View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2762_low_20 (Length: 250)
Name: NF2762_low_20
Description: NF2762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2762_low_20 |
 | |
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| [»] chr2 (10 HSPs) |
| |
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| [»] chr8 (4 HSPs) |
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| [»] chr4 (6 HSPs) |
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| [»] chr7 (8 HSPs) |
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| [»] chr6 (4 HSPs) |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 152; Significance: 1e-80; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 17 - 250
Target Start/End: Complemental strand, 5381125 - 5380893
Alignment:
| Q |
17 |
tcaagacaaagcaaagaaacaaaatgagtgatgattttctttcaaataacttggttatttacattgaaaaagagattgcaagtcagtttagctcagatgc |
116 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| | ||||||||||| |||||||||||||| |
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|
| T |
5381125 |
tcaagacaaaacaaagaaacaaaatgagtgatgattttctttcaaacaacttggttatctacattgaaaagaacattgcaagtcaatttagctcagatgc |
5381026 |
T |
|
| Q |
117 |
aattatggatgaatttgagtctttgaagggccgctgagttcaattttcataaataactactattagtatatatttcttttgttgtagcnnnnnnnggtac |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||||||||| | |||||||||||||||||| ||||| |
|
|
| T |
5381025 |
aattatggatgaatttgagtctttgaagggccgacgagttcaattttcataaatagccactattagtttttatttcttttgttgtagc-ttttttggtac |
5380927 |
T |
|
| Q |
217 |
aatccgttattctactgtggcttttttggtacaa |
250 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| |
|
|
| T |
5380926 |
aatccgctattctactgtggcttttttggtacaa |
5380893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 17 - 250
Target Start/End: Complemental strand, 36314304 - 36314071
Alignment:
| Q |
17 |
tcaagacaaagcaaagaaacaaaatgagtgatgattttctttcaaataacttggttatttacattgaaaaagagattgcaagtcagtttagctcagatgc |
116 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||| |||||||||| ||||||| |||||| |
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|
| T |
36314304 |
tcaagacaaaacaataaaacaaaatgagtgatgattttctttcaaatagcttggtcattaacattgaaaaagacattgcaagtccatttagctaagatgc |
36314205 |
T |
|
| Q |
117 |
aattatggatgaatttgagtctttgaagggccgctgagttcaattttcataaataactactattagtatatatttcttttgttgtagcnnnnnnnggtac |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||| ||||||| | ||||||||||||||||| | ||| |
|
|
| T |
36314204 |
aattatggatgaatttgagtctttgaagggccgccgagttcaattttcataagtagctattattagtttttatttcttttgttgtagttttttttgatac |
36314105 |
T |
|
| Q |
217 |
aatccgttattctactgtggcttttttggtacaa |
250 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||| |
|
|
| T |
36314104 |
aatccgctattctactgtggtttttttggtacaa |
36314071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 17 - 204
Target Start/End: Complemental strand, 1592821 - 1592634
Alignment:
| Q |
17 |
tcaagacaaagcaaagaaacaaaatgagtgatgattttctttcaaataacttggttatttacattgaaaaagagattgcaagtcagtttagctcagatgc |
116 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||| |||||||||| ||||| | |||||| |
|
|
| T |
1592821 |
tcaagacaaaacaatgaaacaaaatgagtgatgattttctttcaaatagcttggtcattaacattgaaaaagacattgcaagtccatttagttaagatgc |
1592722 |
T |
|
| Q |
117 |
aattatggatgaatttgagtctttgaagggccgctgagttcaattttcataaataactactattagtatatatttcttttgttgtagc |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||| ||||||| | ||| |||||||||||||| |
|
|
| T |
1592721 |
aattatggatgaatttgagtctttgaagggccgccgagttcaattttcataagtagctattattagtttttatatcttttgttgtagc |
1592634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 20 - 203
Target Start/End: Original strand, 25280426 - 25280611
Alignment:
| Q |
20 |
agacaaagcaaagaaacaaaatgagtgatgattttctttcaaataacttggttatttacattgaaaaagagattgcaagtcagtttagctcagatgcaat |
119 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||| || |||||||||| ||||| || ||||||||| |
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|
| T |
25280426 |
agacaaaataaagaaacaaaatgagtgatgattttcttgcaagtagcttggttatttacattgaaaaggacattgcaagtcggtttacctgagatgcaat |
25280525 |
T |
|
| Q |
120 |
tatggatgaatttgagtctttgaagggccgctgagttcaattttcataaataactac--tattagtatatatttcttttgttgtag |
