View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2762_low_4 (Length: 461)
Name: NF2762_low_4
Description: NF2762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2762_low_4 |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: scaffold0007 (Bit Score: 445; Significance: 0; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 1 - 461
Target Start/End: Complemental strand, 150512 - 150052
Alignment:
| Q |
1 |
agaagatctcattcttgatcccataaactgtgaaagttcttcaaaaacttcttcatcaaaagaagctggtaacctatgcaactttctttcataaggtgac |
100 |
Q |
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| T |
150512 |
agaagatctcattcttgatcccataaactgtgaaagttcttcaaaaacttcttcatcaaaagaagctggtaacctatgcaactttctttcataaggtgaa |
150413 |
T |
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| Q |
101 |
agtctaaaatagcttttaccaacttgttctctttcaccacctctttcccattcataaactttcctaaactcacctaacatgttatcccattttgtacctg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
150412 |
agtctaaaatagcttttaccaacttgttctctttcaccacctctttcccattcataaactttcctaaactcacctaacatgttatcccattttgtacctg |
150313 |
T |
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| Q |
201 |
ctgtttttgcatctctattaacaccatgtttgtttagaaattcagctacttctttgtctttatcagctcttgtttttcctctactcattcccatctcttg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
150312 |
ctgtttttgcatctctattaacaccatgtttgtttagaaattcagctacttctttgtctttatcagctcttgttttccctctactcattcccatctcttg |
150213 |
T |
|
| Q |
301 |
ttcagttcttgaagatgtttctgagcttgtttggtattgttctttccatgctcttgctaaccatagcatttcattaggtttccaaacaggacttacatat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
150212 |
ttcagttcttgaagatgtttctgagcttgtttggtattgttctttccatgctcttgctaaccatagcatttcattaggtttccaaacaggacttacatat |
150113 |
T |
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| Q |
401 |
ttcccttttcttagttgttgatgaacttgtcggtctaactcttgtaacctatttccttctt |
461 |
Q |
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|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
150112 |
ttcccttttcttagttgttgatgaacttgttgttctaactcttgtaacctatttccttctt |
150052 |
T |
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