View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2762_low_22 (Length: 228)

Name: NF2762_low_22
Description: NF2762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2762_low_22
NF2762_low_22
[»] chr4 (34 HSPs)
chr4 (7-228)||(24574810-24575031)
chr4 (7-228)||(9280157-9280378)
chr4 (15-228)||(7700513-7700729)
chr4 (59-228)||(18780637-18780803)
chr4 (7-197)||(47498499-47498693)
chr4 (44-101)||(24319418-24319475)
chr4 (7-197)||(46251592-46251786)
chr4 (53-97)||(23695607-23695651)
chr4 (41-100)||(20580970-20581029)
chr4 (133-228)||(35205091-35205185)
chr4 (54-113)||(47975335-47975394)
chr4 (124-219)||(56078665-56078760)
chr4 (41-101)||(31567824-31567884)
chr4 (53-101)||(42414246-42414294)
chr4 (54-101)||(7612402-7612449)
chr4 (55-101)||(670474-670520)
chr4 (47-97)||(35747645-35747695)
chr4 (43-101)||(40436767-40436825)
chr4 (44-101)||(3757317-3757374)
chr4 (42-87)||(8738823-8738868)
chr4 (56-101)||(37602440-37602485)
chr4 (47-100)||(56078788-56078841)
chr4 (180-228)||(46251799-46251847)
chr4 (41-107)||(19615028-19615094)
chr4 (53-108)||(24859308-24859363)
chr4 (44-99)||(42430364-42430419)
chr4 (68-101)||(15726569-15726602)
chr4 (53-94)||(34277325-34277366)
chr4 (57-97)||(7612071-7612111)
chr4 (55-107)||(26161084-26161136)
chr4 (180-228)||(47498706-47498754)
chr4 (44-107)||(34723668-34723731)
chr4 (69-101)||(37325190-37325222)
chr4 (65-101)||(44720787-44720823)
[»] chr6 (15 HSPs)
chr6 (7-228)||(7607935-7608156)
chr6 (11-228)||(16705021-16705241)
chr6 (47-194)||(30395828-30395978)
chr6 (7-197)||(21946963-21947155)
chr6 (50-112)||(29174951-29175013)
chr6 (124-228)||(10517390-10517492)
chr6 (45-101)||(3900815-3900871)
chr6 (41-101)||(10386513-10386573)
chr6 (180-228)||(21946902-21946950)
chr6 (68-106)||(4463885-4463923)
chr6 (53-101)||(10484082-10484130)
chr6 (124-174)||(3900922-3900972)
chr6 (42-107)||(12853177-12853242)
chr6 (7-68)||(16110612-16110673)
chr6 (156-228)||(29175582-29175653)
[»] chr3 (21 HSPs)
chr3 (7-228)||(37282300-37282521)
chr3 (7-228)||(19636198-19636422)
chr3 (7-228)||(48973393-48973616)
chr3 (54-228)||(48082583-48082751)
chr3 (7-197)||(25706555-25706748)
chr3 (124-228)||(16215378-16215482)
chr3 (53-197)||(39716943-39717089)
chr3 (53-103)||(32055545-32055595)
chr3 (180-228)||(25706494-25706542)
chr3 (53-101)||(29283340-29283388)
chr3 (180-228)||(39717103-39717151)
chr3 (53-101)||(1030840-1030888)
chr3 (65-101)||(32033752-32033788)
chr3 (149-197)||(32055646-32055694)
chr3 (180-228)||(32055707-32055755)
chr3 (53-90)||(25393032-25393069)
chr3 (54-101)||(8530751-8530798)
chr3 (49-112)||(24480045-24480108)
chr3 (58-89)||(27166993-27167024)
chr3 (53-114)||(51580392-51580453)
chr3 (49-101)||(13936564-13936616)
[»] chr7 (19 HSPs)
chr7 (7-228)||(1576075-1576297)
chr7 (7-228)||(27392813-27393038)
chr7 (7-228)||(36482305-36482527)
chr7 (85-228)||(28694910-28695055)
chr7 (48-228)||(40305680-40305867)
chr7 (54-101)||(8080883-8080930)
chr7 (41-197)||(323269-323427)
chr7 (42-101)||(6713876-6713935)
chr7 (47-100)||(10286789-10286842)
chr7 (180-228)||(10286629-10286677)
chr7 (149-197)||(10286690-10286738)
chr7 (185-228)||(323445-323488)
chr7 (55-88)||(23236946-23236979)
chr7 (53-93)||(36582204-36582244)
chr7 (55-101)||(8937465-8937511)
chr7 (55-101)||(29987688-29987734)
chr7 (53-82)||(23222888-23222917)
chr7 (54-114)||(14242971-14243031)
chr7 (53-101)||(31279862-31279910)
[»] chr8 (31 HSPs)
chr8 (7-228)||(43619692-43619913)
chr8 (7-228)||(1265337-1265559)
chr8 (7-228)||(31126913-31127135)
chr8 (7-228)||(6345527-6345750)
chr8 (7-228)||(37948597-37948819)
chr8 (7-228)||(13471096-13471318)
chr8 (41-228)||(26720844-26721032)
chr8 (41-197)||(32907191-32907351)
chr8 (7-103)||(4602979-4603075)
chr8 (44-101)||(10182900-10182957)
chr8 (41-101)||(4267725-4267785)
chr8 (47-101)||(12522885-12522939)
chr8 (53-101)||(253305-253353)
chr8 (53-101)||(662505-662553)
chr8 (53-101)||(848303-848351)
chr8 (180-228)||(4602819-4602867)
chr8 (149-197)||(4602880-4602928)
chr8 (53-101)||(8081713-8081761)
chr8 (180-228)||(32907130-32907178)
chr8 (41-107)||(11661072-11661138)
chr8 (41-82)||(3774202-3774243)
chr8 (48-101)||(27805093-27805146)
chr8 (58-114)||(28583492-28583548)
chr8 (49-101)||(40618767-40618819)
chr8 (65-97)||(42199795-42199827)
chr8 (45-96)||(3106381-3106432)
chr8 (42-107)||(24948314-24948379)
chr8 (47-101)||(27575171-27575225)
chr8 (65-101)||(35738101-35738137)
chr8 (147-226)||(35738184-35738263)
chr8 (69-101)||(41580365-41580397)
[»] chr1 (20 HSPs)
chr1 (7-228)||(14461933-14462155)
chr1 (42-228)||(5559615-5559803)
chr1 (55-228)||(24063600-24063773)
chr1 (53-228)||(16902796-16902967)
chr1 (41-101)||(35671784-35671844)
chr1 (7-101)||(41198150-41198244)
chr1 (58-101)||(33719286-33719329)
chr1 (124-228)||(535133-535235)
chr1 (41-90)||(24615158-24615207)
chr1 (44-101)||(28655937-28655994)
chr1 (60-113)||(33111381-33111434)
chr1 (49-113)||(5133912-5133976)
chr1 (53-101)||(31088603-31088651)
chr1 (49-88)||(7784832-7784871)
chr1 (62-101)||(40211251-40211290)
chr1 (44-82)||(11619694-11619732)
chr1 (42-107)||(25347617-25347682)
chr1 (124-174)||(28655829-28655879)
chr1 (48-101)||(22173241-22173294)
chr1 (53-97)||(39193303-39193347)
[»] chr5 (19 HSPs)
chr5 (7-228)||(40987572-40987793)
chr5 (7-227)||(13555001-13555221)
chr5 (124-228)||(13521709-13521813)
chr5 (7-101)||(1495520-1495614)
chr5 (44-101)||(17342147-17342204)
chr5 (7-94)||(27111032-27111119)
chr5 (44-101)||(35449317-35449374)
chr5 (53-101)||(33996089-33996137)
chr5 (50-101)||(10416158-10416209)
chr5 (55-101)||(7946471-7946517)
chr5 (53-101)||(33745940-33745987)
chr5 (41-107)||(30672396-30672462)
chr5 (55-114)||(42715846-42715905)
chr5 (180-226)||(17035264-17035310)
chr5 (124-170)||(17342260-17342306)
chr5 (68-101)||(12443955-12443988)
chr5 (53-94)||(41061610-41061651)
chr5 (65-101)||(20209746-20209782)
chr5 (55-83)||(40044554-40044582)
[»] chr2 (12 HSPs)
chr2 (7-228)||(16672245-16672461)
chr2 (7-197)||(18511833-18512026)
chr2 (54-101)||(29772567-29772614)
chr2 (41-101)||(10997596-10997656)
chr2 (43-99)||(22596714-22596770)
chr2 (43-107)||(39989174-39989238)
chr2 (54-101)||(21351999-21352046)
chr2 (180-228)||(18511772-18511820)
chr2 (47-110)||(34440238-34440301)
chr2 (58-101)||(42295498-42295541)
chr2 (47-101)||(33441342-33441396)
chr2 (44-101)||(314124-314181)
[»] scaffold0396 (1 HSPs)
scaffold0396 (5-101)||(916-1012)
[»] scaffold0717 (1 HSPs)
scaffold0717 (42-101)||(5865-5924)


