View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2762_high_7 (Length: 420)

Name: NF2762_high_7
Description: NF2762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2762_high_7
NF2762_high_7
[»] chr1 (19 HSPs)
chr1 (136-267)||(39495637-39495768)
chr1 (241-406)||(39415716-39415880)
chr1 (172-387)||(50092003-50092218)
chr1 (318-406)||(39495764-39495852)
chr1 (6-80)||(39495507-39495581)
chr1 (307-406)||(22560240-22560339)
chr1 (311-387)||(31458845-31458921)
chr1 (311-387)||(35368405-35368481)
chr1 (243-406)||(6632560-6632723)
chr1 (311-387)||(36193272-36193348)
chr1 (243-406)||(13133063-13133232)
chr1 (311-387)||(32641461-32641537)
chr1 (304-388)||(10386386-10386470)
chr1 (311-387)||(51128509-51128585)
chr1 (304-387)||(24561548-24561631)
chr1 (304-388)||(6333104-6333188)
chr1 (309-383)||(38029786-38029860)
chr1 (317-389)||(22816550-22816622)
chr1 (317-383)||(20417613-20417679)
[»] chr8 (9 HSPs)
chr8 (244-406)||(12230269-12230431)
chr8 (311-387)||(38891839-38891915)
chr8 (304-388)||(24732723-24732807)
chr8 (304-388)||(41692233-41692317)
chr8 (309-388)||(43599077-43599156)
chr8 (304-388)||(13403668-13403749)
chr8 (319-387)||(36780636-36780704)
chr8 (172-211)||(13403532-13403571)
chr8 (315-383)||(15045898-15045966)
[»] chr4 (23 HSPs)
chr4 (234-376)||(25241876-25242017)
chr4 (244-406)||(10462473-10462635)
chr4 (311-387)||(7446350-7446426)
chr4 (311-387)||(10009663-10009739)
chr4 (304-383)||(32045521-32045600)
chr4 (311-387)||(26017669-26017745)
chr4 (304-385)||(38948353-38948434)
chr4 (308-388)||(25459497-25459577)
chr4 (309-388)||(19310060-19310139)
chr4 (310-388)||(5592335-5592413)
chr4 (310-388)||(48125957-48126035)
chr4 (304-388)||(2398404-2398488)
chr4 (309-381)||(8933210-8933282)
chr4 (309-393)||(14528336-14528420)
chr4 (304-388)||(53679586-53679670)
chr4 (346-388)||(43470278-43470320)
chr4 (304-387)||(19836718-19836801)
chr4 (350-388)||(36188710-36188748)
chr4 (172-210)||(38948532-38948570)
chr4 (309-383)||(42766184-42766258)
chr4 (319-387)||(13840806-13840874)
chr4 (323-383)||(20248770-20248830)
chr4 (329-381)||(42674941-42674993)
[»] chr2 (20 HSPs)
chr2 (252-406)||(34358744-34358898)
chr2 (274-406)||(17930648-17930780)
chr2 (304-388)||(3153711-3153795)
chr2 (304-387)||(34385384-34385467)
chr2 (311-387)||(6469058-6469134)
chr2 (299-387)||(23289919-23290007)
chr2 (309-383)||(16203029-16203103)
chr2 (311-387)||(536308-536384)
chr2 (304-388)||(10059925-10060009)
chr2 (285-406)||(32170891-32171016)
chr2 (304-384)||(39768612-39768692)
chr2 (304-388)||(79358-79442)
chr2 (304-388)||(44939813-44939897)
chr2 (311-359)||(30255640-30255688)
chr2 (304-375)||(6432714-6432785)
chr2 (309-387)||(14163981-14164059)
chr2 (304-388)||(1222553-1222637)
chr2 (304-376)||(23390542-23390614)
chr2 (309-383)||(17926980-17927054)
chr2 (314-363)||(32598785-32598834)
[»] chr3 (20 HSPs)
chr3 (177-387)||(14608898-14609107)
chr3 (284-406)||(37166272-37166394)
chr3 (303-387)||(26376655-26376739)
chr3 (311-387)||(15372355-15372431)
chr3 (249-406)||(8845627-8845782)
chr3 (311-387)||(25617563-25617639)
chr3 (311-387)||(33980608-33980683)
chr3 (304-387)||(7922385-7922468)
chr3 (311-387)||(19653231-19653307)
chr3 (304-388)||(16897048-16897133)
chr3 (304-387)||(37835777-37835860)
chr3 (310-388)||(31644519-31644597)
chr3 (338-387)||(50029066-50029115)
chr3 (308-388)||(30937132-30937212)
chr3 (350-387)||(27874337-27874374)
chr3 (304-388)||(53050541-53050625)
chr3 (333-388)||(19232698-19232753)
chr3 (304-387)||(40969797-40969880)
chr3 (308-362)||(15979203-15979257)
chr3 (309-385)||(11583650-11583726)
[»] scaffold0217 (1 HSPs)
scaffold0217 (272-387)||(8272-8387)
[»] chr5 (11 HSPs)
chr5 (241-406)||(20974187-20974351)
chr5 (311-387)||(10468816-10468892)
chr5 (311-387)||(28639230-28639306)
chr5 (289-385)||(27017477-27017573)
chr5 (311-387)||(26501420-26501497)
chr5 (296-387)||(38707146-38707237)
chr5 (309-387)||(38436647-38436727)
chr5 (304-384)||(3417550-3417630)
chr5 (304-387)||(16422154-16422237)
chr5 (309-383)||(33023571-33023645)
chr5 (345-387)||(40526010-40526052)
[»] scaffold0394 (1 HSPs)
scaffold0394 (304-387)||(5261-5344)
[»] chr7 (12 HSPs)
chr7 (296-387)||(8606909-8607001)
chr7 (311-387)||(21431401-21431477)
chr7 (304-388)||(43109377-43109461)
chr7 (304-388)||(4163622-4163706)
chr7 (311-387)||(32703045-32703121)
chr7 (304-388)||(34205913-34205997)
chr7 (304-388)||(39295846-39295930)
chr7 (325-387)||(5651939-5652001)
chr7 (304-387)||(45459015-45459098)
chr7 (313-378)||(48162936-48163001)
chr7 (177-209)||(26788595-26788627)
chr7 (171-211)||(38106950-38106990)
[»] chr6 (12 HSPs)
chr6 (244-387)||(19617298-19617441)
chr6 (304-388)||(3490313-3490397)
chr6 (304-388)||(31933833-31933917)
chr6 (317-387)||(17714069-17714139)
chr6 (304-388)||(26710816-26710900)
chr6 (311-387)||(33754645-33754721)
chr6 (304-388)||(1309140-1309224)
chr6 (311-387)||(24991498-24991573)
chr6 (304-388)||(16467002-16467086)
chr6 (304-388)||(33146941-33147025)
chr6 (338-383)||(12954385-12954430)
chr6 (171-211)||(1309321-1309361)
[»] scaffold0175 (1 HSPs)
scaffold0175 (298-406)||(19692-19800)


Alignment Details
Target: chr1 (Bit Score: 96; Significance: 6e-47; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 136 - 267
Target Start/End: Original strand, 39495637 - 39495768
Alignment:
Q  136 gtattagagcatgactcagttactatagtacgtatattttgttttttaacaagtcaaaatcagatatattaacaaataattacgcttcatagtagaatga 235  Q
    ||||| ||||||||||||||||||||| |||||||||||| ||||||||||||||||||| | ||||||||||||| ||||| ||||| |||||||||||    
T  39495637 gtatttgagcatgactcagttactatactacgtatattttattttttaacaagtcaaaatgaaatatattaacaaacaattatgcttcttagtagaatga 39495736  T
Q  236 gttctttaagaaacagaacaaaaatacaacaa 267  Q
     |||||||||||||||||||||||||||||||    
T  39495737 attctttaagaaacagaacaaaaatacaacaa 39495768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 241 - 406
Target Start/End: Original strand, 39415716 - 39415880
Alignment:
Q  241 ttaagaaacagaacaaaaatacaacaatcaatccttaaaaattaaaatagaggaaaacaacggtcagtcaatccccaaacaaacaaggggttgctgtcac 340  Q
    ||||||| |||||||||| |||||||  | |||||||||||  |||| || || ||||||||||||| |||| |||||||||| ||||| || ||| |||    
T  39415716 ttaagaagcagaacaaaattacaacatccgatccttaaaaaacaaaa-agtggtaaacaacggtcagccaatacccaaacaaataagggattactgccac 39415814  T
Q  341 cataaatggtaaccaaaaggaaagcatacatttttagctttcaaccatgaaagtgtagtgattttt 406  Q
    || | |||||||||||| |||||||| |||||||||||||||||||||  ||||||||||||||||    
T  39415815 cacatatggtaaccaaagggaaagcaaacatttttagctttcaaccattcaagtgtagtgattttt 39415880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 172 - 387
Target Start/End: Original strand, 50092003 - 50092218
Alignment:
Q  172 ttttgttttttaacaagtcaaaatcagatatattaacaaataattacgcttcatagtagaatgagttctttaagaaacagaacaaaaatacaacaatcaa 271  Q
    |||| ||||||||||||||||||| ||||||||||||||||||||  ||| | ||  | || |||| | | |||||  ||||||||| ||||||| |||     
T  50092003 tttttttttttaacaagtcaaaatgagatatattaacaaataattctgctccctaacaaaaggagtgcgtaaagaaggagaacaaaattacaacattcag 50092102  T
Q  272 tccttaaaaattaaaatagaggaaaacaacggtcagtcaatccccaaacaaacaaggggttgctgtcaccataaatggtaaccaaaaggaaagcatacat 371  Q
    || |||||  | | ||||||| |||||||||||||| |||||||||| |||||||||||||| || ||||| | ||||||| |||| |||||||  |  |    
T  50092103 tctttaaagttcagaatagagaaaaacaacggtcagccaatccccaagcaaacaaggggttgttgccaccacatatggtaatcaaatggaaagctcatgt 50092202  T
Q  372 ttttagctttcaacca 387  Q
    ||||||||||||||||    
T  50092203 ttttagctttcaacca 50092218  T

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Target: chr1; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 318 - 406
Target Start/End: Original strand, 39495764 - 39495852
Alignment:
Q  318 aacaaacaaggggttgctgtcaccataaatggtaaccaaaaggaaagcatacatttttagctttcaaccatgaaagtgtagtgattttt 406  Q
    |||||||||||||||| || ||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||    
T  39495764 aacaaacaaggggttgttgccaccataaatggtaaccaaaatgaaagaatacatttttagctttcaaccataaaagtgtagtgattttt 39495852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 6 - 80
