View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2762_low_5 (Length: 440)
Name: NF2762_low_5
Description: NF2762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2762_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 359; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 11 - 422
Target Start/End: Complemental strand, 3884733 - 3884323
Alignment:
| Q |
11 |
cacagatcagagagtgaattggaagatgatgaacaaccaattagtgttactttatggttaccaatgttgctttttgtattggttttagtcatatctttat |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3884733 |
cacagatcagagagtgaattggaagatgatgaacaacctattagtgttactttatggttaccaatgttgctttttgtattggttttagtcatatctttat |
3884634 |
T |
|
| Q |
111 |
cagnnnnnnnggataagagcttcacaaggtttgatcgtaattggattcatagagttggtggttcttctggtggtattgttttcattcttattcttctctt |
210 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
3884633 |
cagcttttttagataagagcttcacaaggtttgatcgtaattggattcatagagttggtg-ttcttctggtggtattgttttcattcttattcttctctt |
3884535 |
T |
|
| Q |
211 |
tcttgttttgaagtgtaaagcatctctgttgtaatgtaagaaccttgcatgcatgctcaaggaaggtttgtgataaaactaagtgttgaatcttgaactt |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
3884534 |
tcttgttttgaagtgtaaagcatctctgttgtaatgtaagaaccttgcatgcatgctcaaggaaggtttatgataaaactaagtgttgaatcttgaactt |
3884435 |
T |
|
| Q |
311 |
aagatgaatttatgttttaagctaattattgtctgctttcaaagtacaatgtatttaagttaataaacttgatattttcatggtagaaatattagcaaaa |
410 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
3884434 |
aagatgaatttatgttttaagctaattattgtctgcgctcaaagtacaatgtatttaagttaataaacttgatattttcatggtagaaatattagctaaa |
3884335 |
T |
|
| Q |
411 |
tctattaagaac |
422 |
Q |
| |
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|||||||||||| |
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| T |
3884334 |
tctattaagaac |
3884323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 11 - 262
Target Start/End: Complemental strand, 3874205 - 3873957
Alignment:
| Q |
11 |
cacagatcagagagtgaattggaagatgatgaacaaccaattagtgttactttatggttaccaatgttgctttttgtattggttttagtcatatctttat |
110 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
3874205 |
cacagatcagagagtgagttggaagatgatgaacaaccaattagtgttactttatggttaccaatgttactttttgtattggttttagtcatatctttat |
3874106 |
T |
|
| Q |
111 |
cagnnnnnnnggataagagcttcacaaggtttgatcgtaattggattcatagagttggtggttcttctggtggtattgttttcattcttattcttctctt |
210 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3874105 |
cagcttttttggataagagcttcacaaggtttgatcgtaattggattcatagagttggtggttcttctggtggtattgttttcattcttattcttctctt |
3874006 |
T |
|
| Q |
211 |
tcttgttttgaagtgtaaagcatctctgttgtaatgtaagaaccttgcatgc |
262 |
Q |
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|
| T |
3874005 |
tcttgttttgaagtgtaaagcatct---ttgtaatgtaagaaccttgcatgc |
3873957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 325 - 416
Target Start/End: Complemental strand, 3873352 - 3873256
Alignment:
| Q |
325 |
ttttaagctaattattgtctgctttcaaagtacaat-----gtatttaagttaataaacttgatattttcatggtagaaatattagcaaaatctatt |
416 |
Q |
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|||||||||||||| ||||| |||| |||||||||| ||||||||| |||||||||| |||||||| ||||||||||||| | |||||||||| |
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| T |
3873352 |
ttttaagctaattagtgtcttctttgaaagtacaataatgtgtatttaagctaataaacttcatattttcttggtagaaatatttgtaaaatctatt |
3873256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 139 - 235
Target Start/End: Complemental strand, 48453561 - 48453465
Alignment:
| Q |
139 |
gtttgatcgtaattggattcatagagttggtggttcttctggtggtattgttttcattcttattcttctctttcttgttttgaagtgtaaagcatct |
235 |
Q |
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|||||||||| | ||||||||||||||| |||| || || || |||||| || | ||| ||| | |||| |||||| |||||||||| ||| ||||| |
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| T |
48453561 |
gtttgatcgttactggattcatagagtttgtggctcctcaggcggtatttttgtgattattactgttctttttcttattttgaagtggaaatcatct |
48453465 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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