Alignment Details
Target: chr4 (Bit Score: 166; Significance: 5e-89; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 7 - 228
Target Start/End: Original strand, 24574810 - 24575031
Alignment:
Q  7 gttcggttcggtttggatgattatgttnnnnnnntccgaaccgattcgatccaaatatatgcggtttaatttggatcggtttttggatatccaaagtgta 106  Q
    |||||||||||||||||||||||||||       ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24574810 gttcggttcggtttggatgattatgttaaaaaaatccgaaccgatccgatccaaatatatgcggtttaatttggatcggtttttggatatccaaagtgta 24574909  T
Q  107 acatgtaannnnnnnnnaatattaatattactcatacacaataaaataataagtttgatacaaaatatgacacaaatttattaaaaaagttaacattaca 206  Q
    ||||||||         |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  24574910 acatgtaatttttttttaatattaatattactcatacacaataaaataataggtttgatacaaaatatgacacaaatttattaaaaaagttaacattaca 24575009  T
Q  207 caatgaaaatgattgattatat 228  Q
    ||||||||||||||||||||||    
T  24575010 caatgaaaatgattgattatat 24575031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 7 - 228
Target Start/End: Complemental strand, 9280378 - 9280157
Alignment:
Q  7 gttcggttcggtttggatgattatgttnnnnnnntccgaaccgattcgatccaaatatatgcggtttaatttggatcggtttttggatatccaaagtgta 106  Q
    |||||||||||||||||||||||||||       ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9280378 gttcggttcggtttggatgattatgttaaaaaaatccgaaccgatccgatccaaatatatgcggtttaatttggatcggtttttggatatccaaagtgta 9280279  T
Q  107 acatgtaannnnnnnnnaatattaatattactcatacacaataaaataataagtttgatacaaaatatgacacaaatttattaaaaaagttaacattaca 206  Q
    | ||||||         |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  9280278 atatgtaatttttttttaatattaatattactcatacacaataaaataataggtttgatacaaaatatgacacaaatttattaaaaaagttaacattaca 9280179  T
Q  207 caatgaaaatgattgattatat 228  Q
    ||||||||||||||||||||||    
T  9280178 caatgaaaatgattgattatat 9280157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 15 - 228
Target Start/End: Complemental strand, 7700729 - 7700513
Alignment:
Q  15 cggtttggatgattatgttnnnnnnntccgaaccgattcgatccaaatatatgcggtttaatttggatcggtttttggatatccaaagtgtaacatgtaa 114  Q
    |||||||||||||||||||       | |||| | || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  7700729 cggtttggatgattatgttaaaaaaattcgaatcaatccgatccaaatatatgcggtttaatttggatcgatttttggatatccaaagtgtaacatgtaa 7700630  T
Q  115 nnnnnnnnna---atattaatattactcatacacaataaaataataagtttgatacaaaatatgacacaaatttattaaaaaagttaacattacacaatg 211  Q
             |   ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  7700629 tttttttttattaatattaatattactcatacacaataaaataatatgtttgatacaaaatatgacacaaatttattagaaaagttaacatttcacaatg 7700530  T
Q  212 aaaatgattgattatat 228  Q
    ||||||| |||||||||    
T  7700529 aaaatgaatgattatat 7700513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 59 - 228
Target Start/End: Original strand, 18780637 - 18780803
Alignment:
Q  59 aaatatatgcggtttaatttggatcggtttttggatatccaaagtgtaacatgtaannnnnnnnnaatattaatat--tactcatacacaataaaataat 156  Q
    |||||||||||||||||||||||||  |||||||||||||||||| ||  ||||||           |||||||||  || |||||||||||||||||||    
T  18780637 aaatatatgcggtttaatttggatcaatttttggatatccaaagtatagtatgtaatttttt-----tattaatatattattcatacacaataaaataat 18780731  T
Q  157 aagtttgatacaaaatatgacacaaatttattaaaaaagttaacattacacaatgaaaatgattgattatat 228  Q
    | |||||||| |||||||| ||||||||||| ||||||| |||||||||| ||| |||||||||||||||||    
T  18780732 aggtttgatataaaatatgtcacaaatttatcaaaaaaggtaacattacagaataaaaatgattgattatat 18780803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 7 - 197
Target Start/End: Original strand, 47498499 - 47498693
Alignment:
Q  7 gttcggttcggtttggatgattatgttnnnnnnntccgaaccgattcgatccaaatatatgcggtttaatttggatcggtttttggatatccaaagtgta 106  Q
    ||||||||||||||||||||||||  |       ||||| ||||| |||||||||||||||||||||| |||||||||||||||||| |||||||||| |    
T  47498499 gttcggttcggtttggatgattattctaaaaaaatccgatccgatccgatccaaatatatgcggtttattttggatcggtttttggacatccaaagtgca 47498598  T
Q  107 acatgtaannnnnnnnnaat----attaatattactcatacacaataaaataataagtttgatacaaaatatgacacaaatttattaaaaaagtt 197  Q
    |||| |||          ||    | |||||| || ||| || |  |||||||||||||||||||||||||| |||||||| |||||||||||||    
T  47498599 acatttaatttttattttatcttaagtaatatgacacatgcatagaaaaataataagtttgatacaaaatataacacaaatgtattaaaaaagtt 47498693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 44 - 101
Target Start/End: Complemental strand, 24319475 - 24319418
Alignment:
Q  44 gaaccgattcgatccaaatatatgcggtttaatttggatcggtttttggatatccaaa 101  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  24319475 gaaccgatccgatccaaatatatgcggtttaatttggatcggtttttggatatccaaa 24319418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 7 - 197
Target Start/End: Original strand, 46251592 - 46251786
Alignment:
Q  7 gttcggttcggtttggatgattatgttnnnnnnntccgaaccgattcgatccaaatatatgcggtttaatttggatcggtttttggatatccaaagtgta 106  Q
    ||||||||||||||||||| ||||  |       ||||| ||||| |||||||||||||||||||||| |||||||||||||||||| |||||||||| |    
T  46251592 gttcggttcggtttggatggttattctaaaaaaatccgatccgatccgatccaaatatatgcggtttattttggatcggtttttggacatccaaagtgca 46251691  T
Q  107 acatgtaannnnnnnnnaat----attaatattactcatacacaataaaataataagtttgatacaaaatatgacacaaatttattaaaaaagtt 197  Q
    |||| |||          ||    | |||||| || ||| || |  |||||||||||||||||||||||||| |||||||| |||||||||||||    
T  46251692 acatttaattcttattttatcttaagtaatatgacacatgcatagaaaaataataagtttgatacaaaatataacacaaatgtattaaaaaagtt 46251786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 53 - 97
Target Start/End: Original strand, 23695607 - 23695651
Alignment:
Q  53 cgatccaaatatatgcggtttaatttggatcggtttttggatatc 97  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  23695607 cgatccaaatatatgcggtttaatttggatcggtttttggatatc 23695651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 41 - 100
Target Start/End: Complemental strand, 20581029 - 20580970
Alignment:
Q  41 tccgaaccgattcgatccaaatatatgcggtttaatttggatcggtttttggatatccaa 100  Q
    |||||||||||||||||||||||||||| || |||| |||||| ||||||||||||||||    
T  20581029 tccgaaccgattcgatccaaatatatgccgtgtaatctggatctgtttttggatatccaa 20580970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 133 - 228
Target Start/End: Original strand, 35205091 - 35205185
Alignment:
Q  133 attactcatacacaataaaataataagtttgatacaaaatatgacacaaatttattaaaaaagttaacattacacaatgaaaatgattgattatat 228  Q
    ||||| |||||||  |||| ||||||||||||| ||||||||||||||||| || ||||||| ||||||||| | ||| |||||||| ||||||||    
T  35205091 attacacatacaccgtaaagtaataagtttgatgcaaaatatgacacaaatatactaaaaaa-ttaacattatataataaaaatgatcgattatat 35205185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 54 - 113
Target Start/End: Original strand, 47975335 - 47975394
Alignment:
Q  54 gatccaaatatatgcggtttaatttggatcggtttttggatatccaaagtgtaacatgta 113  Q
    |||||||||||||||||||| ||||||||||||||||||| ||||||| || ||||||||    
T  47975335 gatccaaatatatgcggtttgatttggatcggtttttggacatccaaaatgcaacatgta 47975394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 124 - 219
Target Start/End: Complemental strand, 56078760 - 56078665
Alignment:
Q  124 aatattaatattactcatacacaataaaataataagtttgatacaaaatatgacacaaatttattaaaaaagttaacattacacaatgaaaatgat 219  Q
    |||||||||||||| ||||||| |||||||||||  || ||| ||||| || |||||||| |||||||| | |||||||||||  |||||||||||    
T  56078760 aatattaatattacacatacaccataaaataatagtttcgatgcaaaacataacacaaatgtattaaaagaattaacattacatgatgaaaatgat 56078665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 41 - 101
Target Start/End: Original strand, 31567824 - 31567884
Alignment:
Q  41 tccgaaccgattcgatccaaatatatgcggtttaatttggatcggtttttggatatccaaa 101  Q
    |||||||| ||  |||| ||||||||||||||| |||||||||||||||||||||||||||    
T  31567824 tccgaaccaatctgatctaaatatatgcggttttatttggatcggtttttggatatccaaa 31567884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 42414246 - 42414294
Alignment:
Q  53 cgatccaaatatatgcggtttaatttggatcggtttttggatatccaaa 101  Q
    |||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  42414246 cgatccaattatatgcggtttaatttggatcggtttttggatgtccaaa 42414294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 54 - 101
Target Start/End: Complemental strand, 7612449 - 7612402
Alignment:
Q  54 gatccaaatatatgcggtttaatttggatcggtttttggatatccaaa 101  Q
    ||||||||||||||| |||||||||||||| |||||||||||||||||    
T  7612449 gatccaaatatatgcagtttaatttggatcagtttttggatatccaaa 7612402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 55 - 101
Target Start/End: Original strand, 670474 - 670520
Alignment:
Q  55 atccaaatatatgcggtttaatttggatcggtttttggatatccaaa 101  Q
    |||||||||||| ||||||||||||||||| ||||||||||||||||    
T  670474 atccaaatatatacggtttaatttggatcgatttttggatatccaaa 670520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 47 - 97
Target Start/End: Complemental strand, 35747695 - 35747645
Alignment:
Q  47 ccgattcgatccaaatatatgcggtttaatttggatcggtttttggatatc 97  Q
    ||||| ||||||||||  |||||||||||||||||||||||||||||||||    
T  35747695 ccgatccgatccaaattaatgcggtttaatttggatcggtttttggatatc 35747645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 101
Target Start/End: Complemental strand, 40436825 - 40436767
Alignment:
Q  43 cgaaccgattcgatccaaatatatgcggtttaatttggatcggtttttggatatccaaa 101  Q
    ||||||||| ||||||||||||||||| |||||||| | || |||||||||||||||||    
T  40436825 cgaaccgatccgatccaaatatatgcgatttaatttagttcagtttttggatatccaaa 40436767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 101
Target Start/End: Complemental strand, 3757374 - 3757317
Alignment:
Q  44 gaaccgattcgatccaaatatatgcggtttaatttggatcggtttttggatatccaaa 101  Q
    |||||||  ||||||||||||||||||||||||||||||  |||||||||| ||||||    
T  3757374 gaaccgaaccgatccaaatatatgcggtttaatttggatgagtttttggatgtccaaa 3757317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 87
Target Start/End: Complemental strand, 8738868 - 8738823
Alignment:
Q  42 ccgaaccgattcgatccaaatatatgcggtttaatttggatcggtt 87  Q
    |||||||||| |||| ||||||||||||||||||||||||||||||    
T  8738868 ccgaaccgatccgattcaaatatatgcggtttaatttggatcggtt 8738823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 56 - 101
Target Start/End: Original strand, 37602440 - 37602485
Alignment:
Q  56 tccaaatatatgcggtttaatttggatcggtttttggatatccaaa 101  Q
    |||||||||||| ||||||||||||| |||||||||||||||||||    
T  37602440 tccaaatatatgtggtttaatttggaccggtttttggatatccaaa 37602485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 100
Target Start/End: Complemental strand, 56078841 - 56078788
Alignment:
Q  47 ccgattcgatccaaatatatgcggtttaatttggatcggtttttggatatccaa 100  Q
    ||||| ||||| |||||||||||||||||||||||||| |||||||| ||||||    
T  56078841 ccgatccgatctaaatatatgcggtttaatttggatcgatttttggacatccaa 56078788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 46251799 - 46251847
Alignment:
Q  180 aaatttattaaaaaagttaacattacacaatgaaaatgattgattatat 228  Q
    |||| |||||||||| ||||| |||||||||||||||||||||||||||    
T  46251799 aaatgtattaaaaaaattaactttacacaatgaaaatgattgattatat 46251847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 107
Target Start/End: Complemental strand, 19615094 - 19615028
Alignment:
Q  41 tccgaaccgattcgatccaaatatat-gcggtttaatttggatcggtttttggatatccaaagtgtaa 107  Q
    ||||||||||| |||||||||| ||| |||||||||||||||||| ||||||| |||||||| |||||    
T  19615094 tccgaaccgatccgatccaaat-tatcgcggtttaatttggatcgatttttggttatccaaattgtaa 19615028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 108
Target Start/End: Complemental strand, 24859363 - 24859308
Alignment:
Q  53 cgatccaaatatatgcggtttaatttggatcggtttttggatatccaaagtgtaac 108  Q
    ||||||||||  ||||||||||||||||||| |||||||||| |||||| ||||||    
T  24859363 cgatccaaattaatgcggtttaatttggatcagtttttggatgtccaaattgtaac 24859308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 99
Target Start/End: Complemental strand, 42430419 - 42430364
Alignment:
Q  44 gaaccgattcgatccaaatatatgcggtttaatttggatcggtttttggatatcca 99  Q
    |||||||  |||| ||||||||||||||||||||||||||| |||||||| |||||    
T  42430419 gaaccgaaccgatacaaatatatgcggtttaatttggatcgatttttggacatcca 42430364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 101
Target Start/End: Original strand, 15726569 - 15726602
Alignment:
Q  68 cggtttaatttggatcggtttttggatatccaaa 101  Q
    ||||||||||||||||||||||||||||||||||    
T  15726569 cggtttaatttggatcggtttttggatatccaaa 15726602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 94
Target Start/End: Complemental strand, 34277366 - 34277325
Alignment:
Q  53 cgatccaaatatatgcggtttaatttggatcggtttttggat 94  Q
    |||||||| ||||||| |||||||||||||||||||||||||    
T  34277366 cgatccaactatatgctgtttaatttggatcggtttttggat 34277325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 97
Target Start/End: Complemental strand, 7612111 - 7612071
Alignment:
Q  57 ccaaatatatgcggtttaatttggatcggtttttggatatc 97  Q
    |||||||||||| |||||||||||||| |||||||||||||    
T  7612111 ccaaatatatgcagtttaatttggatcagtttttggatatc 7612071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 107
Target Start/End: Original strand, 26161084 - 26161136
Alignment:
Q  55 atccaaatatatgcggtttaatttggatcggtttttggatatccaaagtgtaa 107  Q
    ||||||||||||| |||||||||| ||||| ||||| |||||||||| |||||    
T  26161084 atccaaatatatgtggtttaatttagatcgattttttgatatccaaaatgtaa 26161136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 47498706 - 47498754
