View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2762_low_13 (Length: 327)
Name: NF2762_low_13
Description: NF2762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2762_low_13 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 44 - 313
Target Start/End: Complemental strand, 1033286 - 1033017
Alignment:
| Q |
44 |
tgatttgacgattatgatcgaatgacgatttaaaaaatctttacatggaagatgcataagaattaaatccaacaaaaatgttttgaatctttcatcatct |
143 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1033286 |
tgatttgacgattatgatcgaatgacgatttaaaaaatctttacatggaaaatgcataagaattaaatccaacaaaaatgttttgaatctttcatcatct |
1033187 |
T |
|
| Q |
144 |
aattaaaagaaacacctgttgtatgtcttcagaatcttctctttcattgcttaaaagaggggacatttgttcagatgttaagggcaaaatagaggagaca |
243 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1033186 |
aatcaaaagaaacacctgttgtatgtcttcagaatcttctctttcattgcttaaaagaggggacatttgttcagatgttaagggcaaaatagaggagaca |
1033087 |
T |
|
| Q |
244 |
gaattggatgcaccaagatgaagctgcaatttgttaactccaacatcatgctccatttcatgtgatatgt |
313 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
1033086 |
gaattcgatgcaccaagatgaagctgcaatttgttaactccaacaccatgctccatttcatgtgatatgt |
1033017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 113
Target Start/End: Original strand, 7690016 - 7690090
Alignment:
| Q |
39 |
tttaatgatttgacgattatgatcgaatgacgatttaaaaaatctttacatggaagatgcataagaattaaatcc |
113 |
Q |
| |
|
|||||||| ||||||||||| || |||||| || |||||||| ||||||| || |||| ||||||||||||||| |
|
|
| T |
7690016 |
tttaatgaattgacgattataattgaatgagaatataaaaaatatttacattgatgatgtataagaattaaatcc |
7690090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 113
Target Start/End: Original strand, 7689902 - 7689976
Alignment:
| Q |
39 |
tttaatgatttgacgattatgatcgaatgacgatttaaaaaatctttacatggaagatgcataagaattaaatcc |
113 |
Q |
| |
|
|||||||| ||||||||||| || |||||| | |||||||| ||||||| || |||| ||||||||||||||| |
|
|
| T |
7689902 |
tttaatgaattgacgattataattgaatgagaaaataaaaaatatttacattgatgatgtataagaattaaatcc |
7689976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 88
Target Start/End: Original strand, 29427840 - 29427888
Alignment:
| Q |
40 |
ttaatgatttgacgattatgatcgaatgacgatttaaaaaatctttaca |
88 |
Q |
| |
|
||||||||||||| |||||||| ||||||| ||||||||||||||||| |
|
|
| T |
29427840 |
ttaatgatttgacaattatgattgaatgacagtttaaaaaatctttaca |
29427888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 89
Target Start/End: Original strand, 15867645 - 15867695
Alignment:
| Q |
39 |
tttaatgatttgacgattatgatcgaatgacgatttaaaaaatctttacat |
89 |
Q |
| |
|
||||||||| ||||||||||||| || ||||| | |||||||||||||||| |
|
|
| T |
15867645 |
tttaatgatatgacgattatgattgattgacgttgtaaaaaatctttacat |
15867695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University