View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2763_high_15 (Length: 241)
Name: NF2763_high_15
Description: NF2763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2763_high_15 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 21 - 241
Target Start/End: Original strand, 27357009 - 27357229
Alignment:
| Q |
21 |
ggtggaggcttgtattcaatgtgatcaaaaacaggtcgaggtggatcacgagcatggagtagtgttcggccaatgaacggtgggatggaaacatcaaggc |
120 |
Q |
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| T |
27357009 |
ggtggaggcttgtattcaatgtgatcaaaaacaggtcgaggtggatcacgagcatggagtagtgttcggccaatgaacggtgggatggaaacatcaaggc |
27357108 |
T |
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| Q |
121 |
cacgagctacatctgaccatgaattgatgaagtgaagaccagatgctccatctgctacatgatgttgcataccaacgcctaacgatactcctccgcattt |
220 |
Q |
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| T |
27357109 |
cacgagctacatctgaccatgaattgatgaagtgaagaccagatgctccatctgctacatgatgttgcataccaacgcctaacgatactcctccgcattt |
27357208 |
T |
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| Q |
221 |
gaaatgtgttacctgcatgca |
241 |
Q |
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| T |
27357209 |
gaaatgtgttacctgcatgca |
27357229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 21 - 241
Target Start/End: Complemental strand, 45410154 - 45409934
Alignment:
| Q |
21 |
ggtggaggcttgtattcaatgtgatcaaaaacaggtcgaggtggatcacgagcatggagtagtgttcggccaatgaacggtgggatggaaacatcaaggc |
120 |
Q |
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| T |
45410154 |
ggtggaggcttgtattcaatgtgatcaaaaacaggtcgaggtggatcacgagcatggagtagtgttcggccaatgaacggtgggatggaaacatcaaggc |
45410055 |
T |
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| Q |
121 |
cacgagctacatctgaccatgaattgatgaagtgaagaccagatgctccatctgctacatgatgttgcataccaacgcctaacgatactcctccgcattt |
220 |
Q |
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| T |
45410054 |
cacgagctacatctgaccatgaattgatgaagtgaagaccagatgctccatctgctacatgatgttgcataccaacgcctaacgatactcctccgcattt |
45409955 |
T |
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| Q |
221 |
gaaatgtgttacctgcatgca |
241 |
Q |
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| T |
45409954 |
gaaatgtgttacctgcatgca |
45409934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 126; Significance: 4e-65; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 21 - 238
Target Start/End: Complemental strand, 1130124 - 1129907
Alignment:
| Q |
21 |
ggtggaggcttgtattcaatgtgatcaaaaacaggtcgaggtggatcacgagcatggagtagtgttcggccaatgaacggtgggatggaaacatcaaggc |
120 |
Q |
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| T |
1130124 |
ggtggaggcttgtattcgatgtgatcgaaaacaggtcggggaggatcgcgggcacggagtagtgtccggtcaatgaatggtggcatggaaacgtctaggc |
1130025 |
T |
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| Q |
121 |
cacgagctacatctgaccatgaattgatgaagtgaagaccagatgctccatctgctacatgatgttgcataccaacgcctaacgatactcctccgcattt |
220 |
Q |
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| T |
1130024 |
cacgagctacatctgaccatgtattgatgaaatgaagaccagaagctccatctgctacatgatgttgcataccaacaccaagtgagactcctccacattt |
1129925 |
T |
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| Q |
221 |
gaaatgtgttacctgcat |
238 |
Q |
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| T |
1129924 |
gaaatatgttacctgcat |
1129907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 177
Target Start/End: Complemental strand, 1109550 - 1109394
Alignment:
| Q |
21 |
ggtggaggcttgtattcaatgtgatcaaaaacaggtcgaggtggatcacgagcatggagtagtgttcggccaatgaacggtgggatggaaacatcaaggc |
120 |
Q |
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|||||||| |||||||| ||||| || |||| ||||| || ||||| | |||| || ||| ||| | ||||||| ||||| ||||||||||| |||| |
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| T |
1109550 |
ggtggaggtttgtattcgatgtggtcgaaaatgggtcgtggcggatcgcaagcacggggtactgtcctttcaatgaatggtggaatggaaacatctaggc |
1109451 |
T |
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| Q |
121 |
cacgagctacatctgaccatgaattgatgaagtgaagaccagatgctccatctgcta |
177 |
Q |
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| T |
1109450 |
cacgagttacatctaaccatatattgatgaagtgaagaccagaagttccatctgcta |
1109394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 34 - 237
Target Start/End: Original strand, 31965751 - 31965954
Alignment:
| Q |
34 |
attcaatgtgatcaaaaacaggtcgaggtggatcacgagcatggagtagtgttcggccaatgaacggtgggatggaaacatcaaggccacgagctacatc |
133 |
Q |
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|||||| ||||||||||| ||||| || ||||| || |||||||||||||| || |||| || |||||||||||| |||| || ||||||| |||||| |
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| T |
31965751 |
attcaacgtgatcaaaaattggtcgtggcggatcgcgggcatggagtagtgtccgatcaataaatggtgggatggaagcatctagaccacgagttacatc |
31965850 |
T |
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| Q |
134 |
tgaccatgaattgatgaagtgaagaccagatgctccatctgctacatgatgttgcataccaacgcctaacgatactcctccgcatttgaaatgtgttacc |
233 |
Q |
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|||||||| |||||||||||||| | |||| |||||||| ||||||| ||| ||||| ||||| || | || |||||||| |||||||| | ||||||| |
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| T |
31965851 |
tgaccatgtattgatgaagtgaaaagcagaagctccatcggctacataatggtgcatcccaacaccaagtgagactcctccacatttgaagtatgttacc |
31965950 |
T |
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| Q |
234 |
tgca |
237 |
Q |
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|||| |
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| T |
31965951 |
tgca |
31965954 |
T |
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