Alignment:
Q  180 aaatttattaaaaaagttaacattacacaatgaaaatgattgattatat 228  Q
    |||| |||||||||| || || |||||||||||||||||||||||||||    
T  47498706 aaatgtattaaaaaaattgactttacacaatgaaaatgattgattatat 47498754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 107
Target Start/End: Complemental strand, 34723731 - 34723668
Alignment:
Q  44 gaaccgattcgatccaaatatat-gcggtttaatttggatcggtttttggatatccaaagtgtaa 107  Q
    |||||||| |||||||||| ||| |||||||||||||||| |||||| || |||||||| |||||    
T  34723731 gaaccgatccgatccaaat-tatcgcggtttaatttggattggttttcggttatccaaattgtaa 34723668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 101
Target Start/End: Original strand, 37325190 - 37325222
Alignment:
Q  69 ggtttaatttggatcggtttttggatatccaaa 101  Q
    |||||||||||||| ||||||||||||||||||    
T  37325190 ggtttaatttggattggtttttggatatccaaa 37325222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 44720787 - 44720823
Alignment:
Q  65 atgcggtttaatttggatcggtttttggatatccaaa 101  Q
    ||||||||||||||||||||||||| || ||||||||    
T  44720787 atgcggtttaatttggatcggttttcggttatccaaa 44720823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 162; Significance: 1e-86; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 7 - 228
Target Start/End: Original strand, 7607935 - 7608156
Alignment:
Q  7 gttcggttcggtttggatgattatgttnnnnnnntccgaaccgattcgatccaaatatatgcggtttaatttggatcggtttttggatatccaaagtgta 106  Q
    |||||||||||||||||||||||||||       ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7607935 gttcggttcggtttggatgattatgttaaaaaaatccgaaccgatccgatccaaatatatgcggtttaatttggatcggtttttggatatccaaagtgta 7608034  T
Q  107 acatgtaannnnnnnnnaatattaatattactcatacacaataaaataataagtttgatacaaaatatgacacaaatttattaaaaaagttaacattaca 206  Q
    |||||||          |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  7608035 acatgtactttttttttaatattaatattactcatacacaataaaataataggtttgatacaaaatatgacacaaatttattaaaaaagttaacattaca 7608134  T
Q  207 caatgaaaatgattgattatat 228  Q
    ||||||||||||||||||||||    
T  7608135 caatgaaaatgattgattatat 7608156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 11 - 228
Target Start/End: Original strand, 16705021 - 16705241
Alignment:
Q  11 ggttcggtttggatgattatgttnnnnnnntccgaaccgattcgatccaaatatatgcggtttaatttggatcggtttttggatatccaaagtgtaacat 110  Q
    |||||||||||||||||||||||       ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16705021 ggttcggtttggatgattatgttaaaaaaatccgaaccgatccgatccaaatatatgcggtttaatttggatcggtttttggatatccaaagtgtaacat 16705120  T
Q  111 gtaannnnnnnnn---aatattaatattactcatacacaataaaataataagtttgatacaaaatatgacacaaatttattaaaaaagttaacattacac 207  Q
    ||||            |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||    
T  16705121 gtaattttttttttttaatattaatattactcatacacaataaaataagaggtttgatacaaaatatgacacaaatttattaaaaaagttaacattacac 16705220  T
Q  208 aatgaaaatgattgattatat 228  Q
    |||||||||||||||||||||    
T  16705221 aatgaaaatgattgattatat 16705241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 47 - 194
Target Start/End: Complemental strand, 30395978 - 30395828
Alignment:
Q  47 ccgattcgatccaaatatatgcggtttaatttggatcggtttttggatatccaaagtgtaacatgtaa---nnnnnnnnnaatattaatattactcatac 143  Q
    ||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||| || ||||||            |||||||||||||  |||||    
T  30395978 ccgatccgatccaaatatatgcgatttaatttggatcgctttttggatatccaaagtgcaatatgtaatttttttttattaatattaatattatacatac 30395879  T
Q  144 acaataaaataataagtttgatacaaaatatgacacaaatttattaaaaaa 194  Q
    ||||||||  |||| ||||||| |||||||| |||||||| ||||||||||    
T  30395878 acaataaaggaataggtttgatgcaaaatataacacaaatctattaaaaaa 30395828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 7 - 197
Target Start/End: Complemental strand, 21947155 - 21946963
Alignment:
Q  7 gttcggttcggtttggatgattatgttnnnnnnntccgaaccgattcgatccaaatatatgcggtttaatttggatcggtttttggatatccaaagtgta 106  Q
    ||||||||||||||||||||||||  |       ||||| ||||| | |||||||||||||||||||| |||||||||| ||||||| |||||||||| |    
T  21947155 gttcggttcggtttggatgattattctaaaaaaatccgatccgatccaatccaaatatatgcggtttattttggatcggcttttggacatccaaagtgca 21947056  T
Q  107 acatgta--annnnnnnnnaatattaatattactcatacacaataaaataataagtttgatacaaaatatgacacaaatttattaaaaaagtt 197  Q
    |||| ||  |         |||  |||||| || ||| || |  |||||||||||||||||||||||||| |||||||| |||||||||||||    
T  21947055 acatttaatattttttattaattgtaatatgacacatgcatagaaaaataataagtttgatacaaaatataacacaaatgtattaaaaaagtt 21946963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 50 - 112
Target Start/End: Original strand, 29174951 - 29175013
Alignment:
Q  50 attcgatccaaatatatgcggtttaatttggatcggtttttggatatccaaagtgtaacatgt 112  Q
    ||||||| |||||||||||||||||||||||||||||||||| ||||||||| || |||||||    
T  29174951 attcgattcaaatatatgcggtttaatttggatcggtttttgtatatccaaaatgcaacatgt 29175013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 124 - 228
Target Start/End: Original strand, 10517390 - 10517492
Alignment:
Q  124 aatattaatattactcatacacaataaaataataagtttgatacaaaatatgacacaaatttattaaaaaagttaacattacacaatgaaaatgattgat 223  Q
    ||||||||||| |  ||||||||  ||||||||| |||||||||||||||| |||||||| |||||||||  |||||||| || ||| |||||| | |||    
T  10517390 aatattaatatcatacatacacatcaaaataatatgtttgatacaaaatataacacaaatatattaaaaa--ttaacatttcataataaaaatggtcgat 10517487  T
Q  224 tatat 228  Q
    |||||    
T  10517488 tatat 10517492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 45 - 101
Target Start/End: Original strand, 3900815 - 3900871
Alignment:
Q  45 aaccgattcgatccaaatatatgcggtttaatttggatcggtttttggatatccaaa 101  Q
    ||||||| |||||||||||||| | ||||||||||||||| ||||||||||||||||    
T  3900815 aaccgatccgatccaaatatattcagtttaatttggatcgatttttggatatccaaa 3900871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 41 - 101
Target Start/End: Complemental strand, 10386573 - 10386513
Alignment:
Q  41 tccgaaccgattcgatccaaatatatgcggtttaatttggatcggtttttggatatccaaa 101  Q
    |||| ||||||  ||||||||||||||| |||||||||||||| |||||||||||||||||    
T  10386573 tccggaccgatctgatccaaatatatgcagtttaatttggatctgtttttggatatccaaa 10386513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 180 - 228
Target Start/End: Complemental strand, 21946950 - 21946902
Alignment:
Q  180 aaatttattaaaaaagttaacattacacaatgaaaatgattgattatat 228  Q
    |||| |||||||||| |||||| ||||||||||||||||||||||||||    
T  21946950 aaatgtattaaaaaaattaacactacacaatgaaaatgattgattatat 21946902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 68 - 106
Target Start/End: Original strand, 4463885 - 4463923
Alignment:
Q  68 cggtttaatttggatcggtttttggatatccaaagtgta 106  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  4463885 cggtttaatttggatcggtttttggatatccaaaatgta 4463923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 10484082 - 10484130
Alignment:
Q  53 cgatccaaatatatgcggtttaatttggatcggtttttggatatccaaa 101  Q
    ||||||||||||||||||||||||||  ||||| ||||| |||||||||    
T  10484082 cgatccaaatatatgcggtttaatttaaatcggattttgaatatccaaa 10484130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 174
Target Start/End: Original strand, 3900922 - 3900972
Alignment:
Q  124 aatattaatattactcatacacaataaaataataagtttgatacaaaatat 174  Q
    |||||||||||||| || ||||  |||||||||||||||||| ||||||||    
T  3900922 aatattaatattacacaaacacggtaaaataataagtttgatgcaaaatat 3900972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 107
Target Start/End: Original strand, 12853177 - 12853242
Alignment:
Q  42 ccgaaccgattcgatccaaatatat-gcggtttaatttggatcggtttttggatatccaaagtgtaa 107  Q
    ||||||||||  ||||||||| ||| ||||||||||||||||||||||| || |||||||| |||||    
T  12853177 ccgaaccgatctgatccaaat-tatcgcggtttaatttggatcggttttcggttatccaaattgtaa 12853242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 68
Target Start/End: Complemental strand, 16110673 - 16110612
Alignment:
Q  7 gttcggttcggtttggatgattatgttnnnnnnntccgaaccgattcgatccaaatatatgc 68  Q
    |||||||| ||||||||||||||| ||       ||||| ||||||||||||||||||||||    
T  16110673 gttcggtttggtttggatgattattttaaaaaaatccgatccgattcgatccaaatatatgc 16110612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 228
Target Start/End: Original strand, 29175582 - 29175653
Alignment:
Q  156 taagtttgatacaaaatatgacacaaatttattaaaaaagttaacattacacaatgaaaatgattgattatat 228  Q
    ||||||||||  ||||||| |||||||| | |||||||| ||||||||| | ||||||||||||  |||||||    
T  29175582 taagtttgatgtaaaatataacacaaatattttaaaaaa-ttaacattatagaatgaaaatgatcaattatat 29175653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 162; Significance: 1e-86; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 7 - 228
Target Start/End: Original strand, 37282300 - 37282521
Alignment:
Q  7 gttcggttcggtttggatgattatgttnnnnnnntccgaaccgattcgatccaaatatatgcggtttaatttggatcggtttttggatatccaaagtgta 106  Q
    |||||||||||||||||||||||||||       ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  37282300 gttcggttcggtttggatgattatgttaaaaaaatccgaaccgatccgatccaaatatatgcggtttaatttggattggtttttggatatccaaagtgta 37282399  T
Q  107 acatgtaannnnnnnnnaatattaatattactcatacacaataaaataataagtttgatacaaaatatgacacaaatttattaaaaaagttaacattaca 206  Q
    ||||||||         |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  37282400 acatgtaatttttttttaatattaatattactcatacacaataaaataataggtttgatacaaaatatgacacaaatttattaaaaaagttaacattaca 37282499  T
Q  207 caatgaaaatgattgattatat 228  Q
    ||||||||||||||||||||||    
T  37282500 caatgaaaatgattgattatat 37282521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 7 - 228
Target Start/End: Original strand, 19636198 - 19636422
Alignment:
Q  7 gttcggttcggtttggatgattatgttnnnnnnntccgaaccgattcgatccaaatatatgcggtttaatttggatcggtttttggatatccaaagtgta 106  Q
    |||||||||||||||||||||||||||       ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  19636198 gttcggttcggtttggatgattatgttaaaaaaatccgaaccgatccgatccaaatatatgcggtttaatttggatcgatttttggatatccaaagtgta 19636297  T
Q  107 acatgtaannnnnnnnn---aatattaatattactcatacacaataaaataataagtttgatacaaaatatgacacaaatttattaaaaaagttaacatt 203  Q
    ||||||||            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  19636298 acatgtaatttttttttgttaatattaatattactcatacacaataaaataataggtttgatacaaaatatgacacaaatttattaaaaaagttaacatt 19636397  T
Q  204 acacaatgaaaatgattgattatat 228  Q
    |||||||||||||||||||||||||    
T  19636398 acacaatgaaaatgattgattatat 19636422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 7 - 228
Target Start/End: Original strand, 48973393 - 48973616
Alignment:
Q  7 gttcggttcggtttggatgattatgttnnnnnnntccgaaccgattcgatccaaatatatgcggtttaatttggatcggtttttggatatccaaagtgta 106  Q
    ||||| |||||||||||||||||||||        |||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||    
T  48973393 gttcgtttcggtttggatgattatgttaaaaaac-ccgaaccgatccgatctaaatatatgcggtttaatttggatcggttttttgatatccaaagtgta 48973491  T
Q  107 acatgtaannnnnnnnna---atattaatattactcatacacaataaaataataagtttgatacaaaatatgacacaaatttattaaaaaagttaacatt 203  Q
    ||||||||         |   |||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  48973492 acatgtaatttttttttattaatattaatattactcatacacattaaaataatagttttgatacaaaatatgacacaaatttattaaaaaagttaacatt 48973591  T
Q  204 acacaatgaaaatgattgattatat 228  Q
    |||||||||||||||||||||||||    
T  48973592 acacaatgaaaatgattgattatat 48973616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 54 - 228
Target Start/End: Original strand, 48082583 - 48082751
Alignment:
Q  54 gatccaaatatatgcggtttaatttggatcggtttttggatatccaaagtgtaacatgtaannnnnnnnnaatattaatattactcatacacaataaaat 153  Q
    |||||||| |||||||||||||||||||||| |||||||||||||||| |  |||||||||           |||||||||||| |||||||| ||||||    
T  48082583 gatccaaaaatatgcggtttaatttggatcgatttttggatatccaaa-tacaacatgtaattttttt----tattaatattacacatacacagtaaaat 48082677  T
Q  154 aataagtttgatacaaaatatgacacaaatttattaaaaaagttaacattacacaatgaaaatgattgattatat 228  Q
    |||| | |||||  ||||||| |||||||| ||||||||||  |||||||||| ||||||||| || ||||||||    
T  48082678 aataggcttgatgtaaaatataacacaaatctattaaaaaa-ataacattacataatgaaaattatcgattatat 48082751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 7 - 197
Target Start/End: Complemental strand, 25706748 - 25706555
Alignment:
Q  7 gttcggttcggtttggatgattatgttnnnnnnntccgaaccgattcgatccaaatatatgcggtttaatttggatcggtttttggatatccaaagtgta 106  Q
    ||||||||||||||||||||||||  |       ||||| ||| | || ||||||||||||||||||| ||||||||  |||||||| |||||||||| |    
T  25706748 gttcggttcggtttggatgattattctaaaaaaatccgatccggtccggtccaaatatatgcggtttattttggatcaatttttggacatccaaagtgca 25706649  T
Q  107 acatgtaannnnnnnnna---atattaatattactcatacacaataaaataataagtttgatacaaaatatgacacaaatttattaaaaaagtt 197  Q
    |||| |||         |   ||||||||||||| ||| || |  ||||||||| |||||||||||||||| |||||||| |||||||||||||    
T  25706648 acatttaatttttttttattaatattaatattacacatgcatagaaaaataataggtttgatacaaaatataacacaaatgtattaaaaaagtt 25706555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 124 - 228
Target Start/End: Original strand, 16215378 - 16215482
Alignment:
Q  124 aatattaatattactcatacacaataaaataataagtttgatacaaaatatgacacaaatttattaaaaaagttaacattacacaatgaaaatgattgat 223  Q
    |||||||||||||| ||||||   || ||||||| ||||||| |||||||| ||| |||| |||| ||||| ||||||||||| |||||||||||| |||    