203 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||||||||| ||||||| |||| ||||||| | |||||||||||| |||| |
|
|
| T |
25280526 |
tatggatgaatttgagtctttgaagggtggtcgagttcaatttttataaatagctactatattagtttttatttcttttgtggtag |
25280611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 51 - 250
Target Start/End: Complemental strand, 19590650 - 19590451
Alignment:
| Q |
51 |
ttttctttcaaataacttggttatttacattgaaaaagagattgcaagtcagtttagctcagatgcaattatggatgaatttgagtctttgaagggccgc |
150 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||| || ||| ||||||| ||||||| |||||||| ||||||||||||||||| ||||||||| | |
|
|
| T |
19590650 |
ttttcttgcaaatagtatggttatttacattgaaaaggacatttcaagtcattttagctaagatgcaactatggatgaatttgagtttttgaagggtctt |
19590551 |
T |
|
| Q |
151 |
tgagttcaattttcataaataactactattagtatatatttcttttgttgtagcnnnnnnnggtacaatccgttattctactgtggcttttttggtacaa |
250 |
Q |
| |
|
|||||||||||||||||||| |||||||||| | ||||||||||||| ||| |||||||||| |||||||| ||| |||||||| ||||| |
|
|
| T |
19590550 |
cgagttcaattttcataaatagttactattagtttttatttcttttgttatagtttttttttgtacaatccgctattctaccgtgacttttttgatacaa |
19590451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 71 - 181
Target Start/End: Complemental strand, 41055613 - 41055503
Alignment:
| Q |
71 |
ttatttacattgaaaaagagattgcaagtcagtttagctcagatgcaattatggatgaatttgagtctttgaagggccgctgagttcaattttcataaat |
170 |
Q |
| |
|
|||||||||||||||| || |||| | |||||||||||||| | ||||||||||||||||||||||||| || || || ||||||| | |||||||||| |
|
|
| T |
41055613 |
ttatttacattgaaaaggacattggatgtcagtttagctcatagacaattatggatgaatttgagtctttaaaaggtcgttgagttcgactttcataaat |
41055514 |
T |
|
| Q |
171 |
aactactatta |
181 |
Q |
| |
|
| ||||||||| |
|
|
| T |
41055513 |
agctactatta |
41055503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 96 - 204
Target Start/End: Complemental strand, 12563640 - 12563532
Alignment:
| Q |
96 |
aagtcagtttagctcagatgcaattatggatgaatttgagtctttgaagggccgctgagttcaattttcataaataactactattagtatatatttcttt |
195 |
Q |
| |
|
||||| |||||||||| ||||||||||| |||||||||||| |||||||| || ||||| |||||||||| | ||||||||||| | ||||||||| |
|
|
| T |
12563640 |
aagtcggtttagctcaaatgcaattatgaatgaatttgagtttttgaaggattaatgggttcagttttcataaacagctactattagtttttatttcttt |
12563541 |
T |
|
| Q |
196 |
tgttgtagc |
204 |
Q |
| |
|
||||||||| |
|
|
| T |
12563540 |
tgttgtagc |
12563532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 179
Target Start/End: Complemental strand, 21613102 - 21612994
Alignment:
| Q |
71 |
ttatttacattgaaaaagagattgcaagtcagtttagctcagatgcaattatggatgaatttgagtctttgaagggccgctgagttcaattttcataaat |
170 |
Q |
| |
|
||||||||||||||||||| ||||||||||| || | ||| | ||| |||| |||||||||||||||||||||| ||| ||||| | |||| ||||| |
|
|
| T |
21613102 |
ttatttacattgaaaaagacattgcaagtcacttaaattcataagcagttatagatgaatttgagtctttgaaggatcgccaagttcgactttcgtaaat |
21613003 |
T |
|
| Q |
171 |
aactactat |
179 |
Q |
| |
|
| ||||||| |
|
|
| T |
21613002 |
agctactat |
21612994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 179
Target Start/End: Original strand, 21278949 - 21279057
Alignment:
| Q |
71 |
ttatttacattgaaaaagagattgcaagtcagtttagctcagatgcaattatggatgaatttgagtctttgaagggccgctgagttcaattttcataaat |
170 |
Q |
| |
|
||||||| ||| |||| || ||||||||||| || | |||| | ||| |||||||||||||||||| |||||||| || |||||| | ||| |||||| |
|
|
| T |
21278949 |
ttatttatattaaaaaggatattgcaagtcacttaaactcataggcacttatggatgaatttgagtatttgaaggatcgtcgagttcgacttttataaat |
21279048 |
T |
|
| Q |
171 |
aactactat |
179 |
Q |
| |
|
| ||||||| |
|
|
| T |
21279049 |
agctactat |
21279057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 213 - 250
Target Start/End: Original strand, 10585948 - 10585985
Alignment:
| Q |
213 |
gtacaatccgttattctactgtggcttttttggtacaa |
250 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
10585948 |
gtacaatccgttattctattgtggtttttttggtacaa |
10585985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 149; Significance: 8e-79; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 17 - 250
Target Start/End: Original strand, 2812348 - 2812580
Alignment:
| Q |
17 |
tcaagacaaagcaaagaaacaaaatgagtgatgattttctttcaaataacttggttatttacattgaaaaagagattgcaagtcagtttagctcagatgc |
116 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
2812348 |