Target Start/End: Original strand, 39495507 - 39495581
Alignment:
Q  6 aggagcagagaagtttgtggaaaaaagacaaaataaaggggggaaaattcatttggaacttacatgcctttcttg 80  Q
    ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||    
T  39495507 aggagtagagaagtttgtggaaaaaagacaaaataaagggggggaaattcatttggaacttacatacctttcttg 39495581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 307 - 406
Target Start/End: Complemental strand, 22560339 - 22560240
Alignment:
Q  307 gtcaatccccaaacaaacaaggggttgctgtcaccataaatggtaaccaaaaggaaagcatacatttttagctttcaaccatgaaagtgtagtgattttt 406  Q
    |||||||||||||||| ||||||||||||| |||| |||||| ||||||||||||||||| |||||||||||||||||| | | ||| | ||||||||||    
T  22560339 gtcaatccccaaacaagcaaggggttgctgccaccgtaaatgataaccaaaaggaaagcaaacatttttagctttcaactaggtaagagaagtgattttt 22560240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 311 - 387
Target Start/End: Original strand, 31458845 - 31458921
Alignment:
Q  311 atccccaaacaaacaaggggttgctgtcaccataaatggtaaccaaaaggaaagcatacatttttagctttcaacca 387  Q
    ||||| |||||||||||||| ||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  31458845 atccctaaacaaacaaggggatgctgccaccataaatgataaccaaaaggaaagcacacatttttagctttcaacca 31458921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 311 - 387
Target Start/End: Complemental strand, 35368481 - 35368405
Alignment:
Q  311 atccccaaacaaacaaggggttgctgtcaccataaatggtaaccaaaaggaaagcatacatttttagctttcaacca 387  Q
    ||||| |||||||||||||| ||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  35368481 atccctaaacaaacaaggggatgctgccaccataaatgataaccaaaaggaaagcacacatttttagctttcaacca 35368405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 243 - 406
Target Start/End: Original strand, 6632560 - 6632723
Alignment:
Q  243 aagaaacagaacaaaaatacaacaatcaatccttaaaaattaaaatagaggaaaacaacggtcagtcaatccccaaacaaacaaggggttgctgtcacca 342  Q
    ||||| |||||||| | |||||||| ||||||||| || | | ||||  |  ||||||||||||  |||||| ||||||||||||||||| ||| |||||    
T  6632560 aagaagcagaacaatattacaacaaccaatccttataagtcagaataatgataaacaacggtcaaccaatcctcaaacaaacaaggggttactgccacca 6632659  T
Q  343 taaatggtaaccaaaaggaaagcatacatttttagctttcaaccatgaaagtgtagtgattttt 406  Q
     | |||||||||| ||||||| |||| |||||||| |||||||||   ||||| ||||||||||    
T  6632660 catatggtaaccagaaggaaatcatatatttttagatttcaaccagctaagtgaagtgattttt 6632723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 311 - 387
Target Start/End: Complemental strand, 36193348 - 36193272
Alignment:
Q  311 atccccaaacaaacaaggggttgctgtcaccataaatggtaaccaaaaggaaagcatacatttttagctttcaacca 387  Q
    ||||| |||||||||||||| ||||| ||||||||||| |||||||||| |||||| ||||||||||||||||||||    
T  36193348 atccctaaacaaacaaggggatgctgccaccataaatgataaccaaaagaaaagcacacatttttagctttcaacca 36193272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 243 - 406
Target Start/End: Original strand, 13133063 - 13133232
Alignment:
Q  243 aagaaacagaacaaaaatacaacaatcaatccttaaaaattaaaatagaggaaaacaacggtcagtcaatccccaaacaaacaaggggttgctg------ 336  Q
    ||||| ||||| |||| ||||||||||||||||||  ||| ||||||| || |||| |||||||| |||||| ||||| ||||||| |||||||          
T  13133063 aagaagcagaataaaattacaacaatcaatccttatgaatcaaaatagtggtaaactacggtcagccaatcctcaaacgaacaaggagttgctgccagta 13133162  T
Q  337 tcaccataaatggtaaccaaaaggaaagcatacatttttagctttcaaccatgaaagtgtagtgattttt 406  Q
     ||||| | |||||||||||||| ||| ||||||||||||||||| || |||| ||| | ||||| ||||    
T  13133163 ccaccacatatggtaaccaaaagcaaatcatacatttttagctttgaatcatgtaagagaagtgactttt 13133232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 311 - 387
Target Start/End: Original strand, 32641461 - 32641537
Alignment:
Q  311 atccccaaacaaacaaggggttgctgtcaccataaatggtaaccaaaaggaaagcatacatttttagctttcaacca 387  Q
    ||||| ||||| | |||||| ||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  32641461 atccctaaacacagaaggggatgctgccaccataaatgataaccaaaaggaaagcacacatttttagctttcaacca 32641537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 304 - 388
Target Start/End: Complemental strand, 10386470 - 10386386
Alignment:
Q  304 tcagtcaatccccaaacaaacaaggggttgctgtcaccataaatggtaaccaaaaggaaagcatacatttttagctttcaaccat 388  Q
    |||| ||||||| |||||| |||||||  |||| | ||||||||| ||||||||||||||||| |||||||| ||||||||||||    
T  10386470 tcagccaatccctaaacaagcaaggggacgctgccgccataaatgataaccaaaaggaaagcacacattttttgctttcaaccat 10386386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 311 - 387
Target Start/End: Original strand, 51128509 - 51128585
Alignment:
Q  311 atccccaaacaaacaaggggttgctgtcaccataaatggtaaccaaaaggaaagcatacatttttagctttcaacca 387  Q
    ||||| |||||||||| ||| ||||| ||||||||||| |||||||||| |||||| |||||||||| |||||||||    
T  51128509 atccctaaacaaacaaagggatgctgccaccataaatgataaccaaaagaaaagcacacatttttagttttcaacca 51128585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 304 - 387
Target Start/End: Complemental strand, 24561631 - 24561548
Alignment:
Q  304 tcagtcaatccccaaacaaacaaggggttgctgtcaccataaatggtaaccaaaaggaaagcatacatttttagctttcaacca 387  Q
    |||||| ||||| |||||| ||||||| |  |  ||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  24561631 tcagtctatccctaaacaagcaaggggattttaccaccataaatgataaccaaaaggaaagcacacatttttagctttcaacca 24561548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 304 - 388
Target Start/End: Complemental strand, 6333188 - 6333104
Alignment:
Q  304 tcagtcaatccccaaacaaacaaggggttgctgtcaccataaatggtaaccaaaaggaaagcatacatttttagctttcaaccat 388  Q
    |||| ||||||||||||||  ||||||  | || ||||| | ||||||||||||||||||||| ||||||||  |||||||||||    
T  6333188 tcagccaatccccaaacaagtaaggggacgttgccaccacatatggtaaccaaaaggaaagcacacatttttttctttcaaccat 6333104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 383
Target Start/End: Complemental strand, 38029860 - 38029786
Alignment:
Q  309 caatccccaaacaaacaaggggttgctgtcaccataaatggtaaccaaaaggaaagcatacatttttagctttca 383  Q
    |||| ||||||||  |||| |||||||| ||||| |||||||||||||||||||| || || ||||| |||||||    
T  38029860 caatgcccaaacatgcaagaggttgctgccaccacaaatggtaaccaaaaggaaaacaaacttttttggctttca 38029786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 389
Target Start/End: Original strand, 22816550 - 22816622
Alignment:
Q  317 aaacaaacaaggggttgctgtcaccataaatggtaaccaaaaggaaagcatacatttttagctttcaaccatg 389  Q
    ||||| ||||| ||||| || ||||| | ||| ||||||||||||||  |||||||||||||||||| |||||    
T  22816550 aaacagacaagaggttgatgccaccacatatgataaccaaaaggaaaatatacatttttagctttcagccatg 22816622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 383
Target Start/End: Complemental strand, 20417679 - 20417613
Alignment:
Q  317 aaacaaacaaggggttgctgtcaccataaatggtaaccaaaaggaaagcatacatttttagctttca 383  Q
    ||||| ||||| ||||| || ||| | |||||||||| ||||||||| || ||||||||||||||||    
T  20417679 aaacagacaagaggttgttgccactacaaatggtaactaaaaggaaaacaaacatttttagctttca 20417613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 83; Significance: 3e-39; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 244 - 406
Target Start/End: Original strand, 12230269 - 12230431
Alignment:
Q  244 agaaacagaacaaaaatacaacaatcaatccttaaaaattaaaatagaggaaaacaacggtcagtcaatccccaaacaaacaaggggttgctgtcaccat 343  Q
    |||| |||||||||| |||||||||||||||||   ||| ||||||| || ||||||||||||  |||||| ||||||||||||| ||||||| |||||     
T  12230269 agaagcagaacaaaattacaacaatcaatccttctgaatcaaaatagtggtaaacaacggtcaaccaatcctcaaacaaacaaggagttgctgccaccac 12230368  T
Q  344 aaatggtaaccaaaaggaaagcatacatttttagctttcaaccatgaaagtgtagtgattttt 406  Q
    | ||||||||||||||||||||| |||||||| ||||||||||| | ||||| ||||||||||    
T  12230369 atatggtaaccaaaaggaaagcaaacatttttcgctttcaaccacgtaagtgaagtgattttt 12230431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 311 - 387
Target Start/End: Complemental strand, 38891915 - 38891839
Alignment:
Q  311 atccccaaacaaacaaggggttgctgtcaccataaatggtaaccaaaaggaaagcatacatttttagctttcaacca 387  Q
    ||||| |||||||||||||| |||||  |||||||||| ||||||| ||||||||| ||||||||||||||||||||    