T  16215378 aatattaatattacacatacaaggtagaataatatgtttgatgcaaaatataacataaatatatttaaaaaattaacattacataatgaaaatgatcgat 16215477  T
Q  224 tatat 228  Q
    |||||    
T  16215478 tatat 16215482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 53 - 197
Target Start/End: Original strand, 39716943 - 39717089
Alignment:
Q  53 cgatccaaatatatgcggtttaatttggatcggtttttggatatccaaagtgtaacatgtaannnnnnnnn--aatattaatattactcatacacaataa 150  Q
    |||||||||||||||||||||| ||||||||| |||||||| ||||||| || ||||| | |           |||||||||||||| ||| || |  ||    
T  39716943 cgatccaaatatatgcggtttattttggatcgatttttggacatccaaaatggaacatttcattttttttattaatattaatattacacatgcatagaaa 39717042  T
Q  151 aataataagtttgatacaaaatatgacacaaatttattaaaaaagtt 197  Q
    ||||||| |||||||||||||||| |||||||| |||||||||||||    
T  39717043 aataataggtttgatacaaaatataacacaaatgtattaaaaaagtt 39717089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 53 - 103
Target Start/End: Original strand, 32055545 - 32055595
Alignment:
Q  53 cgatccaaatatatgcggtttaatttggatcggtttttggatatccaaagt 103  Q
    |||||||||||||||||||||| |||||||||||||||||| |||||||||    
T  32055545 cgatccaaatatatgcggtttattttggatcggtttttggacatccaaagt 32055595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 180 - 228
Target Start/End: Complemental strand, 25706542 - 25706494
Alignment:
Q  180 aaatttattaaaaaagttaacattacacaatgaaaatgattgattatat 228  Q
    |||| |||||||||| |||||||||||||||||||||||||||||||||    
T  25706542 aaatgtattaaaaaaattaacattacacaatgaaaatgattgattatat 25706494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 29283388 - 29283340
Alignment:
Q  53 cgatccaaatatatgcggtttaatttggatcggtttttggatatccaaa 101  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||    
T  29283388 cgatccaaatataaacggtttaatttggatcggtttttggatatccaaa 29283340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 39717103 - 39717151
Alignment:
Q  180 aaatttattaaaaaagttaacattacacaatgaaaatgattgattatat 228  Q
    |||| |||||||||| |||||||||||||||||||||||||||||||||    
T  39717103 aaatgtattaaaaaaattaacattacacaatgaaaatgattgattatat 39717151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 1030888 - 1030840
Alignment:
Q  53 cgatccaaatatatgcggtttaatttggatcggtttttggatatccaaa 101  Q
    |||||||| ||||||||||||||||||||||| ||||||||| ||||||    
T  1030888 cgatccaattatatgcggtttaatttggatcgatttttggatgtccaaa 1030840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 32033752 - 32033788
Alignment:
Q  65 atgcggtttaatttggatcggtttttggatatccaaa 101  Q
    |||||||||||||||||||||||||||||||||||||    
T  32033752 atgcggtttaatttggatcggtttttggatatccaaa 32033788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 149 - 197
Target Start/End: Original strand, 32055646 - 32055694
Alignment:
Q  149 aaaataataagtttgatacaaaatatgacacaaatttattaaaaaagtt 197  Q
    |||||||||||||||||||| ||||| |||||||| |||||||||||||    
T  32055646 aaaataataagtttgatacagaatataacacaaatgtattaaaaaagtt 32055694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 32055707 - 32055755
Alignment:
Q  180 aaatttattaaaaaagttaacattacacaatgaaaatgattgattatat 228  Q
    |||| |||||||||| ||||| |||||||||||||||||||||||||||    
T  32055707 aaatgtattaaaaaaattaactttacacaatgaaaatgattgattatat 32055755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 90
Target Start/End: Complemental strand, 25393069 - 25393032
Alignment:
Q  53 cgatccaaatatatgcggtttaatttggatcggttttt 90  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  25393069 cgatccaaatatatgcggtttaatttgtatcggttttt 25393032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 101
Target Start/End: Original strand, 8530751 - 8530798
Alignment:
Q  54 gatccaaatatatgcggtttaatttggatcggtttttggatatccaaa 101  Q
    |||||||||  |||| ||||||||||||||||||||||||| ||||||    
T  8530751 gatccaaattaatgcagtttaatttggatcggtttttggatgtccaaa 8530798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 112
Target Start/End: Complemental strand, 24480108 - 24480045
Alignment:
Q  49 gattcgatccaaatatatgcggtttaatttggatcggtttttggatatccaaagtgtaacatgt 112  Q
    |||||||| ||||||||||  ||||||||||||||| |||| ||| ||||||| || |||||||    
T  24480108 gattcgattcaaatatatgttgtttaatttggatcgattttaggacatccaaaatgcaacatgt 24480045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 89
Target Start/End: Original strand, 27166993 - 27167024
Alignment:
Q  58 caaatatatgcggtttaatttggatcggtttt 89  Q
    ||||||||||||||||||||||||||||||||    
T  27166993 caaatatatgcggtttaatttggatcggtttt 27167024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 114
Target Start/End: Original strand, 51580392 - 51580453
Alignment:
Q  53 cgatccaaatatatgcggtttaatttggatcggtttttggatatccaaagtgtaacatgtaa 114  Q
    ||||| ||||||||||  ||||||||| |||  |||||||||||||||| || |||||||||    
T  51580392 cgatctaaatatatgcaatttaatttgtatcaatttttggatatccaaaatgcaacatgtaa 51580453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 101
Target Start/End: Complemental strand, 13936616 - 13936564
Alignment:
Q  49 gattcgatccaaatatatgcggtttaatttggatcggtttttggatatccaaa 101  Q
    ||||||||||||||  ||| ||||||||||| |||| ||||||||||| ||||    
T  13936616 gattcgatccaaattaatgtggtttaatttgaatcgatttttggatattcaaa 13936564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 159; Significance: 8e-85; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 7 - 228
Target Start/End: Complemental strand, 1576297 - 1576075
Alignment:
Q  7 gttcggttcggtttggatgattatgttnnnnnnntccgaaccgattcgatccaaatatatgcggtttaatttggatcggtttttggatatccaaagtgta 106  Q
    |||||||||||||||||||||||||||       ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1576297 gttcggttcggtttggatgattatgttaaaaaaatccgaaccgatccgatccaaatatatgcggtttaatttggatcggtttttggatatccaaagtgta 1576198  T
Q  107 acatgtaannnnnnnnn-aatattaatattactcatacacaataaaataataagtttgatacaaaatatgacacaaatttattaaaaaagttaacattac 205  Q
    ||||||||          |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  1576197 acatgtaattttttttttaatattaatattactcatacacaataaaataataggtttgatacaaaatatgacacaaatttattaaaaaagttaacattac 1576098  T
Q  206 acaatgaaaatgattgattatat 228  Q
    |||||||||||||||||||||||    
T  1576097 acaatgaaaatgattgattatat 1576075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 7 - 228
Target Start/End: Complemental strand, 27393038 - 27392813
Alignment:
Q  7 gttcggttcggtttggatgattatgttnnnnnnntccgaaccgattcgatccaaatatatgcggtttaatttggatcggtttttggatatccaaagtgta 106  Q
    |||||||||||||||||||||||||||       ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27393038 gttcggttcggtttggatgattatgttaaaaaaatccgaaccgatccgatccaaatatatgcggtttaatttggatcggtttttggatatccaaagtgta 27392939  T
Q  107 acatgtaannnnnnnnn----aatattaatattactcatacacaataaaataataagtttgatacaaaatatgacacaaatttattaaaaaagttaacat 202  Q
    ||||||||             |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  27392938 acatgtaatttttttttttttaatattaatattactcatacacaataaaataataggtttgatacaaaatatgacacaaatttattaaaatagttaacat 27392839  T
Q  203 tacacaatgaaaatgattgattatat 228  Q
    |||||||| |||||||||||||||||    
T  27392838 tacacaataaaaatgattgattatat 27392813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 7 - 228
Target Start/End: Original strand, 36482305 - 36482527
Alignment:
Q  7 gttcggttcggtttggatgattatgttnnnnnnntccgaaccgattcgatccaaatatatgcggtttaatttggatcggtttttggatatccaaagtgta 106  Q
    |||||||||||||||||||||||||||       ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  36482305 gttcggttcggtttggatgattatgttaaaaaaatccgaaccgatccgatccaaatatatgcggtttaatttggatcggttttttgatatccaaagtgta 36482404  T
Q  107 acatgtaannnnnnnnn--aatattaatattactcatacacaataaaataataagtttgatacaaaatatgacacaaatttattaaaaaagttaacatta 204  Q
    ||||||||           |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||    
T  36482405 acatgtaattttttttattaatattaatattactcatacacaataaaataataggtttgatacaaaagatgacacaaatttatt-aaaaagttaacatta 36482503  T
Q  205 cacaatgaaaatgattgattatat 228  Q
    ||||||||||||||||||||||||    
T  36482504 cacaatgaaaatgattgattatat 36482527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 85 - 228
Target Start/End: Complemental strand, 28695055 - 28694910
Alignment:
Q  85 gtttttggatatccaaagtgtaacatgtaannnnnnnnn--aatattaatattactcatacacaataaaataataagtttgatacaaaatatgacacaaa 182  Q
    ||||||||||||||||||||||||||||||           |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  28695055 gtttttggatatccaaagtgtaacatgtaattttttttattaatattaatattactcatacgcaataaaataataggtttgatacaaaatatgacacaaa 28694956  T
Q  183 tttattaaaaaagttaacattacacaatgaaaatgattgattatat 228  Q
    |||||||||||||||||||||||||||| |||||||||||||||||    
T  28694955 tttattaaaaaagttaacattacacaataaaaatgattgattatat 28694910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 48 - 228
Target Start/End: Complemental strand, 40305867 - 40305680
Alignment:
Q  48 cgattcgatccaaatatatgcggtttaatttggatcggtttttggatatccaaagtgtaacatgtaannnnnnnnn--------aatattaatattactc 139  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||| |||||| ||||| |||                 |||||||||||||| |    
T  40305867 cgattcgatccaaatatatgcggtttaatttggatcaatttttggatatcaaaagtgcaacatctaattttttttattaatattaatattaatattacac 40305768  T
Q  140 atacacaataaaataataagtttgatacaaaatatgacacaaatttattaaaaaagttaacattacacaatgaaaatgattgattatat 228  Q
    |||||||||||||||||| ||||||| |||||||| ||| ||||||||||||||| ||||||||||||||||||||| || ||||||||    
T  40305767 atacacaataaaataataggtttgatgcaaaatataacataaatttattaaaaaa-ttaacattacacaatgaaaataatcgattatat 40305680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 54 - 101
Target Start/End: Complemental strand, 8080930 - 8080883
Alignment:
Q  54 gatccaaatatatgcggtttaatttggatcggtttttggatatccaaa 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  8080930 gatccaaatatatgcggtttaatttggatcggtttttggatatccaaa 8080883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 41 - 197
Target Start/End: Original strand, 323269 - 323427
Alignment:
Q  41 tccgaaccgattcgatccaaatatatgcggtttaatttggatcggtttttggatatccaaagtgtaacatgtaannnnnnnnnaat--attaatattact 138  Q
    ||||| ||||| |||||||||||||||||||||| ||||||||| |||||||| ||||| |||| ||||| |||           |  | |||||| ||     
T  323269 tccgatccgatccgatccaaatatatgcggtttattttggatcgatttttggacatccagagtgcaacatttaatttttttaattttaagtaatatgaca 323368  T
Q  139 catacacaataaaataataagtttgatacaaaatatgacacaaatttattaaaaaagtt 197  Q
    ||| || |  |||||||||||||||||||||||||| |||||||| |||||||||||||    
T  323369 catgcatagaaaaataataagtttgatacaaaatataacacaaatgtattaaaaaagtt 323427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 42 - 101
Target Start/End: Original strand, 6713876 - 6713935
Alignment:
Q  42 ccgaaccgattcgatccaaatatatgcggtttaatttggatcggtttttggatatccaaa 101  Q
    ||||||||||  |||||||||||| |||||||||||||||||||||||||||| ||||||    
T  6713876 ccgaaccgatctgatccaaatatacgcggtttaatttggatcggtttttggatgtccaaa 6713935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 47 - 100
Target Start/End: Complemental strand, 10286842 - 10286789
Alignment:
Q  47 ccgattcgatccaaatatatgcggtttaatttggatcggtttttggatatccaa 100  Q
    ||||| |||||||||||||||||||||| |||||||||||||||||| ||||||    
T  10286842 ccgatccgatccaaatatatgcggtttattttggatcggtttttggacatccaa 10286789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 180 - 228
Target Start/End: Complemental strand, 10286677 - 10286629
Alignment:
Q  180 aaatttattaaaaaagttaacattacacaatgaaaatgattgattatat 228  Q
    |||| |||||||||| ||||| |||||||||||||||||||||||||||    
T  10286677 aaatgtattaaaaaaattaactttacacaatgaaaatgattgattatat 10286629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 149 - 197
Target Start/End: Complemental strand, 10286738 - 10286690
Alignment:
Q  149 aaaataataagtttgatacaaaatatgacacaaatttattaaaaaagtt 197  Q
    |||||||||||||||||||||||||| ||| |||| |||||||||||||    
T  10286738 aaaataataagtttgatacaaaatataacaaaaatgtattaaaaaagtt 10286690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 228
Target Start/End: Original strand, 323445 - 323488
Alignment:
Q  185 tattaaaaaagttaacattacacaatgaaaatgattgattatat 228  Q
    |||||||||| ||||| |||||||||||||||||||||||||||    
T  323445 tattaaaaaaattaactttacacaatgaaaatgattgattatat 323488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 88
Target Start/End: Original strand, 23236946 - 23236979
Alignment:
Q  55 atccaaatatatgcggtttaatttggatcggttt 88  Q
    ||||||||||||||||||||||||||||||||||    
T  23236946 atccaaatatatgcggtttaatttggatcggttt 23236979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 93
Target Start/End: Original strand, 36582204 - 36582244
Alignment:
Q  53 cgatccaaatatatgcggtttaatttggatcggtttttgga 93  Q
    ||||||||||||||||| |||||||||||||| ||||||||    
T  36582204 cgatccaaatatatgcgttttaatttggatcgatttttgga 36582244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 101
Target Start/End: Original strand, 8937465 - 8937511
Alignment:
Q  55 atccaaatatatgcggtttaatttggatcggtttttggatatccaaa 101  Q
    |||||||||||||| |||||||||||||| |||| ||||||| ||||    
T  8937465 atccaaatatatgcagtttaatttggatcagtttctggatatacaaa 8937511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 101
Target Start/End: Original strand, 29987688 - 29987734
Alignment:
Q  55 atccaaatatatgcggtttaatttggatcggtttttggatatccaaa 101  Q
    ||||||||||||| |||||||||||||| |||||| ||||| |||||    
T  29987688 atccaaatatatgtggtttaatttggattggttttaggatacccaaa 29987734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 82