tcaagacaaaacaaagaaacaaaatgagtgatgattttctttcaaatagcttggttatttacattgaaaaagacattgcaagtcagtttaactcagatgc |
2812447 |
T |
|
| Q |
117 |
aattatggatgaatttgagtctttgaagggccgctgagttcaattttcataaataactactattagtatatatttcttttgttgtagcnnnnnnnggtac |
216 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| | |||||||||||||||||||| ||||||||| | | ||||||||||||||||| |||| |
|
|
| T |
2812448 |
aattatggatgaatttgagtctttgaagagccaccgagttcaattttcataaatagctactattaatttttatttcttttgttgtag-tttttttggtat |
2812546 |
T |
|
| Q |
217 |
aatccgttattctactgtggcttttttggtacaa |
250 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||| |
|
|
| T |
2812547 |
aatccgctattctactgtggtttttttggtacaa |
2812580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 17 - 250
Target Start/End: Original strand, 18606346 - 18606578
Alignment:
| Q |
17 |
tcaagacaaagcaaagaaacaaaatgagtgatgattttctttcaaataacttggttatttacattgaaaaagagattgcaagtcagtttagctcagatgc |
116 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||||||||||||||||| ||| || ||| ||||||||||||| |||||||||| ||||||| |||||| |
|
|
| T |
18606346 |
tcaagacaaaacaatgaaacaaaatgagtgatgattttctttcaaatagcttagtcattaacattgaaaaagacattgcaagtccatttagctaagatgc |
18606445 |
T |
|
| Q |
117 |
aattatggatgaatttgagtctttgaagggccgctgagttcaattttcataaataactactattagtatatatttcttttgttgtagcnnnnnnnggtac |
216 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||| ||||||||||||||||| || ||| ||||||| | |||||||||||||||||| | ||| |
|
|
| T |
18606446 |
aattatggatgaatttgggtctttgaaggaccgccgagttcaattttcataagtagctattattagtttttatttcttttgttgtagc-ttttttgatac |
18606544 |
T |
|
| Q |
217 |
aatccgttattctactgtggcttttttggtacaa |
250 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||| |
|
|
| T |
18606545 |
aatccgctattctactgtggtttttttggtacaa |
18606578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 17 - 136
Target Start/End: Original strand, 26858485 - 26858604
Alignment:
| Q |
17 |
tcaagacaaagcaaagaaacaaaatgagtgatgattttctttcaaataacttggttatttacattgaaaaagagattgcaagtcagtttagctcagatgc |
116 |
Q |
| |
|
|||||||||| ||||||| |||| |||||| ||||||| | ||||| |||||||||| |||||||||| | ||||||| ||||||||||||||| || |
|
|
| T |
26858485 |
tcaagacaaaataaagaaataaaacgagtgacgattttcatgaaaatagcttggttattgacattgaaaaggtcattgcaaatcagtttagctcagaggc |
26858584 |
T |
|
| Q |
117 |
aattatggatgaatttgagt |
136 |
Q |
| |
|
|| ||||||||||||||||| |
|
|
| T |
26858585 |
aaatatggatgaatttgagt |
26858604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 143
Target Start/End: Complemental strand, 35816470 - 35816398
Alignment:
| Q |
71 |
ttatttacattgaaaaagagattgcaagtcagtttagctcagatgcaattatggatgaatttgagtctttgaa |
143 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||| || ||| | ||||| |||| |||||||||||||| |
|
|
| T |
35816470 |
ttatttatattgaaaaagatattgcaagtcagtttaacttagagaccattatcaatgagtttgagtctttgaa |
35816398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 149; Significance: 8e-79; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 17 - 250
Target Start/End: Complemental strand, 31940204 - 31939972
Alignment:
| Q |
17 |
tcaagacaaagcaaagaaacaaaatgagtgatgattttctttcaaataacttggttatttacattgaaaaagagattgcaagtcagtttagctcagatgc |
116 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
31940204 |
tcaagacaaaacaaataaacaaaatgagtgatgattttctttcaaatagtttggttatttacattgaaaaagacattgtaagtcagtttagctcagatgc |
31940105 |
T |
|
| Q |
117 |
aattatggatgaatttgagtctttgaagggccgctgagttcaattttcataaataactactattagtatatatttcttttgttgtagcnnnnnnnggtac |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||| | |||||||||||||||||| |||| |
|
|
| T |
31940104 |
aattatggatgaatttgagtctttgaagggtcgtcgagttcaattttcataaatagctactattagtttttatttcttttgttgtagcttttttt-gtac |
31940006 |
T |
|
| Q |
217 |
aatccgttattctactgtggcttttttggtacaa |
250 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||||| |
|
|
| T |
31940005 |
aatccgctattctactgtggcttttttgatacaa |
31939972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 17 - 250
Target Start/End: Original strand, 13770084 - 13770316
Alignment:
| Q |
17 |
tcaagacaaagcaaagaaacaaaatgagtgatgattttctttcaaataacttggttatttacattgaaaaagagattgcaagtcagtttagctcagatgc |
116 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |||||||||||| | ||||||||| ||||||||||| | ||||||||||| ||||||||| |||| |
|
|
| T |
13770084 |