T  38891915 atccctaaacaaacaaggggatgctgctaccataaatgataaccaagaggaaagcacacatttttagctttcaacca 38891839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 304 - 388
Target Start/End: Original strand, 24732723 - 24732807
Alignment:
Q  304 tcagtcaatccccaaacaaacaaggggttgctgtcaccataaatggtaaccaaaaggaaagcatacatttttagctttcaaccat 388  Q
    |||| ||||| |||||||| |||||||  |||| ||||| | ||||||||||||||||||||| |||||||| ||||||||||||    
T  24732723 tcagccaatctccaaacaagcaaggggacgctgccaccacatatggtaaccaaaaggaaagcacacattttttgctttcaaccat 24732807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 304 - 388
Target Start/End: Complemental strand, 41692317 - 41692233
Alignment:
Q  304 tcagtcaatccccaaacaaacaaggggttgctgtcaccataaatggtaaccaaaaggaaagcatacatttttagctttcaaccat 388  Q
    |||| |||||||||||||  |||||||  |||| ||||| | ||| |||||| |||||||||| |||||||| ||||||||||||    
T  41692317 tcagccaatccccaaacagtcaaggggacgctgccaccacatatgataaccataaggaaagcacacattttttgctttcaaccat 41692233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 309 - 388
Target Start/End: Original strand, 43599077 - 43599156
Alignment:
Q  309 caatccccaaacaaacaaggggttgctgtcaccataaatggtaaccaaaaggaaagcatacatttttagctttcaaccat 388  Q
    ||||||| |||||| |||||||  |||| ||||| ||||| |||| ||||||||| || |||||||| ||||||||||||    
T  43599077 caatccctaaacaagcaaggggacgctgccaccacaaatgataactaaaaggaaaacacacattttttgctttcaaccat 43599156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 304 - 388
Target Start/End: Original strand, 13403668 - 13403749
Alignment:
Q  304 tcagtcaatccccaaacaaacaaggggttgctgtcaccataaatggtaaccaaaaggaaagcatacatttttagctttcaaccat 388  Q
    |||||||||||| |||||| |||||||  |||| |||   ||||| ||| ||||||||||||| |||||||| ||||||||||||    
T  13403668 tcagtcaatccctaaacaagcaaggggacgctgccac---aaatgataatcaaaaggaaagcacacattttttgctttcaaccat 13403749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 319 - 387
Target Start/End: Original strand, 36780636 - 36780704
Alignment:
Q  319 acaaacaaggggttgctgtcaccataaatggtaaccaaaaggaaagcatacatttttagctttcaacca 387  Q
    |||||||| || ||| ||||||||   |||||||||||||| ||| || ||||||||||||||||||||    
T  36780636 acaaacaaaggattgttgtcaccacgtatggtaaccaaaagaaaaacacacatttttagctttcaacca 36780704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 172 - 211
Target Start/End: Original strand, 13403532 - 13403571
Alignment:
Q  172 ttttgttttttaacaagtcaaaatcagatatattaacaaa 211  Q
    |||| ||||||||||||||||||| |||||||||||||||    
T  13403532 tttttttttttaacaagtcaaaatgagatatattaacaaa 13403571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 315 - 383
Target Start/End: Complemental strand, 15045966 - 15045898
Alignment:
Q  315 ccaaacaaacaaggggttgctgtcaccataaatggtaaccaaaaggaaagcatacatttttagctttca 383  Q
    ||||||| | ||| ||||| || ||||| |||||||||| ||||||||| || |||| |||||||||||    
T  15045966 ccaaacagataagaggttgttgccaccacaaatggtaactaaaaggaaaacaaacatgtttagctttca 15045898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 8e-37; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 234 - 376
Target Start/End: Original strand, 25241876 - 25242017
Alignment:
Q  234 gagttctttaagaaacagaacaaaaatacaacaatcaatccttaaaaattaaaatagaggaaaacaacggtcagtcaatccccaaacaaacaaggggttg 333  Q
    |||| ||||||||| |||||||||| |||||||  |||||||||||||| ||||||||| ||||||| |||||| ||||||||||||||||||||| |||    
T  25241876 gagtgctttaagaagcagaacaaaattacaacatccaatccttaaaaatgaaaatagag-aaaacaaaggtcagccaatccccaaacaaacaagggattg 25241974  T
Q  334 ctgtcaccataaatggtaaccaaaaggaaagcatacattttta 376  Q
     || ||||  | |||||||||||||||||||||||||||||||    
T  25241975 ttgccaccgcatatggtaaccaaaaggaaagcatacattttta 25242017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 244 - 406
Target Start/End: Complemental strand, 10462635 - 10462473
Alignment:
Q  244 agaaacagaacaaaaatacaacaatcaatccttaaaaattaaaatagaggaaaacaacggtcagtcaatccccaaacaaacaaggggttgctgtcaccat 343  Q
    |||| ||||||||| || ||||||||| ||||| | | | || | || ||||||||| ||||||||||||||||||||||||| ||||||||| |||||     
T  10462635 agaagcagaacaaagatccaacaatcagtccttgagagtcaagaaagtggaaaacaaaggtcagtcaatccccaaacaaacaaagggttgctgccaccac 10462536  T
Q  344 aaatggtaaccaaaaggaaagcatacatttttagctttcaaccatgaaagtgtagtgattttt 406  Q
      |||||||||||||| |||||| | |||||| ||||| ||||| || || | ||||||||||    
T  10462535 gtatggtaaccaaaagaaaagcaaatatttttcgcttttaaccacgatagagaagtgattttt 10462473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 311 - 387
Target Start/End: Original strand, 7446350 - 7446426
Alignment:
Q  311 atccccaaacaaacaaggggttgctgtcaccataaatggtaaccaaaaggaaagcatacatttttagctttcaacca 387  Q
    ||||| |||||||||||||| ||||| ||||||||||| ||||||||||||||||| | ||||||||||||||||||    
T  7446350 atccctaaacaaacaaggggatgctgccaccataaatgataaccaaaaggaaagcacatatttttagctttcaacca 7446426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 311 - 387
Target Start/End: Complemental strand, 10009739 - 10009663
Alignment:
Q  311 atccccaaacaaacaaggggttgctgtcaccataaatggtaaccaaaaggaaagcatacatttttagctttcaacca 387  Q
    ||||| |||||||||||||| ||||| ||||||||||| |||||||||||||| || ||||||||||||||||||||    
T  10009739 atccctaaacaaacaaggggatgctgccaccataaatgataaccaaaaggaaaacacacatttttagctttcaacca 10009663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 304 - 383
Target Start/End: Complemental strand, 32045600 - 32045521
Alignment:
Q  304 tcagtcaatccccaaacaaacaaggggttgctgtcaccataaatggtaaccaaaaggaaagcatacatttttagctttca 383  Q
    |||| ||||||| |||||||||||||| ||||| |||||| |||| ||||||||||||||||| ||||||||||||||||    
T  32045600 tcagccaatccctaaacaaacaaggggatgctgccaccatgaatgataaccaaaaggaaagcacacatttttagctttca 32045521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 311 - 387
Target Start/End: Complemental strand, 26017745 - 26017669
Alignment:
Q  311 atccccaaacaaacaaggggttgctgtcaccataaatggtaaccaaaaggaaagcatacatttttagctttcaacca 387  Q
    ||||| |||||||||||||| ||||| ||||||||||| |||||||||||||| || |||||||| |||||||||||    
T  26017745 atccctaaacaaacaaggggatgctgccaccataaatgataaccaaaaggaaaacacacatttttggctttcaacca 26017669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 304 - 385
Target Start/End: Complemental strand, 38948434 - 38948353
Alignment:
Q  304 tcagtcaatccccaaacaaacaaggggttgctgtcaccataaatggtaaccaaaaggaaagcatacatttttagctttcaac 385  Q
    ||||||||| || |||||| ||||||| ||||| ||||| ||||| ||||||||||||||||| |||||||| |||||||||    
T  38948434 tcagtcaattcctaaacaagcaaggggatgctgccaccacaaatgataaccaaaaggaaagcacacattttttgctttcaac 38948353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 308 - 388
Target Start/End: Complemental strand, 25459577 - 25459497
Alignment:
Q  308 tcaatccccaaacaaacaaggggttgctgtcaccataaatggtaaccaaaaggaaagcatacatttttagctttcaaccat 388  Q
    ||||||||||||||| ||||||| | ||| ||||| | ||| ||| ||||||||||||||||||||| |||||||||||||    
T  25459577 tcaatccccaaacaagcaagggggttctgccaccacatatgataatcaaaaggaaagcatacattttaagctttcaaccat 25459497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 309 - 388
Target Start/End: Complemental strand, 19310139 - 19310060
Alignment:
Q  309 caatccccaaacaaacaaggggttgctgtcaccataaatggtaaccaaaaggaaagcatacatttttagctttcaaccat 388  Q
    ||||||||||||||  ||||||  |||| ||||| | ||||||||||||||||||||| |||||||| ||||||||||||    
T  19310139 caatccccaaacaagtaaggggacgctgccaccacacatggtaaccaaaaggaaagcacacattttttgctttcaaccat 19310060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 310 - 388
Target Start/End: Complemental strand, 5592413 - 5592335
Alignment:
Q  310 aatccccaaacaaacaaggggttgctgtcaccataaatggtaaccaaaaggaaagcatacatttttagctttcaaccat 388  Q
    |||| |||||||||||||  ||||||| ||||| ||||||||  |||| ||||| || |||||||||||||||||||||    
T  5592413 aatctccaaacaaacaagaagttgctgccaccacaaatggtagtcaaagggaaatcacacatttttagctttcaaccat 5592335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 310 - 388
Target Start/End: Original strand, 48125957 - 48126035
Alignment:
Q  310 aatccccaaacaaacaaggggttgctgtcaccataaatggtaaccaaaaggaaagcatacatttttagctttcaaccat 388  Q
    |||| |||||||||||||  ||||||| ||||| ||||||||  |||| ||||| || |||||||||||||||||||||    
