View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2761_low_6 (Length: 593)
Name: NF2761_low_6
Description: NF2761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2761_low_6 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 354 - 593
Target Start/End: Complemental strand, 9453031 - 9452791
Alignment:
| Q |
354 |
tatttacttgtttatgaaccctattgttgctcttttaagatgaagcggtgaattcattaaatataagatccaatggatggtgtgttgtcaactcattctg |
453 |
Q |
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| T |
9453031 |
tatttacttgtttatgaaccctattgttgctcttttaagatgaagcggtaaattcattaaatataagatctaatggatggtgtgttgccatctcattcta |
9452932 |
T |
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| Q |
454 |
gaagcttttgtgaaaaatcctctcgcggtatctagcatttttcttataaaatatctttgccatctcaaattgtt-ttttgacaaagttttatttatctaa |
552 |
Q |
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| T |
9452931 |
gaagctttcgtgaaaaatcctctcgcggtatctagcatttttcttataaaatatctttgccatctcaaattgtttttttgacaaagttttatttttctaa |
9452832 |
T |
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| Q |
553 |
ccaaatctaatttaggtactattataatagagcaaggaatt |
593 |
Q |
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| T |
9452831 |
ccaaatctaatttatgtactatcataatagagcaaggaatt |
9452791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 151; Significance: 1e-79; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 21546375 - 21546596
Alignment:
| Q |
18 |
acatacaaaaaatagttgattgtaataactgcactatgggaaatatgatttgcagtaatcatgactgaatgagaagaatgccataaacataaaattatgt |
117 |
Q |
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| T |
21546375 |
acatacaaaaaatagttgactgtagtaactacactatgggaaatatgatttgcggcaatcatgactgaatgagaa---tgccataaacataaaatcatgt |
21546471 |
T |
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| Q |
118 |
gtaacttccaaattaatgtatgggaaattaatgggagata-ttttttggtagctgataagagcgattgaaggtgggtttgctgtgcaatgctttactgtc |
216 |
Q |
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| T |
21546472 |
gtaacttccaaattaatgtatgggaaatgaatgggagatatttttttggcagctgataggagcgattaaaggtggatttgatgtgcaacgctttactgtc |
21546571 |
T |
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| Q |
217 |
aaatattcattagaaattataaaat |
241 |
Q |
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| T |
21546572 |
aaatattcattagaaattataaaat |
21546596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 497 - 593
Target Start/End: Original strand, 21546588 - 21546684
Alignment:
| Q |
497 |
ttataaaatatctttgccatctcaaattgttttttgacaaagttttatttatctaaccaaatctaatttaggtactattataatagagcaaggaatt |
593 |
Q |
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| T |
21546588 |
ttataaaatatctttgtcatatcaaattgttttttgacaaagttttatttatctaaccaaatctaatttatgtactatcataatagagcaaggaatt |
21546684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 95; Significance: 3e-46; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 304 - 496
Target Start/End: Complemental strand, 46424267 - 46424083
Alignment:
| Q |
304 |
attaaaagcaattactgggcggaaaacacttgcgtgctttgtgttattattatttacttgtttatgaaccctattgttgctcttttaagatgaagcggtg |
403 |
Q |
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| T |
46424267 |
attaaaag-aattactggccggaaatcatgtgtgtgctttgtgctattgttatttacttgtttaaaaaccatgttgttgctcttttaagatgaagcgatg |
46424169 |
T |
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| Q |
404 |
aattcattaaatataagatccaatggatggtgtgttgtcaactcattctggaagcttttgtgaaaaatcctctcgcggtatctagcatttttc |
496 |
Q |
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| T |
46424168 |
aattcattaaatataagatccaatggatggtgtgttgtcaactcat-------gctttcgtgaaaaaccctcttgctgtatctagcatttttc |
46424083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 31555007 - 31554958
Alignment:
| Q |
21 |
tacaaaaaatagttgattgtaataactgcactatgggaaatatgatttgc |
70 |
Q |
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| T |
31555007 |
tacaaaaaatagttgactctaataactacaaaatgggaaatatgatttgc |
31554958 |
T |
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