tcaagacaaaacaaagaaacaaaatgagtgatgcttttctttcaaacagcttggttatctacattgaaaagaacattgcaagtcaatttagctcaaatgc |
13770183 |
T |
|
| Q |
117 |
aattatggatgaatttgagtctttgaagggccgctgagttcaattttcataaataactactattagtatatatttcttttgttgtagcnnnnnnnggtac |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||| | |||||||||||||||||| ||||| |
|
|
| T |
13770184 |
aattatggatgaatttgagtctttgaagggccgacgaattcaattttcataaatagctactattagtttttatttcttttgttgtagc-ttttttggtac |
13770282 |
T |
|
| Q |
217 |
aatccgttattctactgtggcttttttggtacaa |
250 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| |
|
|
| T |
13770283 |
aatccgctattctactgtggcttttttggtacaa |
13770316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 17 - 250
Target Start/End: Complemental strand, 19032773 - 19032541
Alignment:
| Q |
17 |
tcaagacaaagcaaagaaacaaaatgagtgatgattttctttcaaataacttggttatttacattgaaaaagagattgcaagtcagtttagctcagatgc |
116 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||||||||| |||||| |||| |||||||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
19032773 |
tcaagacaaaacaaagaaacaaaatgatagatgattttcttgcaaatagcttgattatttacattgaaaaggaaattgcaagtcagtttagctcagatgc |
19032674 |
T |
|
| Q |
117 |
aattatggatgaatttgagtctttgaagggccgctgagttcaattttcataaataactactattagtatatatttcttttgttgtagcnnnnnnnggtac |
216 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||||||||||||||||||| ||| ||||||||||| | ||||||||||||||||| ||||| |
|
|
| T |
19032673 |
aattatggatgaatttgagtgtttgaagggtcgctgagttcaattttcatatatagctactattagtttttatttcttttgttgtag-attttttggtac |
19032575 |
T |
|
| Q |
217 |
aatccgttattctactgtggcttttttggtacaa |
250 |
Q |
| |
|
||| || ||||||| ||||||||||||||||||| |
|
|
| T |
19032574 |
aattcgctattctattgtggcttttttggtacaa |
19032541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 17 - 250
Target Start/End: Complemental strand, 32823512 - 32823280
Alignment:
| Q |
17 |
tcaagacaaagcaaagaaacaaaatgagtgatgattttctttcaaataacttggttatttacattgaaaaagagattgcaagtcagtttagctcagatgc |
116 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |||||||||||| ||| |||| |||| |
|
|
| T |
32823512 |
tcaagacaaaataaagaaacaaaatgagcaatgattttctttcaaatagcttggttatttacattgaaaaagacattgcaagtcagattacctcatatgc |
32823413 |
T |
|
| Q |
117 |
aattatggatgaatttgagtctttgaagggccgctgagttcaattttcataaataactactattagtatatatttcttttgttgtagcnnnnnnnggtac |
216 |
Q |
| |
|
|||||||||||||||| ||||||| || |||||| ||||| |||| ||||||||| ||||||||||| | |||||||||||||| ||| ||||| |
|
|
| T |
32823412 |
aattatggatgaattttagtctttaaaaggccgccgagtttaattatcataaatagctactattagtttttatttcttttgttggagc-ttttttggtac |
32823314 |
T |
|
| Q |
217 |
aatccgttattctactgtggcttttttggtacaa |
250 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| |
|
|
| T |
32823313 |
aatccgctattctactgtggcttttttggtacaa |
32823280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 17 - 197
Target Start/End: Complemental strand, 24783311 - 24783133
Alignment:
| Q |
17 |
tcaagacaaagcaaagaaacaaaatgagtgatgattttctttcaaataacttggttatttacattgaaaaagagattgcaagtcagtttagctcagatgc |
116 |
Q |
| |
|
|||||| ||| ||||||| ||||||||||||| |||||||| |||||| |||||||||| ||||| |||| || |||||||||||||||||||| |||| |
|
|
| T |
24783311 |
tcaagataaaacaaagaatcaaaatgagtgattattttcttgcaaatatcttggttattcacattaaaaaggacattgcaagtcagtttagctc--atgc |
24783214 |
T |
|
| Q |
117 |
aattatggatgaatttgagtctttgaagggccgctgagttcaattttcataaataactactattagtatatatttcttttg |
197 |
Q |
| |
|
||||||||||||||||||||||||||| || ||| |||||| ||||||||||||| ||||||||||| | | ||||||||| |
|
|
| T |
24783213 |
aattatggatgaatttgagtctttgaatggtcgccgagttcgattttcataaatagctactattagtttttgtttcttttg |
24783133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 179
Target Start/End: Complemental strand, 30226396 - 30226288
Alignment:
| Q |
71 |
ttatttacattgaaaaagagattgcaagtcagtttagctcagatgcaattatggatgaatttgagtctttgaagggccgctgagttcaattttcataaat |
170 |
Q |
| |
|
||||||||||||||||||| ||||||||||| || | ||| | ||| |||| |||||||||||||||||||||| ||| ||||| | |||| ||||| |
|
|
| T |
30226396 |
ttatttacattgaaaaagacattgcaagtcacttaaattcataagcagttatagatgaatttgagtctttgaaggatcgccaagttcgactttcgtaaat |
30226297 |
T |
|
| Q |
171 |
aactactat |
179 |
Q |
| |
|
| ||||||| |
|
|
| T |
30226296 |
agctactat |
30226288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 136; Significance: 5e-71; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 17 - 250
