View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2763_low_12 (Length: 266)
Name: NF2763_low_12
Description: NF2763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2763_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 19 - 255
Target Start/End: Original strand, 23896194 - 23896430
Alignment:
| Q |
19 |
aggtaggagatggctgcaagcaatcaaataaatagttagagtaagtttttacgtgtccaataatagcaatagtaatgataataatcgaaagaaaaagatt |
118 |
Q |
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| T |
23896194 |
aggtaggagatggctgcaagcaatcaaataaatggttcaagtaagtttttacgtgtccaataatagcaatagtaatgataataatcgaaagaaaaagatt |
23896293 |
T |
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| Q |
119 |
ttaccctattctcggggtggaagcaagggtgaatgacgccgttcatgtcaaggtaaaggttgtcgtattcattgttgttagggtttttcatacttgtgtt |
218 |
Q |
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| T |
23896294 |
ttaccctattctcggggtggaagcaagggtgaatgacgccgttcatgtcaaggtaaaggttgtcgtattcattgttgttagggtttttcatacttgtgtt |
23896393 |
T |
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| Q |
219 |
gacagggatttgaatgtcatcgataaccacaggttct |
255 |
Q |
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| T |
23896394 |
gacagggatttgaatgccatcgataaccacaggttct |
23896430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 19 - 255
Target Start/End: Original strand, 23184161 - 23184396
Alignment:
| Q |
19 |
aggtaggagatggctgcaagcaatcaaataaatagttagagtaagtttttacgtgtccaataatagcaatagtaatgataataatcgaaagaaaaagatt |
118 |
Q |
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||||||||||||||||||||||||||||||||| || | |||| ||||||||||||| |||||||||||||||||| ||||||||||||||| ||| ||| |
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| T |
23184161 |
aggtaggagatggctgcaagcaatcaaataaatcgtca-agtacgtttttacgtgtctaataatagcaatagtaatcataataatcgaaagagaaatatt |
23184259 |
T |
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| Q |
119 |
ttaccctattctcggggtggaagcaagggtgaatgacgccgttcatgtcaaggtaaaggttgtcgtattcattgttgttagggtttttcatacttgtgtt |
218 |
Q |
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| T |
23184260 |
ttaccctattctcggggtggaagcaagggtgaatgacgccgttcatgtcaaggtaaaggttgtcgtattcattgttgttagggtttttcatacttgtgtt |
23184359 |
T |
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| Q |
219 |
gacagggatttgaatgtcatcgataaccacaggttct |
255 |
Q |
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| T |
23184360 |
gacagggatttgaatgccatcgataaccactggttct |
23184396 |
T |
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