View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2762_low_2 (Length: 688)
Name: NF2762_low_2
Description: NF2762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2762_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 520; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 1 - 649
Target Start/End: Complemental strand, 13139241 - 13138593
Alignment:
| Q |
1 |
gaagagggcgagttatcagagactttgaagagaataattttgcagtttatggagatgctggacctttgagagaaaggaaatgattataagataagcatat |
100 |
Q |
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| T |
13139241 |
gaagagggcgagttatcagagactttgaagaggataattttgcagtttatggagatcctggacctttgagagaaaggaaatgattataagataagcatat |
13139142 |
T |
|
| Q |
101 |
aacattttacttctcaaatt-aatgtaagtatatgtagcatattattatgagacaaagttgacaatgataaggacctcaataaaatctgctaaagctcta |
199 |
Q |
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| T |
13139141 |
aacattttatttctcaaatttaatgaaagtatatgtagcatattattatgaggcaaagttgacaatgataaggacctcaataaaatctgctaaagctcta |
13139042 |
T |
|
| Q |
200 |
cttttattaggtcaccgatnnnnnnnnttgacattagttttaataaacaaaaaaggcctcaattaaggaggttgagactgaaagttttattaattaatac |
299 |
Q |
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| T |
13139041 |
cttttattaggtcaccgataaaaaaaattgacattagttttaataaacaaaaaaggcctcaattaaggaggttgagactgaaagttttattaattaatac |
13138942 |
T |
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| Q |
300 |
aattaaaaaatgattgatagaatgatcatatacgtttaaaagaatacatgttgacctcaatgtttcatacatcatgttcatgccaatgaaaggtgtattt |
399 |
Q |
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| T |
13138941 |
aattaaaaaatgattgatagaatgatcatatacgtttaaaagaatacatgatgacctcaatgtttaatacatcatgttcatgccaatgaaagatgtattt |
13138842 |
T |
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| Q |
400 |
tgtgacnnnnnnnngttgtctagttctaacaacaaaaataaaactgtgtaaaatgattttagaaaacatttgtgttatttgatcatagtttcattgatgc |
499 |
Q |
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| T |
13138841 |
tgtgacaaaaaaa-gttgtctagttctaacaacaaaaataaaactgtgtaaaatgattttagaaaacatttgtgttatttgatcatagtttcattgatgc |
13138743 |
T |
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| Q |
500 |
acaataaggattaaaatatgacttaatattgttggcgatcattgctatcaattaggagagatttgattaagttccaacttgctagcannnnnnnccttct |
599 |
Q |
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| T |
13138742 |
acaataaggattaaaatctgacttaatattgtcggcgatcaatgctatcaattaggagagatttgattaagttccaacttgctagcatttttttccttct |
13138643 |
T |
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| Q |
600 |
tctaacaagtgttctaagatcatttttaaggaacccataaataaaaaatt |
649 |
Q |
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| T |
13138642 |
tcgaacaagtgttctaagatcatttttaaggaacccataaataaaaaatt |
13138593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 16024842 - 16024800
Alignment:
| Q |
19 |
gagactttgaagagaataattttgcagtttatggagatgctgg |
61 |
Q |
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| T |
16024842 |
gagactttgaagaggataattttgcagtttatggagatgctgg |
16024800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 648 - 688
Target Start/End: Complemental strand, 13138434 - 13138394
Alignment:
| Q |
648 |
ttaaagaagagaaagcaaaacaaaggagggggatataaagc |
688 |
Q |
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| T |
13138434 |
ttaaagaagagaaagcaaaacaaaggagggggagataaagc |
13138394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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