View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2763_low_1 (Length: 681)
Name: NF2763_low_1
Description: NF2763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2763_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 599; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 599; E-Value: 0
Query Start/End: Original strand, 18 - 668
Target Start/End: Original strand, 36330537 - 36331196
Alignment:
| Q |
18 |
atctttagtttattgtgatcaacaaaatttggattaagaagatcctctatggtaatgagtccatcaccacacacaacaacctcgcaactaggatcaaaag |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36330537 |
atctttagtttattgtgatcaacaaaatttggattaagaagatcctctatggtaatgagtccatcaccacacacaacaacctcgcaactaggatcaaaag |
36330636 |
T |
|
| Q |
118 |
catcactcatcatcaacttcttattctctgcattaccttgaaaagtctcagtaggcataccagtaattccttgtatcatcctcacatgtcttccctcagc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
36330637 |
catcactcatcatcaacttcttattctctgcattaccttgaaaagtctcagtaggcataccagtaattccttctatcatcctcacatgtcttccctcagc |
36330736 |
T |
|
| Q |
218 |
atttgcatccctctttgttccaatgtaacaatcatcgtcattctcgaactcattatcagattgtacattctcatcctaaaaat------agaaatagaag |
311 |
Q |
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| T |
36330737 |
atttgcatccctctttgttccaatgtaacaatcatcgtcattctcgaactcattatcagattgtacattctcatcctaaaaatagaaatagaaatagaag |
36330836 |
T |
|
| Q |
312 |
ggatgagttgcctgaaacatgaataattatattggcttatttgactttatcgtagtttatacatatgatcgattaatgataattacttaacgaaactatt |
411 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
36330837 |
ggatgagttgcctgaaacatgaagaattatattggcttatttgactttatcgtagtttatacatatgatcgattaatgataattacttaaggaaactatt |
36330936 |
T |
|
| Q |
412 |
tctatccaaacagagcgttaaaaggaaaagctaccttgaaatgacaaggaatgcgatcctttacggaaacagggtcgtagcgcttattcttcatagactc |
511 |
Q |
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| T |
36330937 |
tctatccaaacagagcgttaaaaggaaaagctaccttgaaatgagaaggaatgcgatcctttacggaaacagggtcgtagcgcttattcttcatagactc |
36331036 |
T |
|
| Q |
512 |
ttcctctgcatcttgttcctcgtattcata---aacatcagtggtggcttcatcgaaatggacattggtttgaatctgtttgttcaaagatgaaggcaaa |
608 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
36331037 |
ttcctctgcatcttgttcctcgtattcataaacaacatcagtggtggcttcatcgaaatggacattggtttgaatctgtttgttcaaagatgaaggcgaa |
36331136 |
T |
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| Q |
609 |
cgaggattggttttcgactttttacttcggaggttggtgccgttcatctgttttcgtttc |
668 |
Q |
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| T |
36331137 |
cgaggattggttttcgactttttacttcggaggttggtgtcgttcatctgttttcgtttc |
36331196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 578 - 614
Target Start/End: Original strand, 44371826 - 44371862
Alignment:
| Q |
578 |
ttgaatctgtttgttcaaagatgaaggcaaacgagga |
614 |
Q |
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|||||||| ||| |||||||||||||||||||||||| |
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| T |
44371826 |
ttgaatctcttttttcaaagatgaaggcaaacgagga |
44371862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 578 - 614
Target Start/End: Original strand, 44380681 - 44380717
Alignment:
| Q |
578 |
ttgaatctgtttgttcaaagatgaaggcaaacgagga |
614 |
Q |
| |
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|||||||| ||| |||||||||||||||||||||||| |
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| T |
44380681 |
ttgaatctcttttttcaaagatgaaggcaaacgagga |
44380717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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