Target Start/End: Original strand, 2829780 - 2830012
Alignment:
| Q |
17 |
tcaagacaaagcaaagaaacaaaatgagtgatgattttctttcaaataacttggttatttacattgaaaaagagattgcaagtcagtttagctcagatgc |
116 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||| || |||||||| || ||||||||||| |||||||||||||| |
|
|
| T |
2829780 |
tcaagacaaaacaaagaaacaaaatgagtgatgattttctttcaaacagcttggttatctatattgaaaaggacattgcaagtcaatttagctcagatgc |
2829879 |
T |
|
| Q |
117 |
aattatggatgaatttgagtctttgaagggccgctgagttcaattttcataaataactactattagtatatatttcttttgttgtagcnnnnnnnggtac |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| |||| | ||||| ||||||||||| | |||||||||||||||||| ||||| |
|
|
| T |
2829880 |
aattatggatgaatttgagtctttgaagggccgacgagttcatttttaaaaaatagctactattagtttttatttcttttgttgtagc-ttttttggtac |
2829978 |
T |
|
| Q |
217 |
aatccgttattctactgtggcttttttggtacaa |
250 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||| |
|
|
| T |
2829979 |
aatccgctattctattgtggcttttttggtacaa |
2830012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 17 - 250
Target Start/End: Complemental strand, 304337 - 304105
Alignment:
| Q |
17 |
tcaagacaaagcaaagaaacaaaatgagtgatgattttctttcaaataacttggttatttacattgaaaaagagattgcaagtcagtttagctcagatgc |
116 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||| || |||||||| || |||| |||||| |||||||||||||| |
|
|
| T |
304337 |
tcaagacaaaacaaagaaacaaaatgagtgatgattttctttcaaacagcttggttatctatattgaaaaggacattgtaagtcaatttagctcagatgc |
304238 |
T |
|
| Q |
117 |
aattatggatgaatttgagtctttgaagggccgctgagttcaattttcataaataactactattagtatatatttcttttgttgtagcnnnnnnnggtac |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| |||| | ||||| ||||||||||| | |||||||||||||||||| ||||| |
|
|
| T |
304237 |
aattatggatgaatttgagtctttgaagggccgacgagttcatttttaaaaaatagctactattagtttttatttcttttgttgtagc-ttttttggtac |
304139 |
T |
|
| Q |
217 |
aatccgttattctactgtggcttttttggtacaa |
250 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||| |
|
|
| T |
304138 |
aatccgctattctactgtgacttttttggtacaa |
304105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 17 - 250
Target Start/End: Complemental strand, 45809692 - 45809451
Alignment:
| Q |
17 |
tcaagacaaagcaaagaaacaaaatgagtgatgattttctttcaaataacttggttatttacattgaaaaagaga----------ttgcaagtcagttta |
106 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||||| | | ||||| ||||||||| |
|
|
| T |
45809692 |
tcaagacaaaacaaagaaacaaaatgagcgatgattttctttcaaatagcttggttatttacattaaaaaaaaaaaaaaaaagtattgcaggtcagttta |
45809593 |
T |
|
| Q |
107 |
gctcagatgcaattatggatgaatttgagtctttgaagggccgctgagttcaattttcataaataactactattagtatatatttcttttgttgtagcnn |
206 |
Q |
| |
|
||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| | |||||||||||||||||| |
|
|
| T |
45809592 |
gctca-acgcaattatggatgaatttgagtctttgaagggccgccgagttcaattttcataaatagctactattagtttttatttcttttgttgtagc-t |
45809495 |
T |
|
| Q |
207 |
nnnnnggtacaatccgttattctactgtggcttttttggtacaa |
250 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
45809494 |
tttttggtacaatccgtttttctactgtgtcttttttggtacaa |
45809451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 108 - 204
Target Start/End: Complemental strand, 33335440 - 33335345
Alignment:
| Q |
108 |
ctcagatgcaattatggatgaatttgagtctttgaagggccgctgagttcaattttcataaataactactattagtatatatttcttttgttgtagc |
204 |
Q |
| |
|
|||| |||||||||| ||||||| |||||||| ||||| ||| |||||||||||||||||||| ||||||||||| | ||||| | |||||||||| |
|
|
| T |
33335440 |
ctcatatgcaattatagatgaatc-gagtctttcaagggtcgccgagttcaattttcataaatagctactattagtttttatttatattgttgtagc |
33335345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 179
Target Start/End: Original strand, 41532752 - 41532860
Alignment:
| Q |
71 |
ttatttacattgaaaaagagattgcaagtcagtttagctcagatgcaattatggatgaatttgagtctttgaagggccgctgagttcaattttcataaat |
170 |
Q |
| |
|
||||||||||||||||||| ||||||||||| || | ||| | ||| |||| |||||||||||||||||||||| ||| ||||| | |||| ||||| |
|
|
| T |
41532752 |
ttatttacattgaaaaagacattgcaagtcacttaaattcataagcagttatagatgaatttgagtctttgaaggatcgccaagttcgactttcgtaaat |
41532851 |
T |
|
| Q |
171 |
aactactat |
179 |
Q |
| |
|
| ||||||| |
|
|
| T |
41532852 |
agctactat |
41532860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 96 - 181
