View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2762_high_3 (Length: 613)
Name: NF2762_high_3
Description: NF2762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2762_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 18 - 351
Target Start/End: Original strand, 47512371 - 47512704
Alignment:
| Q |
18 |
aaaagacttgttggacaatcaaatattattcaacacacaaaattcgaagtctctatacaattccatgaggtctttcctttgcaaaatttaataaaagtac |
117 |
Q |
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| T |
47512371 |
aaaagacttgttggacaatcaaatattattcaacacacaaaattcgaagtctctatacaattccatgaggtctttcctttgcaaaatttaataaaagtac |
47512470 |
T |
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| Q |
118 |
tttcaacacatgatttaaattttaaactccaaaacgacaaaaacacaaggaaacaacttcgtcacgtcacgtgttccacacatccgcgtaagcaacccga |
217 |
Q |
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| T |
47512471 |
tttcaacacatgatttaaattttaaactccaaaacgacaaaaacacaagtaaacaacttcgtcacgtcacgtgttccacacatccgcgtaagcaacccga |
47512570 |
T |
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| Q |
218 |
caaatgccacgtgtctccatgtcggcaaacaaaagaatccaatcaacggcctacaacatgccacgcaatcacacaacacaccaaataatcttttgacaac |
317 |
Q |
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| T |
47512571 |
caaatgccacgtgtctccatgtcggcaaacaaaagaatccaatcaacggcctacaacatgccacgcaatcacacaacacaccaaataatcttttgacaaa |
47512670 |
T |
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| Q |
318 |
tccaccgaatattccgtttatttatttggtccac |
351 |
Q |
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| T |
47512671 |
tccaccgaatattccgtttatttatttggtccac |
47512704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 376 - 605
Target Start/End: Original strand, 47512739 - 47512968
Alignment:
| Q |
376 |
cctcgccgcgttctttttcttcttattataaaaacctaatcctcagattattgaagattgtttccgagttagaagattaaacaaattcttatctcaatct |
475 |
Q |
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| T |
47512739 |
cctcgccgcgtgctttttcttcttattataaaaacctaatcctcagattattgaagattgtttccgagttagaagattaaacaaattcttatctcaatct |
47512838 |
T |
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| Q |
476 |
cagaaagtagtgttcgaattttgaatggattattcatcaaccgaatcaaaatcagtcttattattctcaattttcatacctttcaattcccnnnnnnnnc |
575 |
Q |
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| T |
47512839 |
cagaaagtagtgttcgaattttgaatggattattcatcaaccgaatcaaaatcagccttattattctcaattttcatacctttcaattcccttttttttc |
47512938 |
T |
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| Q |
576 |
gttcttgtaaacctaattattcttcatctc |
605 |
Q |
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| T |
47512939 |
gttcttgtaaacctaattattcttcatctc |
47512968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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