ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  14669675 tagtagcaagctactaaagttgcctctccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacag 14669774  T
Q  221 atactacacttgatct 236  Q
    ||||||||||||||||    
T  14669775 atactacacttgatct 14669790  T

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Target: chr1; HSP #14
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 121 - 236
Target Start/End: Complemental strand, 14706229 - 14706114
Alignment:
Q  121 tagtagcaagctactaagatgacttctccccctcaaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacag 220  Q
    |||||||||||||||||  |  | ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  14706229 tagtagcaagctactaaagttgcctctccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacag 14706130  T
Q  221 atactacacttgatct 236  Q
    ||||||||||||||||    
T  14706129 atactacacttgatct 14706114  T

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Target: chr1; HSP #15
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 51 - 236
Target Start/End: Complemental strand, 33988280 - 33988096
Alignment:
Q  51 ttgaactagaattggtggggtgcgcctagctcatgcaatagtgcaacgcatgagcgacacatgagaaatctagtagcaagctactaagatgacttctccc 150  Q
    ||||||| |||| |||||||||||||   ||  ||||||||||||  |||| |||||||| ||| ||| | | |||||||||| | | ||| | ||||||    
T  33988280 ttgaacttgaatcggtggggtgcgccggcctt-tgcaatagtgcagagcataagcgacacttgaaaaacccaatagcaagctattgaaatggcctctccc 33988182  T
Q  151 cctcaaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatct 236  Q
    ||| |||||||||||||||||||||||||  |||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  33988181 ccttaaaaaagtaatttaatatcgtgtgactcattgagccacatatcagatattaaactgataagaacagatactacacttgatct 33988096  T

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Target: chr1; HSP #16
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 155 - 236
Target Start/End: Original strand, 11872481 - 11872562
Alignment:
Q  155 aaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatct 236  Q
    ||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  11872481 aaaaaagtaatttaatatcgtgtgacccattgaaccacatatcatatattaaactgataagaacagatagtacacttgatct 11872562  T

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Target: chr1; HSP #17
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 143 - 236
Target Start/End: Original strand, 14667099 - 14667192
Alignment:
Q  143 cttctccccctcaaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatct 236  Q
    |||||||||||  |||||||||||||||||| ||||| ||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||    
T  14667099 cttctccccctagaaaaagtaatttaatatcatgtgaaccattggtccacgtatcagatattaaactaataagaacagatactacacttgatct 14667192  T

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Target: chr1; HSP #18
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 167 - 236
Target Start/End: Complemental strand, 14676727 - 14676658
Alignment:
Q  167 taatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatct 236  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  14676727 taatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatct 14676658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 177 - 236
Target Start/End: Complemental strand, 37422254 - 37422195
Alignment:
Q  177 tgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatct 236  Q
    |||||| |||||||||||||||||||||||||||||||||||| || |||||||||||||    
T  37422254 tgatccgttggaccacatatcagatattaaactgataagaacatatgctacacttgatct 37422195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 144 - 214
Target Start/End: Original strand, 7448416 - 7448486
Alignment:
Q  144 ttctccccctcaaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataa 214  Q
    |||| ||| |||||||||||||| |||||||| | || |||| ||||||||||||||||||||||| ||||    
T  7448416 ttcttcccttcaaaaaagtaattcaatatcgtataattcatttgaccacatatcagatattaaactaataa 7448486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 209
Target Start/End: Complemental strand, 14703211 - 14703133
Alignment:
Q  131 ctactaagatgacttctccccctcaaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaact 209  Q
    |||||||  |||||| | ||||| |||||  |||||||||||||||||  | ||||| |||||||||| ||||||||||    
T  14703211 ctactaaagtgactttttcccctaaaaaatttaatttaatatcgtgtggactattggtccacatatcaaatattaaact 14703133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 114; Significance: 6e-58; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 51 - 236
Target Start/End: Complemental strand, 30734199 - 30734014
Alignment:
Q  51 ttgaactagaattggtggggtgcgcctagctcatgcaatagtgcaacgcatgagcgacacatgagaaatctagtagcaagctactaagatgacttctccc 150  Q
    ||||||| | |||||||||||||||| |||  ||||||||||||||||||   |||||||  |||||  |||||||||||||||||| ||| ||||||||    
T  30734199 ttgaacttggattggtggggtgcgccaagccaatgcaatagtgcaacgcactggcgacactcgagaagcctagtagcaagctactaaaatggcttctccc 30734100  T
Q  151 cctcaaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatct 236  Q
    ||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  30734099 cctaaaaaaagtaatttaatatcatgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatct 30734014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 53 - 236
Target Start/End: Complemental strand, 32918289 - 32918106
Alignment:
Q  53 gaactagaattggtggggtgcgcctagctcatgcaatagtgcaacgcatgagcgacacatgagaaatctagtagcaagctactaagatgacttctccccc 152  Q
    ||||||| ||||||| |||||||| | || |||| |||||||||||||| ||||||||| |||||    ||||||||||||||   ||| ||||||||||    
T  32918289 gaactaggattggtgaggtgcgccaaactaatgctatagtgcaacgcattagcgacacaagagaagcagagtagcaagctactgcaatggcttctccccc 32918190  T
Q  153 tcaaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatct 236  Q
    ||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  32918189 tcaaaaaagtaatttaatatcgtgtggaccattggtccacatatcagatattaaactgataagaacagatactacacttgatct 32918106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 52 - 236
Target Start/End: Complemental strand, 43850259 - 43850075
Alignment:
Q  52 tgaactagaattggtggggtgcgcctagctcatgcaatagtgcaacgcatgagcgacacatgagaaatctagtagcaagctactaagatgacttctcccc 151  Q
    |||||||| |||||| ||||||||| |||  |||||||||||||||||||  ||||||||| |||| || | |||||||||| | |  |||| |||||||    
T  43850259 tgaactagtattggttgggtgcgccaagcctatgcaatagtgcaacgcataggcgacacattagaagtccaatagcaagctattgaagtgacctctcccc 43850160  T
Q  152 ctcaaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatct 236  Q
    ||||||||||| |||||||||| |||||  |||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  43850159 ctcaaaaaagtgatttaatatcatgtgactcattgggccacatatcagatattaaactgataagaacagatactacacttgatct 43850075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 146 - 236
Target Start/End: Original strand, 2841008 - 2841098
Alignment:
Q  146 ctccccctcaaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatct 236  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2841008 ctccccctcaaaaaagtaatttaatatcgtgtgatccattgaaccacatatcagatattaaactgataagaacagatactacacttgatct 2841098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 62 - 236
Target Start/End: Original strand, 19232307 - 19232480
Alignment:
Q  62 ttggtggggtgcgcctagctcatgcaatagtgcaacgcatgagcgacacatgagaaatctagtagcaagctactaagatgacttctccccctcaaaaaag 161  Q
    ||||||||||||||| |||| ||||||||||||||||||| || ||||| ||||||  | | |||||||||| | |  || ||||||||||||||||| |    
T  19232307 ttggtggggtgcgccaagcttatgcaatagtgcaacgcataagtgacacttgagaagcccaatagcaagctattgaagtggcttctccccctcaaaaagg 19232406  T
Q  162 taatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatct 236  Q
    ||||||||||| |||||| ||| |||  |||||||||| ||||||||||||||||||||||| ||||||||||||    
T  19232407 taatttaatattgtgtgacccaatgggtcacatatcag-tattaaactgataagaacagatattacacttgatct 19232480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 54 - 236
Target Start/End: Complemental strand, 30732216 - 30732034
Alignment:
Q  54 aactagaattggtggggtgcgcctagctcatgcaatagtgcaacgcatgagcgacacatgagaaatctagtagcaagctactaagatgacttctccccct 153  Q