Target Start/End: Complemental strand, 31174280 - 31174195
Alignment:
| Q |
96 |
aagtcagtttagctcagatgcaattatggatgaatttgagtctttgaagggccgctgagttcaattttcataaataactactatta |
181 |
Q |
| |
|
|||||||||||| ||| | ||||||| |||||||||||||||||||| | || |||||| | ||||||||||||||||||||| |
|
|
| T |
31174280 |
aagtcagtttagatcatagacaattatcgatgaatttgagtctttgaaagatcgtcgagttcgactttcataaataactactatta |
31174195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 179
Target Start/End: Original strand, 5480879 - 5480987
Alignment:
| Q |
71 |
ttatttacattgaaaaagagattgcaagtcagtttagctcagatgcaattatggatgaatttgagtctttgaagggccgctgagttcaattttcataaat |
170 |
Q |
| |
|
|||||||||||||||| | ||||||||||| || | || | | ||| |||||||||||||||||||||| |||| | |||||| | |||||||||| |
|
|
| T |
5480879 |
ttatttacattgaaaagaacattgcaagtcacttaaacttataggcagttatggatgaatttgagtctttcaaggattgtcgagttcgactttcataaat |
5480978 |
T |
|
| Q |
171 |
aactactat |
179 |
Q |
| |
|
| ||||||| |
|
|
| T |
5480979 |
agctactat |
5480987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 108
Target Start/End: Complemental strand, 33335684 - 33335626
Alignment:
| Q |
50 |
attttctttcaaataacttggttatttacattgaaaaagagattgcaagtcagtttagc |
108 |
Q |
| |
|
|||||||| |||||| | |||||||||||||||||| || ||||||||||| |||||| |
|
|
| T |
33335684 |
attttcttgcaaatagttaggttatttacattgaaaaggatattgcaagtcaatttagc |
33335626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 129; Significance: 7e-67; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 17 - 250
Target Start/End: Complemental strand, 30383983 - 30383757
Alignment:
| Q |
17 |
tcaagacaaagcaaagaaacaaaatgagtgatgattttctttcaaataacttggttatttacattgaaaaagagattgcaagtcagtttagctcagatgc |
116 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||| ||| ||||||| | ||||||||||| |||||||||||||| |
|
|
| T |
30383983 |
tcaagacaaaacaaagaaacaaaatgagtgatgattttctttcaaacagcttggttatctacgttgaaaagaacattgcaagtcaatttagctcagatgc |
30383884 |
T |
|
| Q |
117 |
aattatggatgaatttgagtctttgaagggccgctgagttcaattttcataaataactactattagtatatatttcttttgttgtagcnnnnnnnggtac |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||| ||||| |
|
|
| T |
30383883 |
aattatggatgaatttgagtctttgaagggccgacgagttcaattttcataaatagctactatta------atttcttttgttgtagc-ttttttggtac |
30383791 |
T |
|
| Q |
217 |
aatccgttattctactgtggcttttttggtacaa |
250 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||| |
|
|
| T |
30383790 |
aatccgctattctattgtggcttttttggtacaa |
30383757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 17 - 250
Target Start/End: Complemental strand, 583049 - 582817
Alignment:
| Q |
17 |
tcaagacaaagcaaagaaacaaaatgagtgatgattttctttcaaataacttggttatttacattgaaaaagagattgcaagtcagtttagctcagatgc |
116 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||| ||||||||| ||||||| |||||| |
|
|
| T |
583049 |
tcaagacaaaacaatgaaacaaaatgagtgatgattttctttcaaatagcttggtcattaacattgaaaaagacattgcaagttcatttagctaagatgc |
582950 |
T |
|
| Q |
117 |
aattatggatgaatttgagtctttgaagggccgctgagttcaattttcataaataactactattagtatatatttcttttgttgtagcnnnnnnnggtac |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||||||||||||||||| || ||| ||||||| | |||||||||||||||||| | ||| |
|
|
| T |
582949 |
aattatggatgaatttgagtctttgaagggcagccgagttcaattttcataagtagctattattagtttttatttcttttgttgtagc-ttttttgatac |
582851 |
T |
|
| Q |
217 |
aatccgttattctactgtggcttttttggtacaa |
250 |
Q |
| |
|
|||||| ||||||||||||| ||||||| ||||| |
|
|
| T |
582850 |
aatccgctattctactgtggtttttttgatacaa |
582817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 17 - 250
Target Start/End: Original strand, 3886468 - 3886700
Alignment:
| Q |
17 |
tcaagacaaagcaaagaaacaaaatgagtgatgattttctttcaaataacttggttatttacattgaaaaagagattgcaagtcagtttagctcagatgc |
116 |
Q |
| |
|
|||||||||| ||| |||| |||||||||||||||||||||||||||| ||| || ||| ||||||||||||| |||||||||| ||||||| |||||| |
|
|
| T |
3886468 |
tcaagacaaaacaatgaaataaaatgagtgatgattttctttcaaatagcttagtcattaacattgaaaaagacattgcaagtccatttagctaagatgc |
3886567 |
T |
|
| Q |
117 |
aattatggatgaatttgagtctttgaagggccgctgagttcaattttcataaataactactattagtatatatttcttttgttgtagcnnnnnnnggtac |
216 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |||||||||||||| || || || ||||| | | |||||||||||||||||| | ||| |
|
|
| T |
3886568 |
