View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2763_high_4 (Length: 484)
Name: NF2763_high_4
Description: NF2763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2763_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 18 - 471
Target Start/End: Original strand, 51547990 - 51548443
Alignment:
| Q |
18 |
aggagcagagaagcatcaagcagttgcattaagagtgaatgcagacgtaacagctttttacaaatgtgcaatgtatggttaccaagacacactttatgtt |
117 |
Q |
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| T |
51547990 |
aggaccagagaagcatcaagcagttgcattaagagtgaacgcagacgtaacagctttttacaaatgtgcaatgtatggttaccaagacacactttatgtt |
51548089 |
T |
|
| Q |
118 |
cactcatttagacaattctatagagagtgtgatatttttgggaccatagattacatatttggaaatgcagcagtagttttacaagcatgtaatattatat |
217 |
Q |
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| T |
51548090 |
cactcatttagacaattctatagagagtgtgacatttttgggaccatagattacatatttggaaatgcagcagtagttttacaagcatgtaacattatat |
51548189 |
T |
|
| Q |
218 |
caagaatgccattacctaaccaatacactgtcatcactgcacagtcaagagattcacctgatgaagacactggcatctcaatccaaaactgttcaatttt |
317 |
Q |
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| T |
51548190 |
caagaatgccattacctaaccaatacactgtaatcactgcacagtcaagagattcacctgatgaagacactggcatctcaatccaaaactgttcaatttt |
51548289 |
T |
|
| Q |
318 |
agctactactgatttgtataacaactctaacaacatcaagagttaccttggaaggccttggagggtttattctaggactgttttcattgagtcttacatt |
417 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51548290 |
agctactactgatttgtataacaactataacaacatcaagagttaccttggaaggccttggagggtttattctaggactgttttcattgagtcttacatt |
51548389 |
T |
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| Q |
418 |
gatgtgttcattgatccaatgggatggacgaaatggtcttctgatgatgataaa |
471 |
Q |
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| T |
51548390 |
gatgtgttcattgatccaatgggatggacgaaatggtcttctgatgatgataaa |
51548443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 113; Significance: 5e-57; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 23 - 455
Target Start/End: Original strand, 19476428 - 19476860
Alignment:
| Q |
23 |
cagagaagcatcaagcagttgcattaagagtgaatgcagacgtaacagctttttacaaatgtgcaatgtatggttaccaagacacactttatgttcactc |
122 |
Q |
| |
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||||||| ||||||||||||||||||||||| |||||||| ||||||| ||||||||||| ||||| |||||||||||||||||||||||||| ||||| |
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| T |
19476428 |
cagagaaacatcaagcagttgcattaagagtaaatgcagatttaacagcattttacaaatgcgcaatttatggttaccaagacacactttatgtccactc |
19476527 |
T |
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| Q |
123 |
atttagacaattctatagagagtgtgatatttttgggaccatagattacatatttggaaatgcagcagtagttttacaagcatgtaatattatatcaaga |
222 |
Q |
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||| ||||||||||| | || || || |||| ||||| ||||||| ||||||||| || || |||||||| ||||||| ||| | || |||||||| |
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| T |
19476528 |
attcagacaattctaccgcgaatgcgacatttacgggacaatagatttcatatttggtaacgccgcagtagtattacaagaatgcgacatcgtatcaaga |
19476627 |
T |
|
| Q |
223 |
atgccattacctaaccaatacactgtcatcactgcacagtcaagagattcacctgatgaagacactggcatctcaatccaaaactgttcaattttagcta |
322 |
Q |
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|||||||||||| |||| || || || || || || ||| | ||| ||||| |||||||| || || ||||||||||| ||||| ||| | |||| |
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| T |
19476628 |
atgccattacctggtcaatttacagttataaccgcgcaatcacgggataaccctgacgaagacacgggaatttcaatccaaaattgttcgattatcgcta |
19476727 |
T |
|
| Q |
323 |
ctactgatttgtataacaactctaacaacatcaagagttaccttggaaggccttggagggtttattctaggactgttttcattgagtcttacattgatgt |
422 |
Q |
| |
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| ||| | ||| ||||||| || |||||||||||||||| ||||| |||||||||| |||||| || ||||| ||||||||||| ||||||| |
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| T |
19476728 |
cggatgagctttattcaaactctagtaaggtcaagagttaccttgggaggccgtggagggttttttctagaacggttttaattgagtcttatattgatga |
19476827 |
T |
|
| Q |
423 |
gttcattgatccaatgggatggacgaaatggtc |
455 |
Q |
| |
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|| ||||||| || ||| ||||| |||||||| |
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| T |
19476828 |
ttttattgatcaaaagggttggaccaaatggtc |
19476860 |
T |
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