    |||| ||||||||||||||| ||   |  |||| |||||||||| |||   | ||||| |||||  ||||||||||||||| ||  || | || ||||||    
T  30732216 aacttgaattggtggggtgcaccagaccaatgctatagtgcaacacattgacaacacacgagaagcctagtagcaagctaccaaagtggcctccccccct 30732117  T
Q  154 caaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatct 236  Q
    |||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  30732116 caaaaaagtaatttaatatcgtgtgaaccattggtccacatattagatattaaactgataagaacagatactacacttgatct 30732034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 51 - 236
Target Start/End: Complemental strand, 8973523 - 8973338
Alignment:
Q  51 ttgaactagaattggtggggtgcgcctagctcatgcaatagtgcaacgcatgagcgacacatgagaaatctagtagcaagctactaagatgacttctccc 150  Q
    ||||||| |||||||||||| ||||| ||||||||||||||||||||||||  || |||| ||||||| | |  ||||||||| | | |||   ||||||    
T  8973523 ttgaacttgaattggtggggcgcgcc-agctcatgcaatagtgcaacgcatatgcaacacttgagaaacccaacagcaagctattgaaatggtctctccc 8973425  T
Q  151 cctcaaaaaagtaatttaatatcgt-gtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatct 236  Q
    ||| |||||||||||||||||| || |||| ||||||| ||||  ||||||||||||||| ||||||||||||||||||||||||||    
T  8973424 ccttaaaaaagtaatttaatattgttgtgacccattgggccactaatcagatattaaactaataagaacagatactacacttgatct 8973338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 50 - 236
Target Start/End: Complemental strand, 9008233 - 9008047
Alignment:
Q  50 attgaactagaattggtggggtgcgcctagctcatgcaatagtgcaacgcatgagcgacacatgagaaatctagtagcaagctactaagatgacttctcc 149  Q
    ||||||||||||||||||||||| ||| |||  |||||||||||||| ||||  ||||||| ||||||| | | || |||| || | | ||| | |||||    
T  9008233 attgaactagaattggtggggtgtgcc-agcgaatgcaatagtgcaaagcataggcgacacttgagaaacccaataacaagttattgaaatggcctctcc 9008135  T
Q  150 ccctcaaaaaagtaatttaatatcgtg-tgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatct 236  Q
    ||||||||||||||||||||||  ||  ||| ||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||    
T  9008134 ccctcaaaaaagtaatttaatactgttatgacccattgggccactaatcagatattaaactgataagaacagatactacacttgatct 9008047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 51 - 236
Target Start/End: Complemental strand, 9026997 - 9026812
Alignment:
Q  51 ttgaactagaattggtggggtgcgcctagctcatgcaatagtgcaacgcatgagcgacacatgagaaatctagtagcaagctactaagatgacttctccc 150  Q
    ||||||| ||||||| |||||| ||| |||  |||||||||||||| ||||  ||||||| ||||||| | | |||||||||| | | |||   ||||||    
T  9026997 ttgaacttgaattggaggggtgtgcc-agccaatgcaatagtgcaaagcataggcgacacttgagaaacccaatagcaagctattgaaatggtctctccc 9026899  T
Q  151 cctcaaaaaagtaatttaatatcgt-gtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatct 236  Q
     ||||||||||||||||||||  || |||| ||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||    
T  9026898 actcaaaaaagtaatttaatactgttgtgacccattgggccactaatcagatattaaactgataagaacagatactacacttgatct 9026812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 51 - 236
Target Start/End: Complemental strand, 9021058 - 9020873
Alignment:
Q  51 ttgaactagaattggtggggtgcgcctagctcatgcaatagtgcaacgcatgagcgacacatgagaaatctagtagcaagctactaagatgacttctccc 150  Q
    ||||||| ||||||||||||||| || | || ||||||||||||||| |||  | ||||| ||||||  | | ||||||| || | | ||| | |||| |    
T  9021058 ttgaacttgaattggtggggtgcaccaacct-atgcaatagtgcaacacataggtgacacttgagaagcccaatagcaagttattgaaatggcctctcac 9020960  T
Q  151 cctcaaaaaagtaatttaatatcgt-gtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatct 236  Q
    |||||||||||||||||||||  || |||| ||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||    
T  9020959 cctcaaaaaagtaatttaatactgtagtgacccattgggccacatctcagatattaaattgataagaacagatactacacttgatct 9020873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 83 - 234
Target Start/End: Original strand, 17225591 - 17225743
Alignment:
Q  83 atgcaatagtgcaacgcatgagcgacacatgagaaatctagtagcaagctactaagatgacttctccccctcaaaaaagtaatttaatatcgtgtgatcc 182  Q
    ||||||||||||||||||| ||||| | ||||||| || |  |  || ||||  |||||| |||||| ||||||||||||||||||||||||| |||| |    
