View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2762_low_19 (Length: 266)
Name: NF2762_low_19
Description: NF2762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2762_low_19 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 20103756 - 20103491
Alignment:
| Q |
1 |
cacagagaacttctaaagaaaagcattgagtggttgaaagacacatcacagtcatgctcagttgtagcagcactcgtcgcgggtgtctcctttgctacat |
100 |
Q |
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|||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||| |
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| T |
20103756 |
cacaaagaacttctagataaaagcattgagtggttgaaagacacatcacagtcatgctcagttgtagcggcactcgtcgcaggcgtctcctttgctacat |
20103657 |
T |
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| Q |
101 |
caggcagcgtccccggaggcaatcagagtacaggaaaaccaacattcgaaggacaacctgcatttgaagtattctctatatcttcgttaattggacttta |
200 |
Q |
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| T |
20103656 |
caggcagcgtccccggaggtaatcagaatactggaaaaccaacattcgaaggacagcctgcattcgaagtattctctatatcttcgttaattggacttta |
20103557 |
T |
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| Q |
201 |
cttctctgccactgcactcatcatgttccttgctatactcacttctcgaaaccaagtcgaagactt |
266 |
Q |
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| T |
20103556 |
cttctctgccactgcactcatcatgttccttgctttactcacttctcgaaaacaagtcgaagactt |
20103491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 20079439 - 20079174
Alignment:
| Q |
1 |
cacagagaacttctaaagaaaagcattgagtggttgaaagacacatcacagtcatgctcagttgtagcagcactcgtcgcgggtgtctcctttgctacat |
100 |
Q |
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|||| |||||||||| | | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||| |
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| T |
20079439 |
cacaaagaacttctacaaagcagcattgagtggttgaaagacacatcagagtcatgctcagttgtagcagcactcgtcgcaggcgtctcctttgctacat |
20079340 |
T |
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| Q |
101 |
caggcagcgtccccggaggcaatcagagtacaggaaaaccaacattcgaaggacaacctgcatttgaagtattctctatatcttcgttaattggacttta |
200 |
Q |
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| T |
20079339 |
caggcagtgtccctggaggcaatgaccaatcagggaaaccaaatttcgaaggacagcctgcatttgaagtattctcgatatgttcattaattggacttta |
20079240 |
T |
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| Q |
201 |
cttctctgccactgcactcatcatgttccttgctatactcacttctcgaaaccaagtcgaagactt |
266 |
Q |
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| T |
20079239 |
cttctcggtcactgcactaatcatgttcctttctatactcacttctcgaaaacaagtcgaagactt |
20079174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 22 - 244
Target Start/End: Original strand, 19903647 - 19903869
Alignment:
| Q |
22 |
agcattgagtggttgaaagacacatcacagtcatgctcagttgtagcagcactcgtcgcgggtgtctcctttgctacatcaggcagcgtccccggaggca |
121 |
Q |
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| T |
19903647 |
agcattgagtggttgaaaaacacaacagagtcaagctcaattgtggcagcactcgtcgcaggcgtctcctttgctacatcatgcactgtccctggaggca |
19903746 |
T |
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| Q |
122 |
atcagagtacaggaaaaccaacattcgaaggacaacctgcatttgaagtattctctatatcttcgttaattggactttacttctctgccactgcactcat |
221 |
Q |
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| T |
19903747 |
atgaccaatcagggaaaccaaatttaaaaggacaacctgcatttgatttattctctacatgttcattaactggactttacttctctgtcacttcactcat |
19903846 |
T |
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| Q |
222 |
catgttccttgctatactcactt |
244 |
Q |
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| T |
19903847 |
ggtattcctttctatactcactt |
19903869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 6 - 263
Target Start/End: Complemental strand, 20130971 - 20130714
Alignment:
| Q |
6 |
agaacttctaaagaaaagcattgagtggttgaaagacacatcacagtcatgctcagttgtagcagcactcgtcgcgggtgtctcctttgctacatcaggc |
105 |
Q |
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|||||||||| | || |||| | ||||||| | ||| ||| |||| |||||||||| |||||||||| |||| || || ||||||| || |||| | || |
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| T |
20130971 |
agaacttctacaaaatagcactcagtggttaatagaaacaacacaatcatgctcagctgtagcagcaatcgttgccggcatctccttcgcaacattaagc |
20130872 |
T |
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| Q |
106 |
agcgtccccggaggcaatcagagtacaggaaaaccaacattcgaaggacaacctgcatttgaagtattctctatatcttcgttaattggactttacttct |
205 |
Q |
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| T |
20130871 |
agtgtccccggaggcaataaggaaacagggaaatcatcatcagaagaacatactgcattagaaggattcgcaatatcttcattaattggagtttactttt |
20130772 |
T |
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| Q |
206 |
ctgccactgcactcatcatgttccttgctatactcacttctcgaaaccaagtcgaaga |
263 |
Q |
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||| ||||||||||||| |||||||| ||||||||| | |||||| ||||||||||| |
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| T |
20130771 |
ctgtcactgcactcatcttgttcctttctatactcattgatcgaaaacaagtcgaaga |
20130714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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