View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2761_low_5 (Length: 649)
Name: NF2761_low_5
Description: NF2761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2761_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 620; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 620; E-Value: 0
Query Start/End: Original strand, 1 - 632
Target Start/End: Original strand, 49106713 - 49107344
Alignment:
| Q |
1 |
tatatgcagtaccaccttgtgactggctcttacacaccactcccgtgcgtgactcaacacttattttctgctgcaaactttcattataaatattaaatgt |
100 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49106713 |
tatatgcagtaccaccttgtgactgactcttacacaccactcccgtgcgtgactcaacacttattttctgctgcaaactttcattataaatattaaatgt |
49106812 |
T |
|
| Q |
101 |
gatgagagattgttgaatacaacattgaaacaatgcctccagtatcaatcaaaatcaaaatgggagataagtatcatatctcaaattaaaatagtctgca |
200 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49106813 |
gatgagagattgttgaatacaacattgaaacaattcctccagtatcaatcaaaatcaaaatgggagataagtatcatatctcaaattaaaatagtctgca |
49106912 |
T |
|
| Q |
201 |
attatactaactatgagttttgagtttgaaaagtgtaaggctactttcacaattagggaatttacttcataacttgtaatacttttatgctacaaaattc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49106913 |
attatactaactatgagttttgagtttgaaaagtgtaaggctactttcacaattagggaatttacttcataacttgtaatacttttatgctacaaaattc |
49107012 |
T |
|
| Q |
301 |
tccgttacttgacattatcatcacaatcaattgagggaatttccatggttattaatccaaacaatatttattactctaagctacaaacattgccctttct |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49107013 |
tccgttacttgacattatcatcacaatcaattgagggaatttccatggttattaatccaaacaatatttattactctaagctacaaacattgccctttct |
49107112 |
T |
|
| Q |
401 |
atcatatcttgaagttgtttaggcttcacaactttccttgtaggtaccttatttggactgcattggttggcacgtgtacaggaaagtgaagttccataat |
500 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49107113 |
atcatatcttgaagttgtttaggcttcacaactttccttgtaggtaccttatttggactgcattggttggcacgtgtacaggaaagtgaagttccataat |
49107212 |
T |
|
| Q |
501 |
acattgatgaatctaagagatgtcatccctctttaaagatgtttgatgagtctacagagctaaatgtctaagaaggaaatgccattttaagtgctactgt |
600 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
49107213 |
acattgatgaatctaagagatgtcatccctctttaaagatgtttgatgagtctacagagctaaatgtctaagaaggaaatgccattgtaagtgctactgt |
49107312 |
T |
|
| Q |
601 |
agattttgacaagttatcttcttccattggtg |
632 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
49107313 |
agattttgacaagttatcttcttccattggtg |
49107344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 178 - 329
Target Start/End: Original strand, 50077860 - 50078011
Alignment:
| Q |
178 |
atctcaaattaaaatagtctgcaattatactaactatgagttttgagtttgaaaagtgtaaggctactttcacaattagggaatttacttcataacttgt |
277 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||| |||||||| |||||| ||||||| |
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| T |
50077860 |
atctcaaattaaaatagtctgcaattatactaactatgagttttgagtttgaaaagtttaaggctacgttcataatcagggaattcacttcagaacttgt |
50077959 |
T |
|
| Q |
278 |
aatacttttatgctacaaaattctccgttacttgacattatcatcacaatca |
329 |
Q |
| |
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|| ||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
50077960 |
gattcttttatgctacaaaattctctattacttgacattatcatcacaatca |
50078011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 227 - 405
Target Start/End: Complemental strand, 50112228 - 50112050
Alignment:
| Q |
227 |
tgaaaagtgtaaggctactttcacaattagggaatttacttcataacttgtaatacttttatgctacaaaattctccgttacttgacattatcatcacaa |
326 |
Q |
| |
|
|||| ||| ||||||||| ||||||||| ||||||| |||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
50112228 |
tgaagagtttaaggctacgttcacaatttgggaattcacttcataacttgtgattcttttatgctacaaaattctcttttacttgacattatcatcacaa |
50112129 |
T |
|
| Q |
327 |
tcaattgagggaatttccatggttattaatccaaacaatatttattactctaagctacaaacattgccctttctatcat |
405 |
Q |
| |
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||| |||| ||||||| | ||||||||| ||||||||| |||||||| ||||||| ||||||||| ||||||||||| |
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|
| T |
50112128 |
tcatctgagttaatttcccttgttattaattcaaacaatacttattactttaagctataaacattgcgctttctatcat |
50112050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 180; Significance: 7e-97; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 180; E-Value: 7e-97
Query Start/End: Original strand, 2 - 329
Target Start/End: Original strand, 10796110 - 10796421
Alignment:
| Q |
2 |
atatgcagtaccaccttgtgactggctcttacacaccactcccgtgcgtgactcaacacttattttctgctgcaaactttcattataaatattaaatgtg |
101 |
Q |
| |
|
|||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| | | ||||||||| |
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| T |
10796110 |
atatgcagtagcaccttgtgactgactcttacacaccactcccgtgcgtgactcaccacttattttctgctgcaaattttcattatcagttttaaatgtg |
10796209 |
T |
|
| Q |
102 |
atgagagattgttgaatacaaca-ttgaaacaatgcctccagtatcaatcaaaatcaaaatgggagataagtatcatatctcaaattaaaatagtctgca |
200 |
Q |
| |
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| ||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||| || ||||||||||||||||||||||| |
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| T |
10796210 |
acgagagattgttgaatacaacaattgaaacaatgcatccagtatcaa----aatcaaaat-------------cacatctcaaattaaaatagtctgca |
10796292 |
T |
|
| Q |
201 |
attatactaactatgagttttgagtttgaaaagtgtaaggctactttcacaattagggaatttacttcataacttgtaatacttttatgctacaaaattc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||| |||| ||| |||||||| |||||| ||||||| || ||||||||||||||||||| |
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| T |
10796293 |
attatactaactatgagttttgagtttgaaaagtttaaggctacgttcataatcagggaattcacttcagaacttgtgattcttttatgctacaaaattc |
10796392 |
T |
|
| Q |
301 |
tccgttacttgacattatcatcacaatca |
329 |
Q |
| |
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|| ||||||||||||||||||||||||| |
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|
| T |
10796393 |
tctattacttgacattatcatcacaatca |
10796421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 378 - 434
Target Start/End: Complemental strand, 44769973 - 44769918
Alignment:
| Q |
378 |
aagctacaaacattgccctttctatcatatcttgaagttgtttaggcttcacaactt |
434 |
Q |
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||||||||||||||||||| | ||| |||| ||||||||||||||||||| ||||| |
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| T |
44769973 |
aagctacaaacattgccctgtatat-atatgctgaagttgtttaggcttcagaactt |
44769918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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