Target Start/End: Original strand, 23222888 - 23222917
Alignment:
Q  53 cgatccaaatatatgcggtttaatttggat 82  Q
    ||||||||||||||||||||||||||||||    
T  23222888 cgatccaaatatatgcggtttaatttggat 23222917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 114
Target Start/End: Original strand, 14242971 - 14243031
Alignment:
Q  54 gatccaaatatatgcggtttaatttggatcggtttttggatatccaaagtgtaacatgtaa 114  Q
    ||||||||| |||||| |||| |||||||  ||||| ||||||||||| || |||||||||    
T  14242971 gatccaaatgtatgcgatttattttggattagttttcggatatccaaaatgcaacatgtaa 14243031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 31279862 - 31279910
Alignment:
Q  53 cgatccaaatatatgcggtttaatttggatcggtttttggatatccaaa 101  Q
    ||||||||| ||||||| || ||||||||||| |||||||| |||||||    
T  31279862 cgatccaaacatatgcgattgaatttggatcgatttttggacatccaaa 31279910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 158; Significance: 3e-84; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 7 - 228
Target Start/End: Original strand, 43619692 - 43619913
Alignment:
Q  7 gttcggttcggtttggatgattatgttnnnnnnntccgaaccgattcgatccaaatatatgcggtttaatttggatcggtttttggatatccaaagtgta 106  Q
    |||||||||||||||||||||||||||       |  |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43619692 gttcggttcggtttggatgattatgttaaaaaaatttgaaccgattcgacccaaatatatgcggtttaatttggatcggtttttggatatccaaagtgta 43619791  T
Q  107 acatgtaannnnnnnnnaatattaatattactcatacacaataaaataataagtttgatacaaaatatgacacaaatttattaaaaaagttaacattaca 206  Q
    ||||||||         |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  43619792 acatgtaatttttttttaatattaatattactcatacacaataaaataataggtttgatacaaaatatgacacaaatttattaaaaaagttaacattaca 43619891  T
Q  207 caatgaaaatgattgattatat 228  Q
    ||||||||||||||||||||||    
T  43619892 caatgaaaatgattgattatat 43619913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 7 - 228
Target Start/End: Complemental strand, 1265559 - 1265337
Alignment:
Q  7 gttcggttcggtttggatgattatgttnnnnnnntccgaaccgattcgatccaaatatatgcggtttaatttggatcggtttttggatatccaaagtgta 106  Q
    |||||||||||||||||||||||||||       || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1265559 gttcggttcggtttggatgattatgttaaaaaaatctgaaccgatccgatccaaatatatgcggtttaatttggatcggtttttggatatccaaagtgta 1265460  T
Q  107 acatgtaannnnnnnnn-aatattaatattactcatacacaataaaataataagtttgatacaaaatatgacacaaatttattaaaaaagttaacattac 205  Q
    ||||||||          |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  1265459 acatgtaattttttttttaatattaatattactcatacacaataaaataataggtttgatacaaaatatgacacaaatttattaaaaaagttaacattac 1265360  T
Q  206 acaatgaaaatgattgattatat 228  Q
    |||||||||||||||||||||||    
T  1265359 acaatgaaaatgattgattatat 1265337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 7 - 228
Target Start/End: Original strand, 31126913 - 31127135
Alignment:
Q  7 gttcggttcggtttggatgattatgttnnnnnnntccgaaccgattcgatccaaatatatgcggtttaatttggatcggtttttggatatccaaagtgta 106  Q
    |||||||||||||||||||||||||||       || |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31126913 gttcggttcggtttggatgattatgttaaaaaaatctgaaccgatccgacccaaatatatgcggtttaatttggatcggtttttggatatccaaagtgta 31127012  T
Q  107 acatgtaannnnnnnnn-aatattaatattactcatacacaataaaataataagtttgatacaaaatatgacacaaatttattaaaaaagttaacattac 205  Q
    ||||||||          |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  31127013 acatgtaattttttttttaatattaatattactcatacacaataaaataataggtttgatacaaaatatgacacaaatttattaaaaaagttaacattac 31127112  T
Q  206 acaatgaaaatgattgattatat 228  Q
    |||||||||||||||||||||||    
T  31127113 acaatgaaaatgattgattatat 31127135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 7 - 228
Target Start/End: Complemental strand, 6345750 - 6345527
Alignment:
Q  7 gttcggttcggtttggatgattatgttnnnnnnntccgaaccgattcgatccaaatatatgcggtttaatttggatcggtttttggatatccaaagtgta 106  Q
    |||||||||||||||||||||||||||       ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6345750 gttcggttcggtttggatgattatgttaaaaaaatccgaaccgatccgatccaaatatatgcggtttaatttggatcggtttttggatatccaaagtgta 6345651  T
Q  107 acatgtaannnnnnnnn--aatattaatattactcatacacaataaaataataagtttgatacaaaatatgacacaaatttattaaaaaagttaacatta 204  Q
    ||||||||           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||    
T  6345650 acatgtaattttttttttaaatattaatattactcatacacaataaaataataggtttgatacaaaatatgacacaaatttatttaaaaagttaacatta 6345551  T
Q  205 cacaatgaaaatgattgattatat 228  Q
    |||||| |||||||||||||||||    
T  6345550 cacaataaaaatgattgattatat 6345527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 7 - 228
Target Start/End: Original strand, 37948597 - 37948819
Alignment:
Q  7 gttcggttcggtttggatgattatgttnnnnnnntccgaaccgattcgatccaaatatatgcggtttaatttggatcggtttttggatatccaaagtgta 106  Q
    |||||||||||||||||||||||||||       ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37948597 gttcggttcggtttggatgattatgttaaaaaaatccgaaccgatccgatccaaatatatgcggtttaatttggatcggtttttggatatccaaagtgta 37948696  T
Q  107 acatgtaannnnnnnnn-aatattaatattactcatacacaataaaataataagtttgatacaaaatatgacacaaatttattaaaaaagttaacattac 205  Q
    ||||||||          |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  37948697 acatgtaattttttttttaatattaatattactcatacacaataaaataataggtttgatacaaaatatgacacaaatttatttaaaaagttaacattac 37948796  T
Q  206 acaatgaaaatgattgattatat 228  Q
    || || |||||||||||||||||    
T  37948797 acgataaaaatgattgattatat 37948819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 7 - 228
Target Start/End: Complemental strand, 13471318 - 13471096
Alignment:
Q  7 gttcggttcggtttggatgattatgttnnnnnnntccgaaccgattcgatccaaatatatgcggtttaatttggatcggtttttggatatccaaagtgta 106  Q
    |||||||||||||| ||| ||||||||       | ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  13471318 gttcggttcggtttagataattatgttaaaaaaattcgaaccgatccgatccaaatatatgcggtttaatttggatcggtttttgaatatccaaagtgta 13471219  T
Q  107 acatgtaannnnnnnnn-aatattaatattactcatacacaataaaataataagtttgatacaaaatatgacacaaatttattaaaaaagttaacattac 205  Q
    ||||||||          |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  13471218 acatgtaatatttttattaatattaatattactcgtacacaataaaataataggtttgatacaaaatatgacacaaatttattaaaaaagttaacattac 13471119  T
Q  206 acaatgaaaatgattgattatat 228  Q
    ||||| |||||||||||||||||    
T  13471118 acaataaaaatgattgattatat 13471096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 41 - 228
Target Start/End: Original strand, 26720844 - 26721032
Alignment:
Q  41 tccgaaccgattcgatccaaatatatgcggtttaatttggatcggtttttggatatccaaagtgtaacatgtaannnnnnnnna-atattaatattactc 139  Q
    |||||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           |||||||||||||||    
T  26720844 tccgaatcgatctgatccaaatatatgcggtttaatttggatcggtttttggatatccaaagtgtaacatgtaattttttttattatattaatattactc 26720943  T
Q  140 atacacaataaaataataagtttgatacaaaatatgacacaaatttattaaaaaagttaacattacacaatgaaaatgattgattatat 228  Q
    |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||    
T  26720944 atacacaataaaataataggtttgatacaaagtatgacacaaatttattaaaaaagttaacattacacaatgaaaataatcgattatat 26721032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 41 - 197
Target Start/End: Complemental strand, 32907351 - 32907191
Alignment:
Q  41 tccgaaccgattcgatccaaatatatgcggtttaatttggatcggtttttggatatccaaagtgtaacatgtaannnnnnnnnaat----attaatatta 136  Q
    ||||| ||||| |||||||||||||||||||||| |||||||||||||||||| |||||||||  ||||| |||          ||    | |||||| |    
T  32907351 tccgatccgatccgatccaaatatatgcggtttattttggatcggtttttggacatccaaagtacaacatttaattttttttttattttaagtaatatga 32907252  T
Q  137 ctcatacacaataaaataataagtttgatacaaaatatgacacaaatttattaaaaaagtt 197  Q
    | ||| || |  |||||||||||||||||||||||||| |||||||| |||||||||||||    
T  32907251 cacatgcatagaaaaataataagtttgatacaaaatataacacaaatgtattaaaaaagtt 32907191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 7 - 103
Target Start/End: Complemental strand, 4603075 - 4602979
Alignment:
Q  7 gttcggttcggtttggatgattatgttnnnnnnntccgaaccgattcgatccaaatatatgcggtttaatttggatcggtttttggatatccaaagt 103  Q
    ||||||||||||||||||||||||          ||||| ||||| |||||||||||||||||||||| |||||||||||||||||| |||||||||    
T  4603075 gttcggttcggtttggatgattattcaaaaaaaatccgatccgatccgatccaaatatatgcggtttattttggatcggtttttggacatccaaagt 4602979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 44 - 101
Target Start/End: Original strand, 10182900 - 10182957
Alignment:
Q  44 gaaccgattcgatccaaatatatgcggtttaatttggatcggtttttggatatccaaa 101  Q
    |||||||  |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  10182900 gaaccgaaccgattcaaatatatgcggtttaatttggatcggtttttggatatccaaa 10182957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 41 - 101
Target Start/End: Complemental strand, 4267785 - 4267725
Alignment:
Q  41 tccgaaccgattcgatccaaatatatgcggtttaatttggatcggtttttggatatccaaa 101  Q
    ||||||||||  |||||||| ||||||||||||||||||||||||||||| ||| ||||||    
T  4267785 tccgaaccgaaccgatccaattatatgcggtttaatttggatcggtttttagatgtccaaa 4267725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 47 - 101
Target Start/End: Original strand, 12522885 - 12522939
Alignment:
Q  47 ccgattcgatccaaatatatgcggtttaatttggatcggtttttggatatccaaa 101  Q
    |||||||||||||||||||||| ||||||||||||| ||||||| ||||| ||||    
T  12522885 ccgattcgatccaaatatatgcagtttaatttggataggtttttagatattcaaa 12522939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 253305 - 253353
Alignment:
Q  53 cgatccaaatatatgcggtttaatttggatcggtttttggatatccaaa 101  Q
    ||||||||| ||||||||||  |||||||||||||||||||||||||||    
T  253305 cgatccaaacatatgcggttatatttggatcggtttttggatatccaaa 253353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 662553 - 662505
Alignment:
Q  53 cgatccaaatatatgcggtttaatttggatcggtttttggatatccaaa 101  Q
    ||||||||| ||||||||||  |||||||||||||||||||||||||||    
T  662553 cgatccaaacatatgcggttatatttggatcggtttttggatatccaaa 662505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 848351 - 848303
Alignment:
Q  53 cgatccaaatatatgcggtttaatttggatcggtttttggatatccaaa 101  Q
    ||||||||| ||||||||||  |||||||||||||||||||||||||||    
T  848351 cgatccaaacatatgcggttatatttggatcggtttttggatatccaaa 848303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 180 - 228
Target Start/End: Complemental strand, 4602867 - 4602819
Alignment:
Q  180 aaatttattaaaaaagttaacattacacaatgaaaatgattgattatat 228  Q
    |||| |||||||||| ||||| |||||||||||||||||||||||||||    
T  4602867 aaatgtattaaaaaaattaactttacacaatgaaaatgattgattatat 4602819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 149 - 197
Target Start/End: Complemental strand, 4602928 - 4602880
Alignment:
Q  149 aaaataataagtttgatacaaaatatgacacaaatttattaaaaaagtt 197  Q
    |||||||||||||||||||| ||||| |||||||| |||||||||||||    
T  4602928 aaaataataagtttgatacagaatataacacaaatgtattaaaaaagtt 4602880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 8081761 - 8081713
Alignment:
Q  53 cgatccaaatatatgcggtttaatttggatcggtttttggatatccaaa 101  Q
    ||||||||||  |||||||||||||||||||||||||| ||||||||||    
T  8081761 cgatccaaattaatgcggtttaatttggatcggtttttagatatccaaa 8081713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 180 - 228
Target Start/End: Complemental strand, 32907178 - 32907130
Alignment:
Q  180 aaatttattaaaaaagttaacattacacaatgaaaatgattgattatat 228  Q
    |||| |||||||||| ||||| |||||||||||||||||||||||||||    
T  32907178 aaatgtattaaaaaaattaactttacacaatgaaaatgattgattatat 32907130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 107
Target Start/End: Original strand, 11661072 - 11661138
Alignment:
Q  41 tccgaaccgattcgatccaaatatat-gcggtttaatttggatcggtttttggatatccaaagtgtaa 107  Q
    ||||||||||| |||||||||| ||| ||||||||||||||||||||||| || |||||||| |||||    
T  11661072 tccgaaccgatccgatccaaat-tatcgcggtttaatttggatcggttttcggttatccaaattgtaa 11661138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 82
Target Start/End: Complemental strand, 3774243 - 3774202
Alignment:
Q  41 tccgaaccgattcgatccaaatatatgcggtttaatttggat 82  Q
    ||||||||||  ||||||||||||||||||||||||||||||    
T  3774243 tccgaaccgaaccgatccaaatatatgcggtttaatttggat 3774202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 101
Target Start/End: Original strand, 27805093 - 27805146
Alignment:
Q  48 cgattcgatccaaatatatgcggtttaatttggatcggtttttggatatccaaa 101  Q
    |||| |||||||||||| |||||||||||||||||| ||||||  |||||||||    
T  27805093 cgatccgatccaaatatttgcggtttaatttggatcagtttttttatatccaaa 27805146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 114
Target Start/End: Complemental strand, 28583548 - 28583492
Alignment:
Q  58 caaatatatgcggtttaatttggatcggtttttggatatccaaagtgtaacatgtaa 114  Q
    ||||||||||| | ||||||||||| | |||||||||||||||| | ||||||||||    
T  28583548 caaatatatgcagcttaatttggattgatttttggatatccaaaatttaacatgtaa 28583492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 101
Target Start/End: Original strand, 40618767 - 40618819
Alignment:
Q  49 gattcgatccaaatatatgcggtttaatttggatcggtttttggatatccaaa 101  Q
    |||||||||||| |  || ||||||||||||||||||||||| ||||||||||    
T  40618767 gattcgatccaatttaatacggtttaatttggatcggtttttagatatccaaa 40618819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 97
Target Start/End: Original strand, 42199795 - 42199827
Alignment:
Q  65 atgcggtttaatttggatcggtttttggatatc 97  Q
