View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2761_low_44 (Length: 225)
Name: NF2761_low_44
Description: NF2761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2761_low_44 |
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Alignment Details
Target: chr8 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 19 - 200
Target Start/End: Original strand, 29467352 - 29467534
Alignment:
| Q |
19 |
tcctccatgctttgttggctggcagtgacagagccacatataagtgaggggatgcagagaagagaattttcaattgcacatgctgctatattttatttct |
118 |
Q |
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| T |
29467352 |
tcctccatgctttgttggctggcagtgacagagccacatataagagaggggatgcagagaagagaattttcaattgcacatgctgctatattttatttct |
29467451 |
T |
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| Q |
119 |
atttgaacctcctgaattgtttatactgcatctgccataaagttcttgaatcttgcataa-ttgacttgacttgcttttgata |
200 |
Q |
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| T |
29467452 |
atttgaacctcctgaattgtttatactgcatctcgcataaagttcttgaatcttgcataatttgacttgacttgcttttgata |
29467534 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 151
Target Start/End: Original strand, 15176122 - 15176182
Alignment:
| Q |
92 |
ttgcacatgctgc-tatattttatttctatttgaacctcctgaattgtttatactgcatct |
151 |
Q |
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| T |
15176122 |
ttgcacatgctgcatgtattttatttctatttgaacgtcctaatttttttatattgcatct |
15176182 |
T |
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