View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2762_low_23 (Length: 208)
Name: NF2762_low_23
Description: NF2762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2762_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 154; Significance: 7e-82; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 19 - 184
Target Start/End: Original strand, 19887676 - 19887841
Alignment:
| Q |
19 |
ctttcaccacttctcggctacaattctcaactgcatagtgtaatgccaatgcttcatcgaggtttagaccttctcccatgaccatgagtttgactagttc |
118 |
Q |
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| T |
19887676 |
ctttcaccacttctcggctacaattctcaactgcatagtgtaatgccaatgcttcatcaaggtttaggccttctcccatgaccatgagtttgactagttc |
19887775 |
T |
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| Q |
119 |
cacatcggaggagtcaagggcccgtctcattcttcggatcttctggtcttcgaggtcaccaaagtc |
184 |
Q |
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| T |
19887776 |
cacatcggaggagtcaagggcccgtctcattcttcggatcttctggtcttcgaggtcaccgaagtc |
19887841 |
T |
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Target: chr7 (Bit Score: 77; Significance: 6e-36; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 19 - 175
Target Start/End: Complemental strand, 35319461 - 35319305
Alignment:
| Q |
19 |
ctttcaccacttctcggctacaattctcaactgcatagtgtaatgccaatgcttcatcgaggtttagaccttctcccatgaccatgagtttgactagttc |
118 |
Q |
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||||||| ||||||| || ||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||| |
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| T |
35319461 |
ctttcacaacttctctactgcaattctcaacggcataaggtaatgccaatgcttcatcgaggtttaggccttctcccattaccatgagtttcactagttc |
35319362 |
T |
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| Q |
119 |
cacatcggaggagtcaagggcccgtctcattcttcggatcttctggtcttcgaggtc |
175 |
Q |
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|| || |||||||| ||||| |||||||| | ||||| ||||||||||| ||||| |
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| T |
35319361 |
aacgtctgaggagtcgagggcacgtctcatccgacggattttctggtcttcaaggtc |
35319305 |
T |
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