    |||||||||||||||||||||||||||||||||    
T  42199795 atgcggtttaatttggatcggtttttggatatc 42199827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 96
Target Start/End: Complemental strand, 3106432 - 3106381
Alignment:
Q  45 aaccgattcgatccaaatatatgcggtttaatttggatcggtttttggatat 96  Q
    |||| ||||||| ||||||||||| ||||||||||||| |||||||| ||||    
T  3106432 aaccaattcgattcaaatatatgcagtttaatttggattggtttttgaatat 3106381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 107
Target Start/End: Complemental strand, 24948379 - 24948314
Alignment:
Q  42 ccgaaccgattcgatccaaatatat-gcggtttaatttggatcggtttttggatatccaaagtgtaa 107  Q
    |||||||||| |||||||||| ||| |||||||||||||||||| |||| || |||||||| |||||    
T  24948379 ccgaaccgatccgatccaaat-tatcgcggtttaatttggatcgattttcggttatccaaattgtaa 24948314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 101
Target Start/End: Complemental strand, 27575225 - 27575171
Alignment:
Q  47 ccgattcgatccaaatatatgcggtttaatttggatcggtttttggatatccaaa 101  Q
    ||||| ||||||||||  |||||||| |||||| |||||||||||||| ||||||    
T  27575225 ccgatccgatccaaattaatgcggttcaatttgaatcggtttttggatgtccaaa 27575171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 35738101 - 35738137
Alignment:
Q  65 atgcggtttaatttggatcggtttttggatatccaaa 101  Q
    ||||||||||||||||| |||||||||||||| ||||    
T  35738101 atgcggtttaatttggaacggtttttggatattcaaa 35738137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 226
Target Start/End: Original strand, 35738184 - 35738263
Alignment:
Q  147 ataaaataataagtttgatacaaaatatgacaca-aatttattaaaaaagttaacattacacaatgaaaatgattgattat 226  Q
    ||||||||||| |||||||||| ||||| || ||  ||||||||||||| |||| |||||| ||| |||||| ||||||||    
T  35738184 ataaaataataggtttgatacagaatataactcatgatttattaaaaaa-ttaatattacaaaataaaaatggttgattat 35738263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 101
Target Start/End: Complemental strand, 41580397 - 41580365
Alignment:
Q  69 ggtttaatttggatcggtttttggatatccaaa 101  Q
    ||||||||||||||||||||||||| |||||||    
T  41580397 ggtttaatttggatcggtttttggaaatccaaa 41580365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 155; Significance: 2e-82; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 7 - 228
Target Start/End: Complemental strand, 14462155 - 14461933
Alignment:
Q  7 gttcggttcggtttggatgattatgttnnnnnnntccgaaccgattcgatccaaatatatgcggtttaatttggatcggtttttggatatccaaagtgta 106  Q
    |||||||||||||||||||||||||||       ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  14462155 gttcggttcggtttggatgattatgttaaaaaaatccgaaccgatccgatctaaatatatgcggtttaatttggatcggtttttggatatccaaagtgta 14462056  T
Q  107 acatgtaannnnnnnnn-aatattaatattactcatacacaataaaataataagtttgatacaaaatatgacacaaatttattaaaaaagttaacattac 205  Q
    ||||||||          |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  14462055 acatgtaattttttttttaatattaatattactcatacacaataaaataataggtttgatacaaaatatgacacaaatttattaaaaaagttaacattac 14461956  T
Q  206 acaatgaaaatgattgattatat 228  Q
    |||||||||||||||||||||||    
T  14461955 acaatgaaaatgattgattatat 14461933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 42 - 228
Target Start/End: Complemental strand, 5559803 - 5559615
Alignment:
Q  42 ccgaaccgattcgatccaaatatatgcggtttaatttggatcggtttttggatatccaaagtgtaacatgtaannnnnnnnn--aatattaatattactc 139  Q
    |||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||           ||||||||||||||||    
T  5559803 ccgaaccgatccgatccaaatatatgtggtttaatttggatcgatttttggatatccaaagtgtaacatgtaattttttttgttaatattaatattactc 5559704  T
Q  140 atacacaataaaataataagtttgatacaaaatatgacacaaatttattaaaaaagttaacattacacaatgaaaatgattgattatat 228  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  5559703 atacacaataaaataataggtttgatacaaaatatgacacaaatttatttaaaaagttaacattatacaatgaaaatgattgattatat 5559615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 55 - 228
Target Start/End: Original strand, 24063600 - 24063773
Alignment:
Q  55 atccaaatatatgcggtttaatttggatcggtttttggatatccaaagtgtaacatgtaannnnnnnnn-aatattaatattactcatacacaataaaat 153  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||          |||||||| ||||| |||||||||||||||    
T  24063600 atccaaatatatgcggtttaatttggattggtttttggatatccaaagttcaacatgtaatttttttattaatattaacattacacatacacaataaaat 24063699  T
Q  154 aataagtttgatacaaaatatgacacaaatttattaaaaaagttaacattacacaatgaaaatgattgattatat 228  Q
    |||| |||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  24063700 aataggtttgatacaaa-tataacacaaatgtattaaaaaagttaacattacacaatgaaaatggttgattatat 24063773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 53 - 228
Target Start/End: Complemental strand, 16902967 - 16902796
Alignment:
Q  53 cgatccaaatatatgcggtttaatttggatcggtttttggatatccaaagtgtaacatgtaannnnnnnnnaatattaatattactcatacacaataaaa 152  Q
    |||||||||||||| ||||||| ||||||||  |||||||||||| |||||| |||||||||           ||||||||||||  ||||||  |||||    
T  16902967 cgatccaaatatatacggtttagtttggatcc-tttttggatatctaaagtgcaacatgtaatttttttt---tattaatattacaaatacacggtaaaa 16902872  T
Q  153 taataagtttgatacaaaatatgacacaaatttattaaaaaagttaacattacacaatgaaaatgattgattatat 228  Q
     ||||  ||| || |||||||| |||||||| |||||||||| ||||||||||||||| |||||||| ||||||||    
T  16902871 aaatatatttcatgcaaaatataacacaaatgtattaaaaaaattaacattacacaataaaaatgatcgattatat 16902796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 41 - 101
Target Start/End: Original strand, 35671784 - 35671844
Alignment:
Q  41 tccgaaccgattcgatccaaatatatgcggtttaatttggatcggtttttggatatccaaa 101  Q
    ||||||||||  |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  35671784 tccgaaccgaaccgatccaaatatatgcagtttaatttggatcggtttttggatatccaaa 35671844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 101
Target Start/End: Original strand, 41198150 - 41198244
Alignment:
Q  7 gttcggttcggtttggatgattatgttnnnnnnntccgaaccgattcgatccaaatatatgcggtttaatttggatcggtttttggatatccaaa 101  Q
    |||||||||||||||||||| |||  |       ||||||| |||  |||||||||||||||| |||||||||||||||||||||||||||||||    
T  41198150 gttcggttcggtttggatgagtattctaacaaaatccgaactgatctgatccaaatatatgcgatttaatttggatcggtttttggatatccaaa 41198244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 58 - 101
Target Start/End: Original strand, 33719286 - 33719329
Alignment:
Q  58 caaatatatgcggtttaatttggatcggtttttggatatccaaa 101  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  33719286 caaatatatgcggtttaatttggatcggtttttgaatatccaaa 33719329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 124 - 228
Target Start/End: Original strand, 535133 - 535235
Alignment:
Q  124 aatattaatattactcatacacaataaaataataagtttgatacaaaatatgacacaaatttattaaaaaagttaacattacacaatgaaaatgattgat 223  Q
    |||||||||||||| ||||||   ||| ||| ||| |||||| ||||| || ||| |||| |||||||||  ||||||||||| |||||||||||| |||    
T  535133 aatattaatattacacatacaaggtaacatactaaatttgatgcaaaaaataacaaaaatatattaaaaa--ttaacattacaaaatgaaaatgatcgat 535230  T
Q  224 tatat 228  Q
    |||||    
T  535231 tatat 535235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 41 - 90
Target Start/End: Complemental strand, 24615207 - 24615158
Alignment:
Q  41 tccgaaccgattcgatccaaatatatgcggtttaatttggatcggttttt 90  Q
    ||||||||||  |||||||||||||||||||||||||||||||| |||||    
T  24615207 tccgaaccgagccgatccaaatatatgcggtttaatttggatcgattttt 24615158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 101
Target Start/End: Complemental strand, 28655994 - 28655937
Alignment:
Q  44 gaaccgattcgatccaaatatatgcggtttaatttggatcggtttttggatatccaaa 101  Q
    ||||| || ||||| |||||||||||||||||||||||||| ||||||||||| ||||    
T  28655994 gaaccaatccgatcaaaatatatgcggtttaatttggatcgatttttggatattcaaa 28655937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 113
Target Start/End: Complemental strand, 33111434 - 33111381
Alignment:
Q  60 aatatatgcggtttaatttggatcggtttttggatatccaaagtgtaacatgta 113  Q
    |||||||||||||||||||  |||| |||||||||||||||| || ||||||||    
T  33111434 aatatatgcggtttaatttaaatcgatttttggatatccaaaatgcaacatgta 33111381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 113
Target Start/End: Complemental strand, 5133976 - 5133912
Alignment:
Q  49 gattcgatccaaatatatgcggtttaatttggatcggtttttggatatccaaagtgtaacatgta 113  Q
    |||||||||||||||||| ||||||||||||| ||  |||||  ||||||||| || ||||||||    
T  5133976 gattcgatccaaatatatacggtttaatttggttcaatttttttatatccaaaatgaaacatgta 5133912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 31088603 - 31088651
Alignment:
Q  53 cgatccaaatatatgcggtttaatttggatcggtttttggatatccaaa 101  Q
    |||| ||||||||||||||||||||||| ||| ||||||||||| ||||    
T  31088603 cgattcaaatatatgcggtttaatttggttcgatttttggatattcaaa 31088651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 88
Target Start/End: Original strand, 7784832 - 7784871
Alignment:
Q  49 gattcgatccaaatatatgcggtttaatttggatcggttt 88  Q
    |||| ||||||||||||||||||||||||||||| |||||    
T  7784832 gatttgatccaaatatatgcggtttaatttggattggttt 7784871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 101
Target Start/End: Original strand, 40211251 - 40211290
Alignment:
Q  62 tatatgcggtttaatttggatcggtttttggatatccaaa 101  Q
    ||||||||||||| ||||||||| ||||||||||||||||    
T  40211251 tatatgcggtttagtttggatcgatttttggatatccaaa 40211290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Original strand, 11619694 - 11619732
Alignment:
Q  44 gaaccgattcgatccaaatatatgcggtttaatttggat 82  Q
    |||||||||| |||||||||||| |||||||||||||||    
T  11619694 gaaccgattcaatccaaatatatacggtttaatttggat 11619732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 107
Target Start/End: Complemental strand, 25347682 - 25347617
Alignment:
Q  42 ccgaaccgattcgatccaaatatat-gcggtttaatttggatcggtttttggatatccaaagtgtaa 107  Q
    |||||| ||| |||||||||| ||| ||||||||||||||||||||||| || |||||||| |||||    
T  25347682 ccgaactgatccgatccaaat-tatcgcggtttaatttggatcggttttcggttatccaaattgtaa 25347617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 174
Target Start/End: Complemental strand, 28655879 - 28655829
Alignment:
Q  124 aatattaatattactcatacacaataaaataataagtttgatacaaaatat 174  Q
    |||||||||||||| || ||||  |||||||||||||||||| ||||||||    
T  28655879 aatattaatattacacaaacacggtaaaataataagtttgatgcaaaatat 28655829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 101
Target Start/End: Complemental strand, 22173294 - 22173241
Alignment:
Q  48 cgattcgatccaaatatatgcggtttaatttggatcggtttttggatatccaaa 101  Q
    |||| ||||||||||  ||||||||||||||||||| |||||| ||| ||||||    
T  22173294 cgatccgatccaaattaatgcggtttaatttggatcagtttttagatgtccaaa 22173241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 97
Target Start/End: Original strand, 39193303 - 39193347
Alignment:
Q  53 cgatccaaatatatgcggtttaatttggatcggtttttggatatc 97  Q
    |||| |||||||||| |||||||||||||| |||||||| |||||    
T  39193303 cgatacaaatatatgtggtttaatttggattggtttttgtatatc 39193347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 154; Significance: 8e-82; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 7 - 228
Target Start/End: Complemental strand, 40987793 - 40987572
Alignment:
Q  7 gttcggttcggtttggatgattatgttnnnnnnntccgaaccgattcgatccaaatatatgcggtttaatttggatcggtttttggatatccaaagtgta 106  Q
    |||||||||||||||||||||||||||       || |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40987793 gttcggttcggtttggatgattatgttaaaaaaatctgaaccgatccgacccaaatatatgcggtttaatttggatcggtttttggatatccaaagtgta 40987694  T
Q  107 acatgtaannnnnnnnnaatattaatattactcatacacaataaaataataagtttgatacaaaatatgacacaaatttattaaaaaagttaacattaca 206  Q
    ||||||||         |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  40987693 acatgtaatttttttttaatattaatattactcatacacaataaaataatcggtttgatacaaaatatgacacaaatttattaaaaaagttaacattaca 40987594  T
Q  207 caatgaaaatgattgattatat 228  Q
    ||||||||||||||||||||||    
T  40987593 caatgaaaatgattgattatat 40987572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 7 - 227
Target Start/End: Complemental strand, 13555221 - 13555001
Alignment:
Q  7 gttcggttcggtttggatgattatgttnnnnnnntccgaaccgattcgatccaaatatatgcggtttaatttggatcggtttttggatatccaaagtgta 106  Q
    |||||||||||||||||||||||||||       | | ||||||| |  | ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  13555221 gttcggttcggtttggatgattatgttaaaaaaattcaaaccgatcc--ttcaaatatatgcggtttaatttagatcggtttttggatatccaaagtgta 13555124  T
Q  107 acatgtaannnnnnnnn--aatattaatattactcatacacaataaaataataagtttgatacaaaatatgacacaaatttattaaaaaagttaacatta 204  Q
    ||||||||           ||||||||||||||||||| ||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||    
T  13555123 acatgtaattttttttatcaatattaatattactcatatacaataaaatagtaggtttggtacaaaatatgacacaaatttattaaaaaagttaacatta 13555024  T
Q  205 cacaatgaaaatgattgattata 227  Q
    | |||||||||||||||||||||    
T  13555023 cccaatgaaaatgattgattata 13555001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 124 - 228
Target Start/End: Complemental strand, 13521813 - 13521709
Alignment:
Q  124 aatattaatattactcatacacaataaaataataagtttgatacaaaatatgacacaaatttattaaaaaagttaacattacacaatgaaaatgattgat 223  Q
    ||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13521813 aatattaatattactcatatacaataaaatagtaggtttgatacaaaatatgacacaaatttattaaaaaagttaacattacacaatgaaaatgattgat 13521714  T
Q  224 tatat 228  Q
    |||||    
T  13521713 tatat 13521709  T