T  48125957 aatctccaaacaaacaagaagttgctgccaccacaaatggtagtcaaagggaaatcacacatttttagctttcaaccat 48126035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 304 - 388
Target Start/End: Original strand, 2398404 - 2398488
Alignment:
Q  304 tcagtcaatccccaaacaaacaaggggttgctgtcaccataaatggtaaccaaaaggaaagcatacatttttagctttcaaccat 388  Q
    |||||| ||||| ||||| |||| ||| ||||  ||||||||||| |||  ||||||||| |||||||||||| |||||||||||    
T  2398404 tcagtctatcccaaaacagacaaagggatgctaccaccataaatgataattaaaaggaaaacatacatttttaactttcaaccat 2398488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 309 - 381
Target Start/End: Complemental strand, 8933282 - 8933210
Alignment:
Q  309 caatccccaaacaaacaaggggttgctgtcaccataaatggtaaccaaaaggaaagcatacatttttagcttt 381  Q
    ||||||||||||||| |||||| ||||| ||||| | ||| ||||||||||||||||| | |||||| |||||    
T  8933282 caatccccaaacaaataaggggatgctgccaccacatatgataaccaaaaggaaagcacatattttttgcttt 8933210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 309 - 393
Target Start/End: Original strand, 14528336 - 14528420
Alignment:
Q  309 caatccccaaacaaacaaggggttgctgtcaccataaatggtaaccaaaaggaaagcatacatttttagctttcaaccatgaaag 393  Q
    |||||| ||||||| ||| ||| ||||| | ||| | ||||||||||||||| ||||| |||||||||| |||||||||| ||||    
T  14528336 caatcctcaaacaagcaaagggatgctgccgccacatatggtaaccaaaagggaagcacacatttttagatttcaaccatcaaag 14528420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 304 - 388
Target Start/End: Complemental strand, 53679670 - 53679586
Alignment:
Q  304 tcagtcaatccccaaacaaacaaggggttgctgtcaccataaatggtaaccaaaaggaaagcatacatttttagctttcaaccat 388  Q
    |||| ||||||| |||||| |||| ||  |||| ||||| ||||| || ||||||| ||||||||||||||| ||||||||||||    
T  53679670 tcagccaatccctaaacaagcaagtggacgctgccaccacaaatgatatccaaaagaaaagcatacattttttgctttcaaccat 53679586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 346 - 388
Target Start/End: Complemental strand, 43470320 - 43470278
Alignment:
Q  346 atggtaaccaaaaggaaagcatacatttttagctttcaaccat 388  Q
    ||||||||||||||||||||| |||||||| ||||||||||||    
T  43470320 atggtaaccaaaaggaaagcacacattttttgctttcaaccat 43470278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 304 - 387
Target Start/End: Original strand, 19836718 - 19836801
Alignment:
Q  304 tcagtcaatccccaaacaaacaaggggttgctgtcaccataaatggtaaccaaaaggaaagcatacatttttagctttcaacca 387  Q
    |||| |||||||||||||| ||| |||  | || ||||| | ||| |||||||| |||||||| |||||||| |||||||||||    
T  19836718 tcagccaatccccaaacaagcaaagggacgttgccaccacatatgataaccaaatggaaagcacacattttttgctttcaacca 19836801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 388
Target Start/End: Original strand, 36188710 - 36188748
Alignment:
Q  350 taaccaaaaggaaagcatacatttttagctttcaaccat 388  Q
    |||||||||||||| || |||||||||||||||||||||    
T  36188710 taaccaaaaggaaaacaaacatttttagctttcaaccat 36188748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 172 - 210
Target Start/End: Complemental strand, 38948570 - 38948532
Alignment:
Q  172 ttttgttttttaacaagtcaaaatcagatatattaacaa 210  Q
    |||| ||||||||||||||||||| ||||||||||||||    
T  38948570 tttttttttttaacaagtcaaaatgagatatattaacaa 38948532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 383
Target Start/End: Original strand, 42766184 - 42766258
Alignment:
Q  309 caatccccaaacaaacaaggggttgctgtcaccataaatggtaaccaaaaggaaagcatacatttttagctttca 383  Q
    |||| |||||||  |||||  ||||||| ||||| |||||||||||||||| ||| || | ||||||||||||||    
T  42766184 caatgcccaaactgacaagaagttgctgccaccacaaatggtaaccaaaagtaaaacaaatatttttagctttca 42766258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 319 - 387
Target Start/End: Original strand, 13840806 - 13840874
Alignment:
Q  319 acaaacaaggggttgctgtcaccataaatggtaaccaaaaggaaagcatacatttttagctttcaacca 387  Q
    ||||||| |||||||||| ||||| | |||  || ||||||||||||| |  |||||||||||||||||    
T  13840806 acaaacatggggttgctgccaccacatatgagaatcaaaaggaaagcacatgtttttagctttcaacca 13840874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 383
Target Start/End: Complemental strand, 20248830 - 20248770
Alignment:
Q  323 acaaggggttgctgtcaccataaatggtaaccaaaaggaaagcatacatttttagctttca 383  Q
    ||||| ||||| || ||||| | ||||||||||||||||||  | ||||||||||||||||    
T  20248830 acaagaggttgttgccaccacatatggtaaccaaaaggaaaatagacatttttagctttca 20248770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 381
Target Start/End: Original strand, 42674941 - 42674993
Alignment:
Q  329 ggttgctgtcaccataaatggtaaccaaaaggaaagcatacatttttagcttt 381  Q
    |||||||| ||||| | ||| |||||||||||||| ||| |||||||||||||    
T  42674941 ggttgctgccaccacatatgataaccaaaaggaaatcattcatttttagcttt 42674993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 252 - 406
Target Start/End: Original strand, 34358744 - 34358898
Alignment:
Q  252 aacaaaaatacaacaatcaatccttaaaaattaaaatagaggaaaacaacggtcagtcaatccccaaacaaacaaggggttgctgtcaccataaatggta 351  Q
    ||||||| ||||||||||||||||||  ||| ||||||| || ||||| | || |||||||||||||||||| ||||||||| || ||||| | ||| ||    
T  34358744 aacaaaattacaacaatcaatccttatgaatcaaaatagtggtaaacatcagtaagtcaatccccaaacaaaaaaggggttgatgccaccacatatgata 34358843  T
Q  352 accaaaaggaaagcatacatttttagctttcaaccatgaaagtgtagtgattttt 406  Q
    |||||||||||||| |||||||||||||||||| || | ||||| ||||||||||    
T  34358844 accaaaaggaaagcttacatttttagctttcaatcacgtaagtgaagtgattttt 34358898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 274 - 406
Target Start/End: Original strand, 17930648 - 17930780
Alignment:
Q  274 cttaaaaattaaaatagaggaaaacaacggtcagtcaatccccaaacaaacaaggggttgctgtcaccataaatggtaaccaaaaggaaagcatacattt 373  Q
    ||||||||| |||| ||| | ||||||||||||  || ||  |||||| |||||||||||||| ||||| | | |||||||||| |||||||| ||||||    
T  17930648 cttaaaaatcaaaaaagatggaaacaacggtcaaccactcttcaaacagacaaggggttgctgccaccacataaggtaaccaaagggaaagcaaacattt 17930747  T
Q  374 ttagctttcaaccatgaaagtgtagtgattttt 406  Q
    |||||||||||||||||||| ||||| ||||||    
T  17930748 ttagctttcaaccatgaaagagtagtcattttt 17930780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 304 - 388
Target Start/End: Complemental strand, 3153795 - 3153711
Alignment:
Q  304 tcagtcaatccccaaacaaacaaggggttgctgtcaccataaatggtaaccaaaaggaaagcatacatttttagctttcaaccat 388  Q
    |||||||||||| ||||||||||||||  |||| ||||||||||| ||||||||||||||||| |||||||| ||||||||||||    
T  3153795 tcagtcaatccctaaacaaacaaggggacgctgccaccataaatgataaccaaaaggaaagcacacattttttgctttcaaccat 3153711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 304 - 387
Target Start/End: Original strand, 34385384 - 34385467
Alignment:
Q  304 tcagtcaatccccaaacaaacaaggggttgctgtcaccataaatggtaaccaaaaggaaagcatacatttttagctttcaacca 387  Q
    |||||||||||| |||||||||||||| ||||| |||||||||| ||||||||||||||| || ||||||||| ||||||||||    
T  34385384 tcagtcaatccctaaacaaacaaggggatgctgccaccataaatagtaaccaaaaggaaaacacacatttttatctttcaacca 34385467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 311 - 387
Target Start/End: Original strand, 6469058 - 6469134
Alignment:
Q  311 atccccaaacaaacaaggggttgctgtcaccataaatggtaaccaaaaggaaagcatacatttttagctttcaacca 387  Q
    ||||| ||| |||||||||| ||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  6469058 atccctaaataaacaaggggatgctgccaccataaatgataaccaaaaggaaagcacacatttttagctttcaacca 6469134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 299 - 387
Target Start/End: Original strand, 23289919 - 23290007
Alignment:
Q  299 aacggtcagtcaatccccaaacaaacaaggggttgctgtcaccataaatggtaaccaaaaggaaagcatacatttttagctttcaacca 387  Q
    ||||||||| ||||||||||||||||||||||||| || ||||| |  ||||||||||||||||| || ||||| ||||||||||||||    
T  23289919 aacggtcagccaatccccaaacaaacaaggggttgttgccaccacatgtggtaaccaaaaggaaatcaaacattcttagctttcaacca 23290007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 309 - 383
Target Start/End: Complemental strand, 16203103 - 16203029
Alignment:
Q  309 caatccccaaacaaacaaggggttgctgtcaccataaatggtaaccaaaaggaaagcatacatttttagctttca 383  Q
    |||| |||||||| ||||| |||||||||||||| | ||| |||||||||||||| |||||||||||||||||||    