aattatggatgaatttgagtctttgacgggccgccgagttcaattttcacaagtagttattattaatttttatttcttttgttgtagc-ttttttgatac |
3886666 |
T |
|
| Q |
217 |
aatccgttattctactgtggcttttttggtacaa |
250 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||| |
|
|
| T |
3886667 |
aatccgctattctactgtggtttttttggtacaa |
3886700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 33 - 250
Target Start/End: Original strand, 7640048 - 7640264
Alignment:
| Q |
33 |
aaacaaaatgagtgatgattttctttcaaataacttggttatttacattgaaaaagagattgcaagtcagtttagctcagatgcaattatggatgaattt |
132 |
Q |
| |
|
||||||||||||||||||||||| | ||||||| |||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
7640048 |
aaacaaaatgagtgatgattttcatgcaaataatttggttatttacattgaaaaggacattgcaagtcaacttagctcagatgcaattatggatgaattt |
7640147 |
T |
|
| Q |
133 |
gagtctttgaagggccgctgagttcaattttcataaataactac--tattagtatatatttcttttgttgtagcnnnnnnnggtacaatccgttattcta |
230 |
Q |
| |
|
|||| |||||| || || |||||||||||||| ||||| |||| ||||||| | ||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
7640148 |
gagtttttgaaaggtcgtcgagttcaattttcacaaatagctactatattagtttttatttcttttgttgtag--tttttttgtacaatccgctattcta |
7640245 |
T |
|
| Q |
231 |
ctgtggcttttttggtacaa |
250 |
Q |
| |
|
|||||| ||||||||||||| |
|
|
| T |
7640246 |
ctgtgg-ttttttggtacaa |
7640264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 17 - 247
Target Start/End: Original strand, 7493755 - 7493988
Alignment:
| Q |
17 |
tcaagacaaagcaaagaaacaaaatgagtgatgattttctttcaaataacttggttatttacattgaaaaagagat----tgcaagtcagtttagctcag |
112 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||||| | || |||| ||||||||||||||| |
|
|
| T |
7493755 |
tcaagacaaaacaaagaaacaaaatgagcgatgattttctttcaaatagcttggttatttacattaaaaaaaatatatattgcaggtcagtttagctcag |
7493854 |
T |
|
| Q |
113 |
atgcaattatggatgaatttgagtctttgaagggccgctgagttcaattttcataaataactactattagtatatatttcttttgttgtagcnnnnnnng |
212 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| || |||||||||||||||||||| ||||||||||| | |||||||||||||||||| | |
|
|
| T |
7493855 |
atgcaattatggataaatttgagtctttgaagggctgccgagttcaattttcataaatagctactattagtttttatttcttttgttgtagc-ttttttg |
7493953 |
T |
|
| Q |
213 |
gtacaatccgttattctactgtggcttttttggta |
247 |
Q |
| |
|
|||||||||||| |||||| ||| ||||||||||| |
|
|
| T |
7493954 |
gtacaatccgtttttctacggtgtcttttttggta |
7493988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 114 - 203
Target Start/End: Complemental strand, 33409711 - 33409622
Alignment:
| Q |
114 |
tgcaattatggatgaatttgagtctttgaagggccgctgagttcaattttcataaataactactattagtatatatttcttttgttgtag |
203 |
Q |
| |
|
|||||||||||||||||| |||||||| || | ||| || |||||||||||||||||| ||||||||||| | ||||||||||||||||| |
|
|
| T |
33409711 |
tgcaattatggatgaattcgagtctttaaaagaccgttgggttcaattttcataaatagctactattagtttttatttcttttgttgtag |
33409622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 113; Significance: 2e-57; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 17 - 204
Target Start/End: Original strand, 17172443 - 17172628
Alignment:
| Q |
17 |
tcaagacaaagcaaagaaacaaaatgagtgatgattttctttcaaataacttggttatttacattgaaaaagagattgcaagtcagtttagctcagatgc |
116 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||| || | ||||| | |||||| |||||||| |
|
|
| T |
17172443 |
tcaagacaaaataaagaaacaaaatgagtgatgattttctttcaaatagcttggttattaacatcgaaaaggacaatgcaaat--gtttaggtcagatgc |
17172540 |
T |
|
| Q |
117 |
aattatggatgaatttgagtctttgaagggccgctgagttcaattttcataaataactactattagtatatatttcttttgttgtagc |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||||||||| | |||||||||||||||||| |
|
|
| T |
17172541 |
aattatggatgaatttgagtctttgaagggccgtcgagttcaattttcataaatagccactattagtttttatttcttttgttgtagc |
17172628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 17 - 250
Target Start/End: Original strand, 8403750 - 8403982
Alignment:
| Q |
17 |
tcaagacaaagcaaagaaacaaaatgagtgatgattttctttcaaataacttggttatttacattgaaaaagagattgcaagtcagtttagctcagatgc |
116 |
Q |
| |
|
|||||| ||| |||||||||||||||| |||||||||||| |||||| ||||||| |||||||||||| | |||||||||||||||| ||| ||||| |
|
|
| T |
8403750 |
tcaagataaaacaaagaaacaaaatgatagatgattttcttgcaaatagtttggttacttacattgaaaagaacattgcaagtcagtttatctctgatgc |
8403849 |
T |
|
| Q |
117 |
aattatggatgaatttgagtctttgaagggccgctgagttcaattttcataaataactactattagtatatatttcttttgttgtagcnnnnnnnggtac |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||| | | ||||||||||||| ||| ||||| |