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Target: chr5; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 101
Target Start/End: Original strand, 1495520 - 1495614
Alignment:
Q  7 gttcggttcggtttggatgattatgttnnnnnnntccgaaccgattcgatccaaatatatgcggtttaatttggatcggtttttggatatccaaa 101  Q
    |||||||||||||||||||| |||  |       ||| ||||||  ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  1495520 gttcggttcggtttggatgagtattctaaaaaaatccaaaccgaaccgatccaaatatatgcggtttaatttggatcggtttttggacatccaaa 1495614  T

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Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 44 - 101
Target Start/End: Original strand, 17342147 - 17342204
Alignment:
Q  44 gaaccgattcgatccaaatatatgcggtttaatttggatcggtttttggatatccaaa 101  Q
    ||||| || |||||| |||||||||||||||||||||||||| |||||||||||||||    
T  17342147 gaacctatccgatccgaatatatgcggtttaatttggatcggattttggatatccaaa 17342204  T

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Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 94
Target Start/End: Complemental strand, 27111119 - 27111032
Alignment:
Q  7 gttcggttcggtttggatgattatgttnnnnnnntccgaaccgattcgatccaaatatatgcggtttaatttggatcggtttttggat 94  Q
    |||||||||||||||||||| |||  |       ||||||||||  |||||||| |||||||||||||||||||||| ||||||||||    
T  27111119 gttcggttcggtttggatgagtattctaaaaaaatccgaaccgaaccgatccaattatatgcggtttaatttggatcagtttttggat 27111032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 101
Target Start/End: Original strand, 35449317 - 35449374
Alignment:
Q  44 gaaccgattcgatccaaatatatgcggtttaatttggatcggtttttggatatccaaa 101  Q
    |||||||  ||||||||||||||||||||||||||| ||||||||||| | |||||||    
T  35449317 gaaccgaaccgatccaaatatatgcggtttaatttgaatcggtttttgaacatccaaa 35449374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 33996137 - 33996089
Alignment:
Q  53 cgatccaaatatatgcggtttaatttggatcggtttttggatatccaaa 101  Q
    |||| ||||||||||||||||||||| |||| |||||||||||||||||    
T  33996137 cgattcaaatatatgcggtttaatttagatcagtttttggatatccaaa 33996089  T