T  17225591 atgcaatagtgcaacgcataagcgaaatatgagaagtccaacaataaactacatagatgatttctcctcctcaaaaaagtaatttaatatcgtatgattc 17225690  T
Q  183 attggaccacatatcagatattaaactgat-aagaacagatactacacttgat 234  Q
    ||||||||| ||||||| |||||||| ||| || |||||||||||||||||||    
T  17225691 attggaccagatatcagttattaaaccgataaaaaacagatactacacttgat 17225743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 124 - 231
Target Start/End: Original strand, 6471679 - 6471785
Alignment:
Q  124 tagcaagctactaagatgacttctccccctcaaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagata 223  Q
    |||||| ||| || |||||||||| ||||| |||||||||| |||||||| ||||||||||| ||||  ||||||||||||||||| ||||||||| |||    
T  6471679 tagcaaactattatgatgacttcttcccct-aaaaaagtaacttaatatcatgtgatccattagaccgtatatcagatattaaactaataagaacatata 6471777  T
Q  224 ctacactt 231  Q
    ||||||||    
T  6471778 ctacactt 6471785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 145 - 236
Target Start/End: Complemental strand, 9030515 - 9030424
Alignment:
Q  145 tctccccctcaaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatct 236  Q
    |||||||||||||||||||||||||||  |||||| ||||||  |||| | ||| |||||||| ||||||||||||||||||||||||||||    
T  9030515 tctccccctcaaaaaagtaatttaatactgtgtgacccattgagccacttctcaaatattaaattgataagaacagatactacacttgatct 9030424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 82 - 213
Target Start/End: Complemental strand, 8913116 - 8912983
Alignment:
Q  82 catgcaatagtgcaacgcatgagcgacacatgagaaatctagtagcaagctactaagatgacttctccccctcaaaaaagtaatttaatatc--gtgtga 179  Q
    ||||||||||||||| ||||  |||||| ||||| || | | |||||||||||| | |||   |||||||||||||||||||||||||||||  ||||||    
T  8913116 catgcaatagtgcaatgcataggcgacaaatgaggaaaccaatagcaagctactgaaatggtctctccccctcaaaaaagtaatttaatatcatgtgtga 8913017  T
Q  180 tccattggaccacatatcagatattaaactgata 213  Q
    | ||||||||||||||| | |||||||| |||||    
T  8913016 ttcattggaccacatattatatattaaaatgata 8912983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 145 - 231
Target Start/End: Complemental strand, 17275948 - 17275862
Alignment:
Q  145 tctccccctcaaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacactt 231  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||||||||| | | ||| |||||||||||||  |||||||||||    
T  17275948 tctccccctcaaaaatgtaattcaatatcgtgtgatccattggaccacatattaaagattgaactgataagaacgtatactacactt 17275862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 155 - 236
Target Start/End: Original strand, 10763878 - 10763959
Alignment:
Q  155 aaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatct 236  Q
    |||||||||||||||||| || ||  ||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  10763878 aaaaaagtaatttaatattgtatggaccattgatccacatatcagatattaaactgataagaacatatactacacttgatct 10763959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 189 - 236
Target Start/End: Complemental strand, 9032126 - 9032079
Alignment:
Q  189 ccacatatcagatattaaactgataagaacagatactacacttgatct 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  9032126 ccacatatcagatattaaactgataagaacagatactacacttgatct 9032079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 145 - 236
Target Start/End: Complemental strand, 9016614 - 9016519
Alignment:
Q  145 tctccccctcaaaaaagtaatttaata-tcgtgtgatccattggaccacatatcagatattaa---actgataagaacagatactacacttgatct 236  Q
    ||||||||||||||||||||||||||| |  ||||| ||||||| ||||  ||||||||||||   |||||||||||||||||||||| |||||||    
T  9016614 tctccccctcaaaaaagtaatttaatactgttgtgacccattgggccactaatcagatattaaactactgataagaacagatactacatttgatct 9016519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 149 - 236
Target Start/End: Complemental strand, 8992262 - 8992174
Alignment:
Q  149 cccctcaaaaaagtaatttaatatcgt-gtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatct 236  Q
    ||||||||||||||||||||||||  | |||| ||||||| ||||  |||||||||| |||| ||||||||| ||||||||||||||||    
T  8992262 cccctcaaaaaagtaatttaatattattgtgacccattgggccactaatcagatattgaactcataagaacatatactacacttgatct 8992174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 146 - 236
