View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2762_low_9 (Length: 378)
Name: NF2762_low_9
Description: NF2762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2762_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 6 - 359
Target Start/End: Complemental strand, 50440705 - 50440347
Alignment:
| Q |
6 |
tctaagatttcttctctaaaaatacaaatcatgaccttgttgtcaatttatgttgcattctagacattaaggaaaccaatgaccgtgagtgttatttagg |
105 |
Q |
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| T |
50440705 |
tctaagatttcttctctaaaaatacaaatcatgaccttgttgtcaatttatgttgcattctagacattaaggaaaccaatgagcgtgagtgttatttagg |
50440606 |
T |
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| Q |
106 |
atatgcttcaccaaaaaatttataaacattcgttcaacattcttattgataatatgagnnnnnnnttaactagagggaaaactaactctttctgttgcag |
205 |
Q |
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| T |
50440605 |
atatgcttcaccaaaaaatttataaacattcgttcaacattcttattgataatatgagaaaaaaattaactagagggaaaactaactctttctgttgcag |
50440506 |
T |
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| Q |
206 |
gtctcatcacccagaaataatttgcaggaacttcatttagggatccacttgggaacaacaaaagtgatatcttgtttcgtggagtaagattttcctcctt |
305 |
Q |
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| T |
50440505 |
gtctcatcacccagaaataatttgcaggaacttcatttagggatccacttgggaacaacaaaagtgatatcttgtttcgtggagtaagattttcctcctt |
50440406 |
T |
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| Q |
306 |
aaagatg-----aatgtgttcttggatttaaaaacttgtgtatgctaaaccaagcgtac |
359 |
Q |
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| T |
50440405 |
aaagatgaatataatgtgttcttggatttaaaaacttgtgtatgctaaaccaagcgtac |
50440347 |
T |
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