View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2762_low_10 (Length: 376)
Name: NF2762_low_10
Description: NF2762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2762_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 11848327 - 11848686
Alignment:
| Q |
1 |
ttgtgaaacttcattgcctatgcatctttcagaatataatgcgacgttacaaggtttaaggggaccaaatattagtgagtgtagctatgctttgatttta |
100 |
Q |
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| T |
11848327 |
ttgtgaaacttcattgcctatgcatctttcagaatataatgcgacgttacaaggtttaaggggaccaaatattagtgagtgtagctatgctttgatttta |
11848426 |
T |
|
| Q |
101 |
agtcgtcgttgggtatcttttgatgggttgtcaccatatttgagtacttattatcttgagaattttaataagttggaggatatggagtatgcaccagcaa |
200 |
Q |
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| T |
11848427 |
agtcgtcgttgggtatattttgatgggttgtcatcatatttgagtacttattatcttgagaattttaataagttggaggatatggagtatgcaccagcaa |
11848526 |
T |
|
| Q |
201 |
tgcttgagtgggaaattttgaatgatatgttgattaattctacatttcaacttccttcagattcatattcaaattgttatgattccaaagttacatccat |
300 |
Q |
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| T |
11848527 |
tgcttgagtgggaaattttgaatgatatgttgattaattctacatttcaacttccttcagattcatattcaaattgttatgattcccaagttacatccat |
11848626 |
T |
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| Q |
301 |
agataacagaaacactggtcggcaatgccaatgcttctggggttactttggcaatcccta |
360 |
Q |
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| T |
11848627 |
aaataacagaaacactggtcggcaatgccaatgcttctcgggttactttggcaatcccta |
11848686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 11843642 - 11843962
Alignment:
| Q |
1 |
ttgtgaaacttcattgcctatgcatctttcagaatataatgcgacgttacaaggtttaaggggaccaaatattagtgagtgtagctatgctttgatttta |
100 |
Q |
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|||||||||||||||||||| ||||||||| ||||||||||| ||||| ||||||||||| | || || |||| | ||||||| ||||||||||||||| |
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| T |
11843642 |
ttgtgaaacttcattgcctacgcatctttcggaatataatgcaacgtttcaaggtttaagcgaacaaagtattgatcagtgtagttatgctttgatttta |
11843741 |
T |
|
| Q |
101 |
agtcgtcgttgggtatcttttgatgggttgtcaccatatttgagtacttattatcttgagaattttaataagttggaggatatggagtatgcaccagcaa |
200 |
Q |
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||| | |||| ||||||||||||||| ||||||||||||| ||||||| |||||| | ||||||||||||||||||||| |
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| T |
11843742 |
agtgataattggatatcttttgatgggt------catatttgagtac---------------ttttaatgagttggggaatatggagtatgcaccagcaa |
11843820 |
T |
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| Q |
201 |
tgcttgagtgggaaattttgaatgatatgttgattaattctacatttcaacttccttcagattcatattcaaattgttatgattccaaagttacatccat |
300 |
Q |
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| T |
11843821 |
tgcttgagtgggaaatt------------ttggttaattcgacatttcaacttccttcagattcat------attgttatgattccaaagttacatcttt |
11843902 |
T |
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| Q |
301 |
agataacagaaacactggtcggcaatgccaatgcttctggggttactttggcaatcccta |
360 |
Q |
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| T |
11843903 |
aaataacagaaccactggtcggaaatgtcaatgctcctcgggttacaccggcaatcccta |
11843962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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