Target Start/End: Complemental strand, 35702005 - 35701915
Alignment:
Q  146 ctccccctcaaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatct 236  Q
    |||||||||||||||||||  |||||||||||||    |||| |||||||||| |||||||||| |||| |||| |||| |||||||||||    
T  35702005 ctccccctcaaaaaagtaaactaatatcgtgtgacttgttggcccacatatcaaatattaaactaataaaaacaaataccacacttgatct 35701915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 145 - 236
Target Start/End: Complemental strand, 8988573 - 8988481
Alignment:
Q  145 tctccccctcaaaaaagtaatttaatatcgt-gtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatct 236  Q
    |||| ||||||||||||||||||||||| || | || ||||||   |||  |||| |||||||||||||||||||| ||||||||||||||||    
T  8988573 tctcaccctcaaaaaagtaatttaatattgttgagaaccattgagtcactgatcaaatattaaactgataagaacaaatactacacttgatct 8988481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 181 - 236
Target Start/End: Complemental strand, 9023528 - 9023473
Alignment:
Q  181 ccattggaccacatatcagatattaaactgataagaacagatactacacttgatct 236  Q
    ||||||| ||||  ||||||||||||||| ||||||||||||||||||||||||||    
T  9023528 ccattgggccactaatcagatattaaactaataagaacagatactacacttgatct 9023473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 195 - 236
Target Start/End: Complemental strand, 8979389 - 8979348
Alignment:
Q  195 atcagatattaaactgataagaacagatactacacttgatct 236  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  8979389 atcaaatattaaactgataagaacagatactacacttgatct 8979348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 195 - 236
Target Start/End: Complemental strand, 8984760 - 8984719
Alignment:
Q  195 atcagatattaaactgataagaacagatactacacttgatct 236  Q
    |||| |||||||||| ||||||||| ||||||||||||||||    
T  8984760 atcaaatattaaactaataagaacaaatactacacttgatct 8984719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 186
Target Start/End: Original strand, 31659782 - 31659818
Alignment:
Q  150 ccctcaaaaaagtaatttaatatcgtgtgatccattg 186  Q
    |||| ||||||||||||||||||||| ||||||||||    
T  31659782 cccttaaaaaagtaatttaatatcgtatgatccattg 31659818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 107; Significance: 9e-54; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 50 - 236
Target Start/End: Complemental strand, 40054524 - 40054338
Alignment:
Q  50 attgaactagaattggtggggtgcgcctagctcatgcaatagtgcaacgcatgagcgacacatgagaaatctagtagcaagctactaagatgacttctcc 149  Q
    |||||||||| |||||||||||||||| |||| ||||||||||||||| ||| |||||||| | ||||  | | |||||||||| | |  || | |||||    
T  40054524 attgaactagtattggtggggtgcgccaagcttatgcaatagtgcaacacataagcgacacttaagaagcccaatagcaagctattgaagtggcctctcc 40054425  T
Q  150 ccctcaaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatct 236  Q
    |||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  40054424 ccctcaaaaaagtaatttaatatcgtatgacccattgggccacatatcagatattaaactgataagaacagatactacacttgatct 40054338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 50 - 236
Target Start/End: Complemental strand, 44879194 - 44879009
Alignment:
Q  50 attgaactagaattggtggggtgcgcctagctcatgcaatagtgcaacgcatgagcgacacatgagaaatctagtagcaagctactaagatgacttctcc 149  Q
    |||||||||  |||||||||||||||| |||  ||||||||||||||||||| ||||||||   |||| |  | |||||||||| |  ||||||||||||    
T  44879194 attgaactaagattggtggggtgcgcc-agcctatgcaatagtgcaacgcataagcgacactcaagaagttcaatagcaagctattgtgatgacttctcc 44879096  T
Q  150 ccctcaaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatct 236  Q
    |||||||||||||||||||||||| ||||| ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  44879095 ccctcaaaaaagtaatttaatatcatgtgacccattgagccacatatcagatattaaactgataagaacagatactacacttgatct 44879009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 50 - 236
Target Start/End: Original strand, 44880727 - 44880912
Alignment:
Q  50 attgaactagaattggtggggtgcgcctagctcatgcaatagtgcaacgcatgagcgacacatgagaaatctagtagcaagctactaagatgacttctcc 149  Q
    |||||||||  |||||||||||||||| |||  ||||||||||||||||||| ||||||||   |||| |  | |||||||||| |  ||||||||||||    