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Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 101
Target Start/End: Complemental strand, 10416209 - 10416158
Alignment:
Q  50 attcgatccaaatatatgcggtttaatttggatcggtttttggatatccaaa 101  Q
    |||||||||||||||||||| |||||||||||| ||||| || |||||||||    
T  10416209 attcgatccaaatatatgcgatttaatttggattggtttatgaatatccaaa 10416158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 55 - 101
Target Start/End: Original strand, 7946471 - 7946517
Alignment:
Q  55 atccaaatatatgcggtttaatttggatcggtttttggatatccaaa 101  Q
    |||||||||||||||||||||||||||| | |||| |||||||||||    
T  7946471 atccaaatatatgcggtttaatttggattgattttgggatatccaaa 7946517  T

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Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 33745940 - 33745987
Alignment:
Q  53 cgatccaaatatatgcggtttaatttggatcggtttttggatatccaaa 101  Q
    ||||||||||||||||||||||||||| ||| | |||||||||||||||    
T  33745940 cgatccaaatatatgcggtttaatttgaatcag-ttttggatatccaaa 33745987  T

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Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 107
Target Start/End: Complemental strand, 30672462 - 30672396
Alignment:
Q  41 tccgaaccgattcgatccaaatatat-gcggtttaatttggatcggtttttggatatccaaagtgtaa 107  Q
    ||||||||||| |||||||||| ||| ||| ||||||||||||||||||| || |||||||| |||||    
T  30672462 tccgaaccgatccgatccaaat-tatcgcgatttaatttggatcggttttcggttatccaaattgtaa 30672396  T

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Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 114
Target Start/End: Original strand, 42715846 - 42715905
Alignment:
Q  55 atccaaatatatgcggtttaatttggatcggtttttggatatccaaagtgtaacatgtaa 114  Q
    |||| |||||||| |||||||||||| ||  | ||||||||||||||||| |||||||||    
T  42715846 atcccaatatatgaggtttaatttgggtctatgtttggatatccaaagtgcaacatgtaa 42715905  T

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Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 226
Target Start/End: Complemental strand, 17035310 - 17035264
Alignment:
Q  180 aaatttattaaaaaagttaacattacacaatgaaaatgattgattat 226  Q
    |||| |||||||||| || |||||||| |||||||||||||||||||    
T  17035310 aaatatattaaaaaaatttacattacataatgaaaatgattgattat 17035264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 170
Target Start/End: Original strand, 17342260 - 17342306
Alignment:
Q  124 aatattaatattactcatacacaataaaataataagtttgatacaaa 170  Q
    |||||||||||||| || ||||| |||||||||| ||||||||||||    
T  17342260 aatattaatattacacaaacacagtaaaataataggtttgatacaaa 17342306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 101
Target Start/End: Complemental strand, 12443988 - 12443955
Alignment:
Q  68 cggtttaatttggatcggtttttggatatccaaa 101  Q
    |||||||||||||||||||||||| |||||||||    
T  12443988 cggtttaatttggatcggtttttgaatatccaaa 12443955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 94
Target Start/End: Complemental strand, 41061651 - 41061610
Alignment:
Q  53 cgatccaaatatatgcggtttaatttggatcggtttttggat 94  Q
    |||||||| ||||||| ||||||||||||||| |||||||||    
T  41061651 cgatccaattatatgctgtttaatttggatcgatttttggat 41061610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 20209746 - 20209782
Alignment:
Q  65 atgcggtttaatttggatcggtttttggatatccaaa 101  Q
    |||||||||||||||||||  ||||||||||||||||    
T  20209746 atgcggtttaatttggatcaatttttggatatccaaa 20209782  T

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Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 83
Target Start/End: Complemental strand, 40044582 - 40044554
Alignment:
Q  55 atccaaatatatgcggtttaatttggatc 83  Q
    |||||||||||||||||||||||||||||    
T  40044582 atccaaatatatgcggtttaatttggatc 40044554  T

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Target: chr2 (Bit Score: 146; Significance: 5e-77; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 7 - 228
Target Start/End: Complemental strand, 16672461 - 16672245
Alignment:
Q  7 gttcggttcggtttggatgattatgttnnnnnnntccgaaccgattcgatccaaatatatgcggtttaatttggatcggtttttggatatccaaagtgta 106  Q
    |||||||||||||||||||||||||||       |||||||| ||     ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16672461 gttcggttcggtttggatgattatgttaaaaaaatccgaaccaat-----ccaaatatatgcggtttaatttggatcggtttttggatatccaaagtgta 16672367  T
Q  107 acatgtaannnnnnnnnaatattaatattactcatacacaataaaataataagtttgatacaaaatatgacacaaatttattaaaaaagttaacattaca 206  Q
    ||||||||         |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  16672366 acatgtaatttttttttaatattaatattactcatacacaataaaataataggtttgatacaaaatatgacacaaatttattaaaaaagttaacattaca 16672267  T
Q  207 caatgaaaatgattgattatat 228  Q
    ||||||||||||||||||||||    
T  16672266 caatgaaaatgattgattatat 16672245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 7 - 197
Target Start/End: Complemental strand, 18512026 - 18511833
Alignment:
Q  7 gttcggttcggtttggatgattatgttnnnnnnntccgaaccgattcgatccaaatatatgcggtttaatttggatcggtttttggatatccaaagtgta 106  Q
    ||||||||||||||||||||||||          ||||| ||||| |||||||||||||||||||||| |||||||||||||||||| |||||||||  |    
T  18512026 gttcggttcggtttggatgattattcaaaaaaaatccgatccgatccgatccaaatatatgcggtttattttggatcggtttttggacatccaaagtaca 18511927  T
Q  107 acatgtaannnnnnnnnaat---attaatattactcatacacaataaaataataagtttgatacaaaatatgacacaaatttattaaaaaagtt 197  Q
    |||| |||         | |   | |||||| || ||| || |  |||||||||||||||||||||||||| |||||||| |||||||||||||    
T  18511926 acatttaatttttttttattttaagtaatatgacacatgcatagaaaaataataagtttgatacaaaatataacacaaatgtattaaaaaagtt 18511833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 54 - 101
Target Start/End: Complemental strand, 29772614 - 29772567
Alignment:
Q  54 gatccaaatatatgcggtttaatttggatcggtttttggatatccaaa 101  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  29772614 gatccaaatatatgcggtttaatttggatcggtttttggatattcaaa 29772567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 41 - 101
Target Start/End: Complemental strand, 10997656 - 10997596
Alignment:
Q  41 tccgaaccgattcgatccaaatatatgcggtttaatttggatcggtttttggatatccaaa 101  Q
    ||||||||||| |||||||||||||||| ||| |||||||||| ||| |||||||||||||    
T  10997656 tccgaaccgatccgatccaaatatatgcagttaaatttggatcagttgttggatatccaaa 10997596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 99
Target Start/End: Complemental strand, 22596770 - 22596714
Alignment:
Q  43 cgaaccgattcgatccaaatatatgcggtttaatttggatcggtttttggatatcca 99  Q
    ||||||||  |||||||||||||||||||||||||||||||| |||||||| |||||    
T  22596770 cgaaccgaaccgatccaaatatatgcggtttaatttggatcgatttttggacatcca 22596714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 107
Target Start/End: Complemental strand, 39989238 - 39989174
Alignment:
Q  43 cgaaccgattcgatccaaatatatgcggtttaatttggatcggtttttggatatccaaagtgtaa 107  Q
    ||||||||| ||||||||||||||| ||||||||||||| ||||||||  ||||||||| |||||    
T  39989238 cgaaccgatccgatccaaatatatgtggtttaatttggaccggtttttatatatccaaaatgtaa 39989174  T

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Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 54 - 101
Target Start/End: Original strand, 21351999 - 21352046
Alignment:
Q  54 gatccaaatatatgcggtttaatttggatcggtttttggatatccaaa 101  Q
    ||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  21351999 gatccaattatatgcggtttaatttggatcggtttttggatgtccaaa 21352046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 180 - 228
Target Start/End: Complemental strand, 18511820 - 18511772
Alignment:
Q  180 aaatttattaaaaaagttaacattacacaatgaaaatgattgattatat 228  Q
    |||| |||||||||| ||||| |||||||||||||||||||||||||||    
T  18511820 aaatgtattaaaaaaattaactttacacaatgaaaatgattgattatat 18511772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 110
Target Start/End: Complemental strand, 34440301 - 34440238
Alignment:
Q  47 ccgattcgatccaaatatatgcggtttaatttggatcggtttttggatatccaaagtgtaacat 110  Q
    ||||| |||| |||||||||| ||| |||||||| ||||||||||||||| ||||||| |||||    
T  34440301 ccgatccgattcaaatatatgtggtataatttgggtcggtttttggatattcaaagtgcaacat 34440238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 101
Target Start/End: Original strand, 42295498 - 42295541
Alignment:
Q  58 caaatatatgcggtttaatttggatcggtttttggatatccaaa 101  Q
    ||||||||||| |||||||||||||||||||||||| |||||||    
T  42295498 caaatatatgcagtttaatttggatcggtttttggacatccaaa 42295541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 47 - 101
Target Start/End: Complemental strand, 33441396 - 33441342
Alignment:
Q  47 ccgattcgatccaaatatatgcggtttaatttggatcggtttttggatatccaaa 101  Q
    ||||| ||||||||||  |||| ||||||||||||||||||||||||| ||||||    
T  33441396 ccgatccgatccaaattaatgcagtttaatttggatcggtttttggatgtccaaa 33441342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 101
Target Start/End: Original strand, 314124 - 314181
Alignment:
Q  44 gaaccgattcgatccaaatatatgcggtttaatttggatcggtttttggatatccaaa 101  Q
    |||| ||| ||||||||| |||| |||| ||||||||||| |||||||||||||||||    
T  314124 gaactgatccgatccaaagatatacggtataatttggatcagtttttggatatccaaa 314181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0396 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0396
Description:

Target: scaffold0396; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 5 - 101
Target Start/End: Original strand, 916 - 1012
Alignment:
Q  5 cagttcggttcggtttggatgattatgttnnnnnnntccgaaccgattcgatccaaatatatgcggtttaatttggatcggtttttggatatccaaa 101  Q
    |||||||||||||||||||||| |||  |       || |||||||  | ||||||||||||||||||||||||||||||||||||||| |||||||    
T  916 cagttcggttcggtttggatgagtattctaaaaaaatcagaaccgaaccaatccaaatatatgcggtttaatttggatcggtttttggacatccaaa 1012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0717 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0717
Description:

Target: scaffold0717; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 101
Target Start/End: Complemental strand, 5924 - 5865
Alignment:
Q  42 ccgaaccgattcgatccaaatatatgcggtttaatttggatcggtttttggatatccaaa 101  Q
    |||| ||||| ||||||||||||||||  | ||||||||||||| |||||||||||||||    
T  5924 ccgatccgatccgatccaaatatatgccttgtaatttggatcggcttttggatatccaaa 5865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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