View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2763_high_6 (Length: 425)
Name: NF2763_high_6
Description: NF2763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2763_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 17 - 412
Target Start/End: Complemental strand, 55286807 - 55286412
Alignment:
| Q |
17 |
catactaacactgacacgttgaaaccagtaattatttcgaaaattgatataattgaatgtgatcacatgtgttggtcagtgtcgtgttggtgttggatat |
116 |
Q |
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| T |
55286807 |
catactaacactgacaccttgaaaccagtaattatttcgaaaattgacataattgaatgtgatcacatgtgttggtcagtgtcgtgttggtgttggatat |
55286708 |
T |
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| Q |
117 |
tgacatgtgtcaaacatcgtacacgttttctaccagaagtattgatgatagagagattttaaatatagtaatatgtaatgataaagaaacctgaaaacag |
216 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55286707 |
tgacatgtgtcaaacatcgtacacgctttctaccagaagtattgatgctagagagattttaaatatagtaatatgtaatgataaagaaacctgaaaacag |
55286608 |
T |
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| Q |
217 |
ataaaatcaggggaatgcatcaaaacaagatcaccaatagctttcatcctcttctccaactccaaatcctcacggaaccaaacattgtaactcaaaatct |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55286607 |
ataaaatcaggggaatgcatcaaaacaagatcaccaatagctttcatcctcttctccaactccaaatcctcacggaaccaaacattgtaactcaaaatct |
55286508 |
T |
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| Q |
317 |
tcaacgaactaacacctttcccagaatcaaccctctctagtggtttcgcaaaatgttcatgggaatcaaaaatatcaacagcccttttggaatcct |
412 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
55286507 |
tcaacgaactaacacctttaccagaatcaaccctctctagtggtttcgcaaaatgttcataggaatcaaaaatatcaacagcccttttggaatcct |
55286412 |
T |
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