T  44880727 attgaactaagattggtggggtgcgcc-agcctatgcaatagtgcaacgcataagcgacactcaagaagttcaatagcaagctattgtgatgacttctcc 44880825  T
Q  150 ccctcaaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatct 236  Q
    |||||||||||||||||||||||| ||||| ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  44880826 ccctcaaaaaagtaatttaatatcatgtgacccattgagccacatatcagatattaaactgataagaacagatactacacttgatct 44880912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 54 - 236
Target Start/End: Original strand, 10944298 - 10944480
Alignment:
Q  54 aactagaattggtggggtgcgcctagctcatgcaatagtgcaacgcatgagcgacacatgagaaatctagtagcaagctactaagatgacttctccccct 153  Q
    |||| |||||||||||||||||| | |  |||| |||||||||||||  || |||||   ||||  |||||||||||||||||| ||| ||||||||| |    
T  10944298 aacttgaattggtggggtgcgccaaaccaatgctatagtgcaacgcaatagtgacactcaagaagcctagtagcaagctactaaaatggcttctccccat 10944397  T
Q  154 caaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatct 236  Q
    |||||||||||||||||||||||||| ||||| | |||||||| |||||||||||||||||||||||||||||||||||||||    
T  10944398 caaaaaagtaatttaatatcgtgtgaaccatttgtccacatataagatattaaactgataagaacagatactacacttgatct 10944480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 54 - 236
Target Start/End: Original strand, 41841052 - 41841233
Alignment:
Q  54 aactagaattggtggggtgcgcctagctcatgcaatagtgcaacgcatgagcgacacatgagaaatctagtagcaagctactaagatgacttctccccct 153  Q
    ||||| ||||| ||||||||||| ||| |||||||||||||||| |||  |||||||  |||||  | | |||||||||| |  | || ||||||||| |    
T  41841052 aactaaaattgatggggtgcgcc-agcccatgcaatagtgcaacacataggcgacactcgagaagcccaatagcaagctattggggtggcttctccccat 41841150  T
Q  154 caaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatct 236  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41841151 caaaaaagtaatttaatatcgtgtgacccattggaccacatatcagatattaaactgataagaacagatactacacttgatct 41841233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 138 - 236
Target Start/End: Complemental strand, 44582977 - 44582879
Alignment:
Q  138 gatgacttctccccctcaaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatct 236  Q
    ||||||||||| |||||||||||||||||||||||| |   ||||||||  | ||||||||||||||||||||||||||||||||||||||||||||||    
T  44582977 gatgacttctctccctcaaaaaagtaatttaatatcatagaatccattgagctacatatcagatattaaactgataagaacagatactacacttgatct 44582879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 163 - 236
Target Start/End: Complemental strand, 37682156 - 37682083
Alignment:
Q  163 aatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatct 236  Q
    ||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  37682156 aatttaatatcgtgtggaccattggcccacatatcagatattaaactgataagaacagatactacacttgatct 37682083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 145 - 236
Target Start/End: Complemental strand, 37679872 - 37679781
Alignment:
Q  145 tctccccctcaaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatct 236  Q
    |||||||||||| |||  |||||||||||  |||  ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  37679872 tctccccctcaataaataaatttaatatcaagtggaccattggcccacatatcagatattaaactgataagaacagatactacacttgatct 37679781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 126 - 236
Target Start/End: Original strand, 42555053 - 42555164
Alignment:
Q  126 gcaagctactaagatgacttctccccctcaaaaaag-taatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatac 224  Q
    |||||||||| ||||| ||||| ||| ||||||||  ||||||||||||||||||| ||||| ||||||||||| ||||||||||||||| ||||||| |    
T  42555053 gcaagctactgagatggcttcttcccttcaaaaaacataatttaatatcgtgtgattcattgaaccacatatcaaatattaaactgataaaaacagattc 42555152  T
Q  225 tacacttgatct 236  Q
    | ||||||||||    
T  42555153 tgcacttgatct 42555164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 82 - 202
Target Start/End: Original strand, 42554589 - 42554709
Alignment:
Q  82 catgcaatagtgcaacgcatgagcgacacatgagaaatctagtagcaagctactaagatgacttctccccctcaaaaaagtaatttaatatcgtgtgatc 181  Q
    |||||||||||||||||||   ||||||  ||||||    || ||||| ||||| ||||| |||||||||||||||||| |||||||||||||||| ||     