T  16203103 caatgcccaaacagacaagaggttgctgtcaccacatatgataaccaaaaggaaaacatacatttttagctttca 16203029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 311 - 387
Target Start/End: Complemental strand, 536384 - 536308
Alignment:
Q  311 atccccaaacaaacaaggggttgctgtcaccataaatggtaaccaaaaggaaagcatacatttttagctttcaacca 387  Q
    ||||| |||||||||||||| ||||| ||||||||||| || ||||||||||| || ||||| ||||||||||||||    
T  536384 atccctaaacaaacaaggggatgctgccaccataaatgatagccaaaaggaaatcacacattattagctttcaacca 536308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 304 - 388
Target Start/End: Original strand, 10059925 - 10060009
Alignment:
Q  304 tcagtcaatccccaaacaaacaaggggttgctgtcaccataaatggtaaccaaaaggaaagcatacatttttagctttcaaccat 388  Q
    |||| ||||||| |||||| |||||||  |||| | ||||||||| ||||||||||||||||| |||||||| ||||||||||||    
T  10059925 tcagccaatccctaaacaagcaaggggacgctgccgccataaatgataaccaaaaggaaagcacacattttttgctttcaaccat 10060009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 285 - 406
Target Start/End: Original strand, 32170891 - 32171016
Alignment:
Q  285 aaatagaggaaaacaacggtcagtcaatccccaaacaaacaaggggttgctgtcaccataaatggtaaccaaaaggaaagcatacattt----ttagctt 380  Q
    ||||||||  ||||||||| ||  |||||| ||||||||||||||||||||||||||| | ||   ||||||||||||| ||||||||     |||||||    
T  32170891 aaatagagataaacaacgggcaaccaatcctcaaacaaacaaggggttgctgtcaccacatataagaaccaaaaggaaaacatacattacttcttagctt 32170990  T
Q  381 tcaaccatgaaagtgtagtgattttt 406  Q
    ||| ||| ||||||||||| ||||||    
T  32170991 tcagccacgaaagtgtagtaattttt 32171016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 304 - 384
Target Start/End: Complemental strand, 39768692 - 39768612
Alignment:
Q  304 tcagtcaatccccaaacaaacaaggggttgctgtcaccataaatggtaaccaaaaggaaagcatacatttttagctttcaa 384  Q
    |||||||||||||||||| ||||| || ||||| ||||| | ||| |||| |||||||||||| |||||||||||||||||    
T  39768692 tcagtcaatccccaaacagacaagaggatgctgccaccacatatgataactaaaaggaaagcaaacatttttagctttcaa 39768612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 304 - 388
Target Start/End: Original strand, 79358 - 79442
Alignment:
Q  304 tcagtcaatccccaaacaaacaaggggttgctgtcaccataaatggtaaccaaaaggaaagcatacatttttagctttcaaccat 388  Q
    |||| ||||||| |||||| |||||||  |||| ||||| ||||| ||||||||||||||||| |||||||| ||||| ||||||    
T  79358 tcagccaatccctaaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaagcacacattttttgcttttaaccat 79442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 304 - 388
Target Start/End: Original strand, 44939813 - 44939897
Alignment:
Q  304 tcagtcaatccccaaacaaacaaggggttgctgtcaccataaatggtaaccaaaaggaaagcatacatttttagctttcaaccat 388  Q
    |||| ||||||| |||| | ||||||| ||||| ||||| ||||| ||| ||||||||||||| |||||||| ||||||||||||    
T  44939813 tcagccaatccctaaaccagcaaggggatgctgccaccacaaatgataatcaaaaggaaagcacacattttttgctttcaaccat 44939897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 311 - 359
Target Start/End: Complemental strand, 30255688 - 30255640
Alignment:
Q  311 atccccaaacaaacaaggggttgctgtcaccataaatggtaaccaaaag 359  Q
    |||||||||||||||||||||||||| ||||| | ||||||||||||||    
T  30255688 atccccaaacaaacaaggggttgctgccaccacatatggtaaccaaaag 30255640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 304 - 375
Target Start/End: Original strand, 6432714 - 6432785
Alignment:
Q  304 tcagtcaatccccaaacaaacaaggggttgctgtcaccataaatggtaaccaaaaggaaagcatacattttt 375  Q
    |||| ||||||| |||||| |||||||  |||| ||||| ||||| ||||||||||||||||| ||||||||    
T  6432714 tcagccaatccctaaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaagcacacattttt 6432785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 387
Target Start/End: Original strand, 14163981 - 14164059
Alignment:
Q  309 caatccccaaacaaacaaggggttgctgtcaccataaatggtaaccaaaaggaaagcatacatttttagctttcaacca 387  Q
    |||||||||||||  ||||||| | ||| ||||| | ||| |||||||| |||||||| |||||||| |||||||||||    
T  14163981 caatccccaaacatgcaaggggattctgccaccacatatgataaccaaagggaaagcacacattttttgctttcaacca 14164059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 304 - 388
Target Start/End: Original strand, 1222553 - 1222637
Alignment:
Q  304 tcagtcaatccccaaacaaacaaggggttgctgtcaccataaatggtaaccaaaaggaaagcatacatttttagctttcaaccat 388  Q
    |||| ||||||||||||||  ||||||  |||| ||||| | |||||||||||||| ||| || ||||||||  |||||||||||    
T  1222553 tcagccaatccccaaacaagtaaggggacgctgccaccacatatggtaaccaaaagaaaaacacacattttttactttcaaccat 1222637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 304 - 376
Target Start/End: Complemental strand, 23390614 - 23390542
Alignment:
Q  304 tcagtcaatccccaaacaaacaaggggttgctgtcaccataaatggtaaccaaaaggaaagcatacattttta 376  Q
    |||||| ||||||||||| |||||||| ||||| ||||||||||  |||||||| || || || |||||||||    
T  23390614 tcagtctatccccaaacagacaaggggatgctgccaccataaataataaccaaatggcaatcacacattttta 23390542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 383
Target Start/End: Original strand, 17926980 - 17927054
Alignment:
Q  309 caatccccaaacaaacaaggggttgctgtcaccataaatggtaaccaaaaggaaagcatacatttttagctttca 383  Q
    |||| |||||||| ||||| |||||||| ||||| | |||||| | |||||||||  | ||||||||||||||||    
T  17926980 caatgcccaaacagacaagaggttgctgccaccacatatggtacctaaaaggaaaatacacatttttagctttca 17927054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 363
Target Start/End: Original strand, 32598785 - 32598834
Alignment:
Q  314 cccaaacaaacaaggggttgctgtcaccataaatggtaaccaaaaggaaa 363  Q
    |||||||||  |||||||||||| ||||| ||||| ||||||||||||||    
T  32598785 cccaaacaagtaaggggttgctgccaccacaaatgataaccaaaaggaaa 32598834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 177 - 387
Target Start/End: Complemental strand, 14609107 - 14608898
Alignment:
Q  177 ttttttaacaagtcaaaatcagatatattaacaaataattac--gcttcatagtagaatgagttctttaagaaacagaacaaaaatacaacaatcaatcc 274  Q
    ||||||||||||||||||| ||||||||||||||| ||  |   ||| ||||| | || |||  | | ||||| |||||||||| ||||||| ||| |||    
T  14609107 ttttttaacaagtcaaaatgagatatattaacaaaaaaaaatctgctccatagcacaaggagggcataaagaagcagaacaaaattacaacattcagtcc 14609008  T
Q  275 ttaaaaattaaaatagaggaaaacaacggtcagtcaatccccaaacaaacaaggggttgctgtcaccataaatggtaaccaaaaggaaagcatacatttt 374  Q
    |||||  || | |||||| |||||||||||||| ||||||| ||||||||||||||||| || ||||| | |||||||||||| ||||||| ||||||||    
T  14609007 ttaaag-ttcagatagagaaaaacaacggtcagccaatccc-aaacaaacaaggggttgttgccaccacatatggtaaccaaatggaaagc-tacatttt 14608911  T
Q  375 tagctttcaacca 387  Q
    |||||||||||||    
T  14608910 tagctttcaacca 14608898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 284 - 406
Target Start/End: Complemental strand, 37166394 - 37166272
Alignment:
Q  284 aaaatagaggaaaacaacggtcagtcaatccccaaacaaacaaggggttgctgtcaccataaatggtaaccaaaaggaaagcatacatttttagctttca 383  Q
    |||||||||  ||||||| |||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||| || || ||||||| |||||    
T  37166394 aaaatagagataaacaactgtcagtcaatccccaaacaaacaaggggttgctgccaccacatatggtaaccaaaaggaaaacacacgtttttagttttca 37166295  T
Q  384 accatgaaagtgtagtgattttt 406  Q
    |||| |  |||| ||||||||||    
T  37166294 accacgttagtgaagtgattttt 37166272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 303 - 387
Target Start/End: Complemental strand, 26376739 - 26376655
Alignment:
Q  303 gtcagtcaatccccaaacaaacaaggggttgctgtcaccataaatggtaaccaaaaggaaagcatacatttttagctttcaacca 387  Q
    ||||| ||||||||||||||||||||||||| || ||||| | ||||||||||||||||||||| ||||| ||||||||||||||    
T  26376739 gtcagccaatccccaaacaaacaaggggttgttgccaccacatatggtaaccaaaaggaaagcaaacattcttagctttcaacca 26376655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 311 - 387
Target Start/End: Complemental strand, 15372431 - 15372355
Alignment:
Q  311 atccccaaacaaacaaggggttgctgtcaccataaatggtaaccaaaaggaaagcatacatttttagctttcaacca 387  Q
    ||||| |||||||||| ||| ||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  15372431 atccctaaacaaacaaagggatgctgccaccataaatgataaccaaaaggaaagcacacatttttagctttcaacca 15372355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 249 - 406
