View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2763_high_3 (Length: 575)
Name: NF2763_high_3
Description: NF2763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2763_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 10 - 318
Target Start/End: Original strand, 5192465 - 5192777
Alignment:
| Q |
10 |
gcataggccagtcgttgtgtctcatgcgtaagctagaaaaaatatacctaggcaagctcgtcacaccacaacgagatcgcgtagaatcatataagttaac |
109 |
Q |
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| T |
5192465 |
gcataggccagtcgttgtgtctcatgcgtaatctaaaaaaaatatacctaggcaagctcgtcacaccacaacgagatcgcctagaatcacacaagttaac |
5192564 |
T |
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| Q |
110 |
gtcaaggttatatatagatgtcttcataaaaaatgtaggtatggatattagggattcaatggctttgatttcaaaactcaaaagaatgacaaagac--at |
207 |
Q |
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| T |
5192565 |
gtcaaggttatgtatagatgtcttcataaaaaatgtaggtatggattttagggattcaatggctttgatttcaaaactcaaaagaatgacaaagacatat |
5192664 |
T |
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| Q |
208 |
ataaaggtctaaaacaagataatatcctcaaagacaaacattaacaacaaaatgagacta---ccaatacttatttttccaaaaatacaagacatctctc |
304 |
Q |
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| T |
5192665 |
ataaaggtctaaaacaagataata-cctcaaagacaaacattaacaacaaaatgagactaccgccaatacttatttttccaaaaatacaagacatctctc |
5192763 |
T |
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| Q |
305 |
tctattggacactt |
318 |
Q |
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| T |
5192764 |
tctattggacactt |
5192777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 343 - 561
Target Start/End: Original strand, 5192790 - 5193008
Alignment:
| Q |
343 |
tggaatgttacaattcctcccttatgtctggaaacacatgcctccctaaattaaaattctggcaaatccttctatttcacagttgaatacacatgtatat |
442 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |
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| T |
5192790 |
tggaatgttacaattcctcccttatgtctggaaacacatgcctccctaaattaaaattctggcaaatccttatatttcacatttgaatacacatgtatat |
5192889 |
T |
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| Q |
443 |
atacattaataccattcacacgtacaattgtttaattaattacatggaaatccatgcaggtatatacgttagtaagaataacaatttccgtgagaataaa |
542 |
Q |
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| T |
5192890 |
atacattaataccattcacacgtacaattgtttaattaattacatggaaatccatgcaggtatatacgttagtaagaatagcaatttccgtgagaataaa |
5192989 |
T |
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| Q |
543 |
gccactaaaagttagaact |
561 |
Q |
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| T |
5192990 |
gccactaaaagttagaact |
5193008 |
T |
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