T  42554589 catgcaatagtgcaacgcaaaggcgacatttgagaagctcagaagcaaactactgagatggcttctccccctcaaaaaaataatttaatatcgtgtaatt 42554688  T
Q  182 cattggaccacatatcagata 202  Q
    |||||  ||||||||||||||    
T  42554689 cattgacccacatatcagata 42554709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 85 - 202
Target Start/End: Complemental strand, 11178062 - 11177945
Alignment:
Q  85 gcaatagtgcaacgcatgagcgacacatgagaaatctagtagcaagctactaagatgacttctccccctcaaaaaagtaatttaatatcgtgtgatccat 184  Q
    |||||||||||||| || ||||||| |||||||  ||| || |||  || ||| ||| ||||||| |||||||| |||||||||||||| ||||| | ||    
T  11178062 gcaatagtgcaacgtataagcgacatatgagaagactaataacaaaatattaaaatggcttctcctcctcaaaagagtaatttaatatcatgtgacctat 11177963  T
Q  185 tggaccacatatcagata 202  Q
    || | |||||||| ||||    
T  11177962 tgaatcacatatctgata 11177945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 188 - 231
Target Start/End: Complemental strand, 42092094 - 42092051
Alignment:
Q  188 accacatatcagatattaaactgataagaacagatactacactt 231  Q
    |||||||||||||||||||||||||||||||| ||| |||||||    
T  42092094 accacatatcagatattaaactgataagaacaaatattacactt 42092051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 236
Target Start/End: Original strand, 42220880 - 42220926
Alignment:
Q  189 ccacatatcagatattaaactgataagaacagatactacacttgatct 236  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  42220880 ccacatatcagatattaaactaataagaa-agatactacacttgatct 42220926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 209
Target Start/End: Complemental strand, 44583162 - 44583110
Alignment:
Q  156 aaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaact 209  Q
    |||||||||||||||||||||||  ||||| |  ||||||||||||||||||||    
T  44583162 aaaaagtaatttaatatcgtgtgtaccatt-gttcacatatcagatattaaact 44583110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 3e-41; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 79 - 236
Target Start/End: Complemental strand, 27134694 - 27134537
Alignment:
Q  79 gctcatgcaatagtgcaacgcatgagcgacacatgagaaatctagtagcaagctactaagatgacttctccccctcaaaaaagtaatttaatatcgtgtg 178  Q
    |||||||||||||||||||||||||||||||||||||||  | |  ||||| ||| | || || ||||||||||||||||||||||||||||||||| ||    
T  27134694 gctcatgcaatagtgcaacgcatgagcgacacatgagaagcccaacagcaaactattgaggtgtcttctccccctcaaaaaagtaatttaatatcgtttg 27134595  T
Q  179 atccattggaccacatatcagatattaaactgataagaacagatactacacttgatct 236  Q
    |  |||| ||||||||||||||||||||||  |||||||||||||||| | |||||||    
T  27134594 actcattagaccacatatcagatattaaaccaataagaacagatactagatttgatct 27134537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 145 - 236
Target Start/End: Complemental strand, 8128259 - 8128169
Alignment:
Q  145 tctccccctcaaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatct 236  Q
    |||||||||||| |||  |||||||||| |||||| ||||||| |||||||||| |||||||||| | ||||||| ||||||||||| ||||    
T  8128259 tctccccctcaagaaataaatttaatattgtgtga-ccattggcccacatatcatatattaaactaaaaagaacatatactacacttaatct 8128169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 132
Target Start/End: Complemental strand, 22079714 - 22079645
Alignment:
Q  63 tggtggggtgcgcctagctcatgcaatagtgcaacgcatgagcgacacatgagaaatctagtagcaagct 132  Q
    |||||||||||||  |||  ||||||||||||||||||| ||||||| | ||||| || | |||||||||    
T  22079714 tggtggggtgcgcaaagcctatgcaatagtgcaacgcataagcgacaaacgagaagtccaatagcaagct 22079645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0549 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0549
Description:

Target: scaffold0549; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 145 - 211
Target Start/End: Complemental strand, 5513 - 5447
Alignment:
Q  145 tctccccctcaaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactga 211  Q
    ||||| ||||||||||  ||||||||||||||||| | ||||| ||| |||||||||||||||||||    
T  5513 tctccacctcaaaaaataaatttaatatcgtgtgaacaattggcccatatatcagatattaaactga 5447  T

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