Target Start/End: Complemental strand, 8845782 - 8845627
Alignment:
Q  249 cagaacaaaaatacaacaatcaatccttaaaaattaaaatagaggaaaacaacggtcagtcaatccccaaacaaacaaggggttgctgtcaccataaatg 348  Q
    |||||||||| ||||| || ||||||||||   | | ||||||||  ||||| |||||||||||||||||||| ||||| |||||| | ||||| | |||    
T  8845782 cagaacaaaattacaaaaaccaatccttaagt-tcataatagaggtgaacaatggtcagtcaatccccaaacacacaagaggttgcagccaccacatatg 8845684  T
Q  349 gtaaccaaaaggaaagcatacatttttagctttcaaccatgaaagtgtagtgattttt 406  Q
    || | |||||||||| || |||||||||||||||||||| |  |||| ||||||||||    
T  8845683 gt-atcaaaaggaaaacaaacatttttagctttcaaccacgctagtgaagtgattttt 8845627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 311 - 387
Target Start/End: Complemental strand, 25617639 - 25617563
Alignment:
Q  311 atccccaaacaaacaaggggttgctgtcaccataaatggtaaccaaaaggaaagcatacatttttagctttcaacca 387  Q
    ||||| |||||||||| ||| ||||| ||||||||||| |||||||||| |||||| ||||||||||||||||||||    
T  25617639 atccctaaacaaacaaagggatgctgccaccataaatgataaccaaaagaaaagcacacatttttagctttcaacca 25617563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 311 - 387
Target Start/End: Original strand, 33980608 - 33980683
Alignment:
Q  311 atccccaaacaaacaaggggttgctgtcaccataaatggtaaccaaaaggaaagcatacatttttagctttcaacca 387  Q
    ||||| |||||||||||||| ||||| ||||||||||| |||| |||||||||||| ||||||||||||||||||||    
T  33980608 atccctaaacaaacaaggggatgctgccaccataaatgataac-aaaaggaaagcacacatttttagctttcaacca 33980683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 304 - 387
Target Start/End: Complemental strand, 7922468 - 7922385
Alignment:
Q  304 tcagtcaatccccaaacaaacaaggggttgctgtcaccataaatggtaaccaaaaggaaagcatacatttttagctttcaacca 387  Q
    |||| ||||||||||||| |||||||| || || ||||||||||| ||||||||||||||||| |||||||||| ||| |||||    
T  7922468 tcagccaatccccaaacagacaaggggatgttgccaccataaatgataaccaaaaggaaagcacacatttttagtttttaacca 7922385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 311 - 387
Target Start/End: Complemental strand, 19653307 - 19653231
Alignment:
Q  311 atccccaaacaaacaaggggttgctgtcaccataaatggtaaccaaaaggaaagcatacatttttagctttcaacca 387  Q
    ||||| |||||| ||||||| |  || ||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  19653307 atccctaaacaagcaaggggattttgccaccataaatgataaccaaaaggaaagcacacatttttagctttcaacca 19653231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 304 - 388
Target Start/End: Complemental strand, 16897133 - 16897048
Alignment:
Q  304 tcagtcaatccccaaacaaacaaggggttgctgtcaccataaatggtaaccaaaaggaaagcataca-tttttagctttcaaccat 388  Q
    |||||||||||| |||||| |||||||  |||| ||||| ||||| ||||||||||||||||| ||| ||||| ||||||||||||    
T  16897133 tcagtcaatccctaaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaagcacacatttttttgctttcaaccat 16897048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 304 - 387
Target Start/End: Complemental strand, 37835860 - 37835777
Alignment:
Q  304 tcagtcaatccccaaacaaacaaggggttgctgtcaccataaatggtaaccaaaaggaaagcatacatttttagctttcaacca 387  Q
    |||||||||| |||||||||||||||| || || ||||| | ||| | ||||||| |||| |||| ||||||||||||||||||    
T  37835860 tcagtcaatctccaaacaaacaaggggatgttgccaccacatatgatgaccaaaaagaaaacatatatttttagctttcaacca 37835777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 310 - 388
Target Start/End: Original strand, 31644519 - 31644597
Alignment:
Q  310 aatccccaaacaaacaaggggttgctgtcaccataaatggtaaccaaaaggaaagcatacatttttagctttcaaccat 388  Q
    |||||| ||||||||||||||  |||| ||||| ||||| |||||||||||||| || ||||||||  |||||||||||    
T  31644519 aatccctaaacaaacaaggggacgctgccaccacaaatgataaccaaaaggaaaacacacattttttactttcaaccat 31644597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 338 - 387
Target Start/End: Original strand, 50029066 - 50029115
Alignment:
Q  338 caccataaatggtaaccaaaaggaaagcatacatttttagctttcaacca 387  Q
    ||||||||||| ||||||||||||||||| ||||||||| ||||||||||    
T  50029066 caccataaatgataaccaaaaggaaagcacacatttttaactttcaacca 50029115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 308 - 388
Target Start/End: Complemental strand, 30937212 - 30937132
Alignment:
Q  308 tcaatccccaaacaaacaaggggttgctgtcaccataaatggtaaccaaaaggaaagcatacatttttagctttcaaccat 388  Q
    |||||||| |||||| |||||||  |||| ||||| ||||| |||||||||| ||| || |||||||| ||||||||||||    
T  30937212 tcaatccctaaacaagcaaggggacgctgccaccacaaatgataaccaaaagaaaatcacacattttttgctttcaaccat 30937132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 350 - 387
Target Start/End: Original strand, 27874337 - 27874374
Alignment:
Q  350 taaccaaaaggaaagcatacatttttagctttcaacca 387  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  27874337 taaccaaaaggaaagcacacatttttagctttcaacca 27874374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 304 - 388
Target Start/End: Original strand, 53050541 - 53050625
Alignment:
Q  304 tcagtcaatccccaaacaaacaaggggttgctgtcaccataaatggtaaccaaaaggaaagcatacatttttagctttcaaccat 388  Q
    |||| |||||||||||||| ||| ||| || || ||||||| ||| |||||||| | ||| || |||||||| ||||||||||||    
T  53050541 tcagccaatccccaaacaagcaaagggatgttgccaccatatatgataaccaaatgaaaaacacacattttttgctttcaaccat 53050625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 333 - 388
Target Start/End: Original strand, 19232698 - 19232753
Alignment:
Q  333 gctgtcaccataaatggtaaccaaaaggaaagcatacatttttagctttcaaccat 388  Q
    |||| ||||| ||||| || |||||||||||||| |||||||| ||||||||||||    
T  19232698 gctgccaccacaaatgatatccaaaaggaaagcacacattttttgctttcaaccat 19232753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 304 - 387
Target Start/End: Original strand, 40969797 - 40969880
Alignment:
Q  304 tcagtcaatccccaaacaaacaaggggttgctgtcaccataaatggtaaccaaaaggaaagcatacatttttagctttcaacca 387  Q
    |||| |||||||||||||| ||| |||  | || ||||| | ||| |||||||| |||||||| |||||||| |||||||||||    
T  40969797 tcagccaatccccaaacaagcaaagggacgttgccaccacatatgataaccaaatggaaagcacacattttttgctttcaacca 40969880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 308 - 362
Target Start/End: Original strand, 15979203 - 15979257
Alignment:
Q  308 tcaatccccaaacaaacaaggggttgctgtcaccataaatggtaaccaaaaggaa 362  Q
    |||||| |||||||||||||||| ||||| ||| ||||||  |||||||||||||    
T  15979203 tcaatctccaaacaaacaaggggatgctgccactataaatcataaccaaaaggaa 15979257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 385
Target Start/End: Original strand, 11583650 - 11583726
Alignment:
Q  309 caatccccaaacaaacaaggggttgctgtcaccataaatggtaaccaaaaggaaagcatacatttttagctttcaac 385  Q
    ||||||| |||||| ||||| |  |||| ||||| | |||||||||||| ||||| || |||||||| |||||||||    
T  11583650 caatcccgaaacaagcaaggagacgctgccaccacatatggtaaccaaatggaaaacacacattttttgctttcaac 11583726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0217 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 272 - 387
Target Start/End: Complemental strand, 8387 - 8272
Alignment:
Q  272 tccttaaaaattaaaatagaggaaaacaacggtcagtcaatccccaaacaaacaaggggttgctgtcaccataaatggtaaccaaaaggaaagcatacat 371  Q
    |||||||||||  ||| |||| |||||||||||||| |||||||||||||| | |||||| |||| ||||| | ||||||||||||||||||||| ||||    
T  8387 tccttaaaaatctaaaaagagaaaaacaacggtcagccaatccccaaacaatctaggggtcgctgccaccacatatggtaaccaaaaggaaagcaaacat 8288  T
Q  372 ttttagctttcaacca 387  Q
    ||||||||||||||||    
T  8287 ttttagctttcaacca 8272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 5e-29; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 241 - 406
Target Start/End: Complemental strand, 20974351 - 20974187
Alignment:
Q  241 ttaagaaacagaacaaaaatacaacaatcaatccttaaaaattaaaatagaggaaaacaacggtcagtcaatccccaaacaaacaaggggttgctgtcac 340  Q
    ||||||| |||||||||| |||| || || || ||||||||  |||| ||||| ||||||||| |||  |||||||||||||||||||| ||| || |||    
T  20974351 ttaagaagcagaacaaaattacaccattcgattcttaaaaaccaaaaaagagggaaacaacggccagctaatccccaaacaaacaaggg-ttgttgccac 20974253  T
Q  341 cataaatggtaaccaaaaggaaagcatacatttttagctttcaaccatgaaagtgtagtgattttt 406  Q
    || | |||||||| ||| ||||||||| |||||||| |||||||||||||||| || |||||||||    
