View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2762_low_21 (Length: 246)
Name: NF2762_low_21
Description: NF2762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2762_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 50 - 231
Target Start/End: Complemental strand, 39076540 - 39076355
Alignment:
| Q |
50 |
aaattaacctttcaagacccaagatatataagaatgtatgaaggatata----ctctatgttatattgcttatctcatcacatttcttattctattcatt |
145 |
Q |
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| T |
39076540 |
aaattaacctttcacaactcaggatatataagaatgtatgaaggatatatatactctatattatattgcttatctcatcacatttcttattctattcatt |
39076441 |
T |
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| Q |
146 |
ccccttgattcactcaacaccatgacagaggttctagttatctcgactactacaatccaagcaacaaaacatggtgatgagaactc |
231 |
Q |
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| T |
39076440 |
ccccttgattcactcaacaccatgacagggattctagttatctcaactactacaatccaagcaaaaaaacatgttgatgacaactc |
39076355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 225
Target Start/End: Complemental strand, 7399700 - 7399595
Alignment:
| Q |
122 |
atcacatttcttattctattcattccccttgattcactcaacaccatgac---agaggttctagttatctcgactactacaatccaagcaacaaaacatg |
218 |
Q |
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||||||||||||||| | ||||||| ||| |||||||||||| ||| | |||| ||| | ||||||| |||||||||||| |||||||||| |||| |
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| T |
7399700 |
atcacatttcttattttcatcattcctctt-attcactcaacatcatcatggaagagattcaatttatctcaactactacaatcaaagcaacaaatcatg |
7399602 |
T |
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| Q |
219 |
gtgatga |
225 |
Q |
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||||||| |
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| T |
7399601 |
gtgatga |
7399595 |
T |
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