|
|
| T |
8403850 |
aattatggatgaatttgagtctttgaagggtcgccgagttcaattttcataaatagctactattaatttttatttcttttgttatag-ttcttttggtac |
8403948 |
T |
|
| Q |
217 |
aatccgttattctactgtggcttttttggtacaa |
250 |
Q |
| |
|
|||||| ||||||| ||||||| |||| |||||| |
|
|
| T |
8403949 |
aatccgctattctattgtggctctttttgtacaa |
8403982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 71 - 179
Target Start/End: Original strand, 12105996 - 12106104
Alignment:
| Q |
71 |
ttatttacattgaaaaagagattgcaagtcagtttagctcagatgcaattatggatgaatttgagtctttgaagggccgctgagttcaattttcataaat |
170 |
Q |
| |
|
||||||||||||||||||| ||||||||||| | | |||| | ||| |||| |||||||||||||||||||||| ||| |||||| | |||| ||||| |
|
|
| T |
12105996 |
ttatttacattgaaaaagacattgcaagtcacataaactcataagcagttatagatgaatttgagtctttgaaggatcgccgagttcgactttcgtaaat |
12106095 |
T |
|
| Q |
171 |
aactactat |
179 |
Q |
| |
|
| ||||||| |
|
|
| T |
12106096 |
agctactat |
12106104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 71 - 145
Target Start/End: Original strand, 21361245 - 21361319
Alignment:
| Q |
71 |
ttatttacattgaaaaagagattgcaagtcagtttagctcagatgcaattatggatgaatttgagtctttgaagg |
145 |
Q |
| |
|
||||||||||||||||||| |||| |||||| || | ||| | ||| |||| |||||||||||||||||||||| |
|
|
| T |
21361245 |
ttatttacattgaaaaagacattgtaagtcacttaaattcataagcagttatagatgaatttgagtctttgaagg |
21361319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 212 - 250
Target Start/End: Complemental strand, 39684679 - 39684641
Alignment:
| Q |
212 |
ggtacaatccgttattctactgtggcttttttggtacaa |
250 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
39684679 |
ggtacaatccgctattctactgtggcttttttggtacaa |
39684641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 108; Significance: 2e-54; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 17 - 250
Target Start/End: Complemental strand, 35734194 - 35733964
Alignment:
| Q |
17 |
tcaagacaaagcaaagaaacaaaatgagtgatgattttctttcaaataacttggttatttacattgaaaaagagattgcaagtcagtttagctcagatgc |
116 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||||| ||||||||| ||||||||| ||||||||||| || ||||||||||| |||||||||||||| |
|
|
| T |
35734194 |
tcaagacaaaagaaagaaacaaaatgagtgat-atttt-tttcaaatagcttggttatctacattgaaaaggacattgcaagtcaatttagctcagatgc |
35734097 |
T |
|
| Q |
117 |
aattatggatgaatttgagtctttgaagggccgctgagttcaattttcataaataactactattagtatatatttcttttgttgtagcnnnnnnnggtac |
216 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |||||||||||| |||| | ||||| ||||| | |||||||||| ||||||| ||||| |
|
|
| T |
35734096 |
aattatgaatgaatttgagtctttgaagggccgccgagttcaatttttataagcagctactgttagtttttatttcttttattgtagc-ttttttggtac |
35733998 |
T |
|
| Q |
217 |
aatccgttattctactgtggcttttttggtacaa |
250 |
Q |
| |
|
|| ||| |||| |||||| ||||||||||||||| |
|
|
| T |
35733997 |
aacccgctattttactgtagcttttttggtacaa |
35733964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 124 - 250
Target Start/End: Original strand, 40285896 - 40286022
Alignment:
| Q |
124 |
gatgaatttgagtctttgaagggccgctgagttcaattttcataaataactactattagtatatatttcttttgttgtagcnnnnnnnggtacaatccgt |
223 |
Q |
| |
|
||||||||||||| |||||| | || |||||||||||||||||||| ||||||||||| | |||||||||||||||||| |||||||||| |
|
|
| T |
40285896 |
gatgaatttgagtttttgaaagtccatcgagttcaattttcataaatagctactattagtttttatttcttttgttgtagcttttttttgtacaatccgc |
40285995 |
T |
|
| Q |
224 |
tattctactgtggcttttttggtacaa |
250 |
Q |
| |
|
|||||||| |||||||||||| ||||| |
|
|
| T |
40285996 |
tattctaccgtggcttttttgatacaa |
40286022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 179
Target Start/End: Original strand, 52724945 - 52725053
Alignment:
| Q |
71 |
ttatttacattgaaaaagagattgcaagtcagtttagctcagatgcaattatggatgaatttgagtctttgaagggccgctgagttcaattttcataaat |
170 |
Q |
| |
|
||||||||||||||||||| ||||||||||| || | ||| | ||| |||| |||||||||||||||||||||| ||| ||||| | |||| ||||| |
|
|
| T |
52724945 |
ttatttacattgaaaaagacattgcaagtcacttaaattcataagcatttatagatgaatttgagtctttgaaggatcgccaagttcgactttcgtaaat |
52725044 |
T |
|
| Q |
171 |
aactactat |
179 |
Q |
| |
|
| ||||||| |
|
|
| T |
52725045 |
agctactat |
52725053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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