View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2761_low_7 (Length: 587)
Name: NF2761_low_7
Description: NF2761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2761_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 476; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 16 - 569
Target Start/End: Complemental strand, 31543943 - 31543391
Alignment:
| Q |
16 |
aatattcacaaattgtttattttctgattccaaaccccactttgaggtcacatgaactgtgtttttatcagcaagaaaaagcatggtatcactaagacta |
115 |
Q |
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| T |
31543943 |
aatattcacaaattgtttattttctgattccaaaccccactttgaggtcacatgaactgtgtttttatcagcaagcaaaagcatggtattactaagacta |
31543844 |
T |
|
| Q |
116 |
gtttggagccttaaactatataataatggcattattaactttgtagatgatatcaatatgtggcctaaaataatatcttttatcatcctttttgggtggt |
215 |
Q |
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| T |
31543843 |
gtttggagccttaaactatataataatggcattattaactttgtagatcatatcaatatgtggcctaaaataatatcttttatcatcctttttgagtggt |
31543744 |
T |
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| Q |
216 |
ttcaagggacaaattatatgtttaagtgctaactaagtaaccaccttttgtttcaataatttgtgaattttctggttcaattgcctccaagttggaaatc |
315 |
Q |
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| T |
31543743 |
ttcaagggacaaattctatgtataagtgctaactaagtaaccaccttttgtttcaataatttgtgaattttctggttcaattgcctccaagttggaaatc |
31543644 |
T |
|
| Q |
316 |
aaagctaatattccaannnnnnngatgggtggagaggctcttatggaagaaactgtttattttggatttcaaaccccactttgtgggctgtgtttataca |
415 |
Q |
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||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31543643 |
aaagccaatattccaatttttttgatgggtggagaggctcttatggaagaaactgtttattttggatttcaaaccccactttgtgggctgtgtttataca |
31543544 |
T |
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| Q |
416 |
catcaccatgcttattatctaaactaatctaaatnnnnnnnnttcatgtagggtttcaagcaaacttaaaataataacattattgatcataaatataaac |
515 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31543543 |
catcaccatgcttattatctaaactaatctaaat-aaaaaaattcatgtagggtttcaagcaaacttaaaataataacattattgatcataaatataaac |
31543445 |
T |
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| Q |
516 |
aagtgacattaatatgtgaccaataataatatgttatgtaatcctcattgatgc |
569 |
Q |
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| T |
31543444 |
aagtgacattaatatgtgaccaataataatatgttatgtaatcctcattgatgc |
31543391 |
T |
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