T  20974252 cacatatggtaacaaaagggaaagcatgcatttttaactttcaaccatgaaagagtggtgattttt 20974187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 311 - 387
Target Start/End: Original strand, 10468816 - 10468892
Alignment:
Q  311 atccccaaacaaacaaggggttgctgtcaccataaatggtaaccaaaaggaaagcatacatttttagctttcaacca 387  Q
    ||||| |||||||||||||| ||||  ||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  10468816 atccctaaacaaacaaggggatgcttccaccataaatgataaccaaaaggaaagcacacatttttagctttcaacca 10468892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 311 - 387
Target Start/End: Complemental strand, 28639306 - 28639230
Alignment:
Q  311 atccccaaacaaacaaggggttgctgtcaccataaatggtaaccaaaaggaaagcatacatttttagctttcaacca 387  Q
    ||||| |||||||||||||| ||||| ||||||||||| ||||||||||||||||| |||||||| |||||||||||    
T  28639306 atccctaaacaaacaaggggatgctgccaccataaatgataaccaaaaggaaagcacacatttttggctttcaacca 28639230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 289 - 385
Target Start/End: Complemental strand, 27017573 - 27017477
Alignment:
Q  289 agaggaaaacaacggtcagtcaatccccaaacaaacaaggggttgctgtcaccataaatggtaaccaaaaggaaagcatacatttttagctttcaac 385  Q
    |||| |||||||||||||| |||||| ||||||||| ||||||| ||| ||||| | |||||||||||||||||| || ||||||||| ||| ||||    
T  27017573 agagaaaaacaacggtcagacaatccgcaaacaaactaggggttactgccaccacatatggtaaccaaaaggaaaacaaacatttttaacttgcaac 27017477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 311 - 387
Target Start/End: Original strand, 26501420 - 26501497
Alignment:
Q  311 atccccaaacaaacaaggggt-tgctgtcaccataaatggtaaccaaaaggaaagcatacatttttagctttcaacca 387  Q
    ||||| ||||||||||||||  ||||| ||||||||||| |||||||||||| |||| ||||||||||||||||||||    
T  26501420 atccctaaacaaacaagggggatgctgccaccataaatgataaccaaaaggagagcacacatttttagctttcaacca 26501497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 296 - 387
Target Start/End: Original strand, 38707146 - 38707237
Alignment:
Q  296 aacaacggtcagtcaatccccaaacaaacaaggggttgctgtcaccataaatggtaaccaaaaggaaagcatacatttttagctttcaacca 387  Q
    |||| ||||||  |||||||||||||||| || | ||| || ||||| | ||| ||||||||||||||||| |||||| |||||||||||||    
T  38707146 aacaccggtcaaccaatccccaaacaaactagagattgatgccaccacatatgataaccaaaaggaaagcaaacatttctagctttcaacca 38707237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 309 - 387
Target Start/End: Original strand, 38436647 - 38436727
Alignment:
Q  309 caatccccaaacaaacaaggggttgctgtcacca--taaatggtaaccaaaaggaaagcatacatttttagctttcaacca 387  Q
    ||||||||||||| |||||||||||||| |||||  || |||  | |||||||||||||| ||||||||| ||||||||||    
T  38436647 caatccccaaacacacaaggggttgctgccaccacatatatgaaagccaaaaggaaagcaaacatttttaactttcaacca 38436727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 304 - 384
Target Start/End: Original strand, 3417550 - 3417630
Alignment:
Q  304 tcagtcaatccccaaacaaacaaggggttgctgtcaccataaatggtaaccaaaaggaaagcatacatttttagctttcaa 384  Q
    |||||||||||| |||||| |||||||  |||| ||||| | ||| ||||||||||||||||| |||||||  ||||||||    
T  3417550 tcagtcaatccctaaacaagcaaggggacgctgccaccacatatgataaccaaaaggaaagcacacattttgtgctttcaa 3417630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 304 - 387
Target Start/End: Complemental strand, 16422237 - 16422154
Alignment:
Q  304 tcagtcaatccccaaacaaacaaggggttgctgtcaccataaatggtaaccaaaaggaaagcatacatttttagctttcaacca 387  Q
    ||||||||||| ||||||||||||||| ||||| ||||| | |||  || ||| || ||| || ||||||||||||||||||||    
T  16422237 tcagtcaatcctcaaacaaacaaggggatgctgccaccacatatgacaatcaagagaaaaacacacatttttagctttcaacca 16422154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 383
Target Start/End: Complemental strand, 33023645 - 33023571
Alignment:
Q  309 caatccccaaacaaacaaggggttgctgtcaccataaatggtaaccaaaaggaaagcatacatttttagctttca 383  Q
    |||| |||||||| ||||| ||||| || | ||| | ||| |||||||||||||| || ||||||||||||||||    
T  33023645 caatgcccaaacagacaagaggttgatgccgccacatatgataaccaaaaggaaaacacacatttttagctttca 33023571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 345 - 387
Target Start/End: Complemental strand, 40526052 - 40526010
Alignment:
Q  345 aatggtaaccaaaaggaaagcatacatttttagctttcaacca 387  Q
    |||| ||||||||| |||| |||||||||||||||||||||||    
T  40526052 aatgataaccaaaaagaaaacatacatttttagctttcaacca 40526010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0394 (Bit Score: 64; Significance: 8e-28; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 304 - 387
Target Start/End: Complemental strand, 5344 - 5261
Alignment:
Q  304 tcagtcaatccccaaacaaacaaggggttgctgtcaccataaatggtaaccaaaaggaaagcatacatttttagctttcaacca 387  Q
    ||||||||||||||||||||||| ||| |||||| |||||||||| |||||||||||||| |||||||||||||||||||||||    
T  5344 tcagtcaatccccaaacaaacaaagggatgctgttaccataaatgataaccaaaaggaaaacatacatttttagctttcaacca 5261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 296 - 387
Target Start/End: Complemental strand, 8607001 - 8606909
Alignment:
Q  296 aacaacggtcagtcaa-tccccaaacaaacaaggggttgctgtcaccataaatggtaaccaaaaggaaagcatacatttttagctttcaacca 387  Q
    |||||||||||| ||| ||||||||||||||||||||||||  ||||| | |||||||||||||||||||||  |||||||||||||||||||    
T  8607001 aacaacggtcagccaaatccccaaacaaacaaggggttgctcccaccacatatggtaaccaaaaggaaagcaagcatttttagctttcaacca 8606909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 311 - 387
Target Start/End: Complemental strand, 21431477 - 21431401
Alignment:
Q  311 atccccaaacaaacaaggggttgctgtcaccataaatggtaaccaaaaggaaagcatacatttttagctttcaacca 387  Q
    ||||| |||||||||||||| || || ||||||||||| |||||||||| |||||| ||||||||||||||||||||    
T  21431477 atccctaaacaaacaaggggatgttgccaccataaatgataaccaaaagaaaagcacacatttttagctttcaacca 21431401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 304 - 388
Target Start/End: Complemental strand, 43109461 - 43109377
Alignment:
Q  304 tcagtcaatccccaaacaaacaaggggttgctgtcaccataaatggtaaccaaaaggaaagcatacatttttagctttcaaccat 388  Q
    |||||||||||| |||||| |||||||  |||| | ||||||||| ||||||||||||||||| |||||||| ||||||||||||    
T  43109461 tcagtcaatccctaaacaagcaaggggacgctgccgccataaatgataaccaaaaggaaagcacacattttttgctttcaaccat 43109377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 304 - 388
Target Start/End: Original strand, 4163622 - 4163706
Alignment:
Q  304 tcagtcaatccccaaacaaacaaggggttgctgtcaccataaatggtaaccaaaaggaaagcatacatttttagctttcaaccat 388  Q
    |||| ||||||| |||||| |||||||  |||| | ||||||||| ||||||||||||||||| |||||||| ||||||||||||    
T  4163622 tcagccaatccctaaacaagcaaggggacgctgccgccataaatgataaccaaaaggaaagcacacattttttgctttcaaccat 4163706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 311 - 387
Target Start/End: Original strand, 32703045 - 32703121
Alignment:
Q  311 atccccaaacaaacaaggggttgctgtcaccataaatggtaaccaaaaggaaagcatacatttttagctttcaacca 387  Q
    ||||| |||||||||||||| ||||| ||||||||||  |||||||||| |||||| || |||||||||||||||||    
T  32703045 atccctaaacaaacaaggggatgctgccaccataaattataaccaaaagaaaagcacacttttttagctttcaacca 32703121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 304 - 388
Target Start/End: Original strand, 34205913 - 34205997
Alignment:
Q  304 tcagtcaatccccaaacaaacaaggggttgctgtcaccataaatggtaaccaaaaggaaagcatacatttttagctttcaaccat 388  Q
    |||| ||||||| ||||||  ||||||  |||| ||||||||||| ||||||||||||||||| |||||||| ||||||||||||    
T  34205913 tcagccaatccctaaacaagtaaggggacgctgccaccataaatgataaccaaaaggaaagcacacattttttgctttcaaccat 34205997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 304 - 388
Target Start/End: Complemental strand, 39295930 - 39295846
Alignment:
Q  304 tcagtcaatccccaaacaaacaaggggttgctgtcaccataaatggtaaccaaaaggaaagcatacatttttagctttcaaccat 388  Q
    |||||||||||||||||||| |||||| ||||| ||||| | ||  |||||||| | |||||| |||||||| | ||||||||||    
T  39295930 tcagtcaatccccaaacaaataaggggatgctgccaccacatataataaccaaatgaaaagcacacattttttgttttcaaccat 39295846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 325 - 387
Target Start/End: Complemental strand, 5652001 - 5651939
Alignment:
Q  325 aaggggttgctgtcaccataaatggtaaccaaaaggaaagcatacatttttagctttcaacca 387  Q
    |||||| ||||| ||||| ||||| |||||||||| ||| || ||||||||||||||||||||    
T  5652001 aaggggatgctgccaccacaaatgataaccaaaagaaaaacacacatttttagctttcaacca 5651939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 304 - 387
Target Start/End: Original strand, 45459015 - 45459098
Alignment:
Q  304 tcagtcaatccccaaacaaacaaggggttgctgtcaccataaatggtaaccaaaaggaaagcatacatttttagctttcaacca 387  Q
    |||| |||||||||||||| ||| |||  | |||||| | | ||| |||||||| |||||||| |||||||| |||||||||||    
T  45459015 tcagccaatccccaaacaagcaaagggacgttgtcactacatatgataaccaaatggaaagcacacattttttgctttcaacca 45459098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 378
Target Start/End: Complemental strand, 48163001 - 48162936
Alignment:
Q  313 ccccaaacaaacaaggggttgctgtcaccataaatggtaaccaaaaggaaagcatacatttttagc 378  Q
    |||||||||||| || |||||||| ||| | | |||||||||||||| ||| || |||||||||||    
T  48163001 ccccaaacaaactagaggttgctgccactacatatggtaaccaaaagaaaaacaaacatttttagc 48162936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 177 - 209
Target Start/End: Complemental strand, 26788627 - 26788595
Alignment:
Q  177 ttttttaacaagtcaaaatcagatatattaaca 209  Q
    ||||||||||||||||||| |||||||||||||    
T  26788627 ttttttaacaagtcaaaatgagatatattaaca 26788595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 211
Target Start/End: Original strand, 38106950 - 38106990
Alignment:
Q  171 attttgttttttaacaagtcaaaatcagatatattaacaaa 211  Q
    ||||| ||||| ||||||||||||| |||||||||||||||    
T  38106950 attttttttttcaacaagtcaaaatgagatatattaacaaa 38106990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 244 - 387
Target Start/End: Complemental strand, 19617441 - 19617298
Alignment:
Q  244 agaaacagaacaaaaatacaacaatcaatccttaaaaattaaaatagaggaaaacaacggtcagtcaatccccaaacaaacaaggggttgctgtcaccat 343  Q
    |||| |||||||||| ||||| ||  |||||  |||||| ||||  | ||||||||||  |||| |||||||||||||||||||||||||||| |||||     
T  19617441 agaagcagaacaaaattacaaaaactaatccagaaaaatcaaaaaggtggaaaacaactatcagccaatccccaaacaaacaaggggttgctgccaccac 19617342  T
Q  344 aaatggtaaccaaaaggaaagcatacatttttagctttcaacca 387  Q
    | |||  ||||||||| ||||||  |||| ||||||||||||||    
T  19617341 atatgtgaaccaaaagaaaagcaagcattcttagctttcaacca 19617298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 304 - 388
Target Start/End: Complemental strand, 3490397 - 3490313
Alignment:
Q  304 tcagtcaatccccaaacaaacaaggggttgctgtcaccataaatggtaaccaaaaggaaagcatacatttttagctttcaaccat 388  Q
    |||||||||||||||||||  ||||||  |||| ||||| | ||||||||||||||||||||| |||||||| ||||||||||||    
T  3490397 tcagtcaatccccaaacaagtaaggggacgctgccaccacatatggtaaccaaaaggaaagcacacattttttgctttcaaccat 3490313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 304 - 388
Target Start/End: Original strand, 31933833 - 31933917
Alignment:
Q  304 tcagtcaatccccaaacaaacaaggggttgctgtcaccataaatggtaaccaaaaggaaagcatacatttttagctttcaaccat 388  Q
    |||||||||||||||||||  ||||||  |||| ||||| | ||||||||||||||||||||| |||||||| ||||||||||||    
T  31933833 tcagtcaatccccaaacaagtaaggggacgctgccaccacatatggtaaccaaaaggaaagcacacattttttgctttcaaccat 31933917  T

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Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 317 - 387
Target Start/End: Complemental strand, 17714139 - 17714069
Alignment:
Q  317 aaacaaacaaggggttgctgtcaccataaatggtaaccaaaaggaaagcatacatttttagctttcaacca 387  Q
    |||||| | ||||| ||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  17714139 aaacaatctaggggatgctgccaccataaatgataaccaaaaggaaagcacacatttttagctttcaacca 17714069  T

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Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 304 - 388
Target Start/End: Original strand, 26710816 - 26710900
Alignment:
Q  304 tcagtcaatccccaaacaaacaaggggttgctgtcaccataaatggtaaccaaaaggaaagcatacatttttagctttcaaccat 388  Q
    |||| ||||||| |||||| |||||||  |||| ||||| ||||| ||||||||||||||||| |||||||| ||||||||||||    
T  26710816 tcagccaatccctaaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaagcacacattttttgctttcaaccat 26710900  T

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Target: chr6; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 311 - 387
Target Start/End: Complemental strand, 33754721 - 33754645
Alignment:
Q  311 atccccaaacaaacaaggggttgctgtcaccataaatggtaaccaaaaggaaagcatacatttttagctttcaacca 387  Q
    ||||| |||||| ||||||| |  || ||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  33754721 atccctaaacaagcaaggggattttgccaccataaatgataaccaaaaggaaagcacacatttttagctttcaacca 33754645  T

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Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 304 - 388
Target Start/End: Complemental strand, 1309224 - 1309140
Alignment:
Q  304 tcagtcaatccccaaacaaacaaggggttgctgtcaccataaatggtaaccaaaaggaaagcatacatttttagctttcaaccat 388  Q
    |||| ||||||  |||||| |||||||  |||||||||| ||||| |||||||||||||| || |||||||| ||||||||||||    
T  1309224 tcagccaatccttaaacaagcaagggggcgctgtcaccacaaatgataaccaaaaggaaaacacacattttttgctttcaaccat 1309140  T

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Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 311 - 387
Target Start/End: Complemental strand, 24991573 - 24991498
Alignment:
Q  311 atccccaaacaaacaaggggttgctgtcaccataaatggtaaccaaaaggaaagcatacatttttagctttcaacca 387  Q
    ||||| |||||||||||||| ||||| ||||||||||| ||| ||||| | ||||| ||||||||||||||||||||    
T  24991573 atccctaaacaaacaaggggatgctgccaccataaatgataatcaaaaag-aagcacacatttttagctttcaacca 24991498  T

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Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 304 - 388
Target Start/End: Original strand, 16467002 - 16467086
Alignment:
Q  304 tcagtcaatccccaaacaaacaaggggttgctgtcaccataaatggtaaccaaaaggaaagcatacatttttagctttcaaccat 388  Q
    |||| ||||||| |||||| |||||||  |||| ||||| ||||| ||| ||||||||||||| |||||||| | ||||||||||    
T  16467002 tcagccaatccctaaacaagcaaggggacgctgccaccacaaatgataatcaaaaggaaagcacacattttttgttttcaaccat 16467086  T

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Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 304 - 388
Target Start/End: Complemental strand, 33147025 - 33146941
Alignment:
Q  304 tcagtcaatccccaaacaaacaaggggttgctgtcaccataaatggtaaccaaaaggaaagcatacatttttagctttcaaccat 388  Q
    |||||||||| | |||||| |||||||  |||| ||||| ||||| |||||||||||||||||   |||||| | ||||||||||    
T  33147025 tcagtcaatctctaaacaagcaaggggacgctgccaccacaaatgataaccaaaaggaaagcacgtattttttgatttcaaccat 33146941  T

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Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 338 - 383
Target Start/End: Complemental strand, 12954430 - 12954385
Alignment:
Q  338 caccataaatggtaaccaaaaggaaagcatacatttttagctttca 383  Q
    ||||||| |||||| ||||||||||| || ||||||||||||||||    
T  12954430 caccatatatggtacccaaaaggaaaacagacatttttagctttca 12954385  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 211
Target Start/End: Complemental strand, 1309361 - 1309321
Alignment:
Q  171 attttgttttttaacaagtcaaaatcagatatattaacaaa 211  Q
    ||||| |||||||||||| |||||| |||||||||||||||    
T  1309361 atttttttttttaacaagccaaaatgagatatattaacaaa 1309321  T

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Target: scaffold0175 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0175
Description:

Target: scaffold0175; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 298 - 406
Target Start/End: Complemental strand, 19800 - 19692
Alignment:
Q  298 caacggtcagtcaatccccaaacaaacaaggggttgctgtcaccataaatggtaaccaaaaggaaagcatacatttttagctttcaaccatgaaagtgta 397  Q
    |||| ||||| | |||||||||||||||| |||||| ||   ||| | ||| |||||||||| |||| | ||||| |||||||| ||| | | ||||| |    
T  19800 caacagtcagcctatccccaaacaaacaacgggttggtgcggccacatatgataaccaaaagaaaagtaaacattcttagcttttaactaggtaagtgaa 19701  T
Q  398 gtgattttt 406  Q
    |||||||||    
T  19700 gtgattttt 19692  T

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