View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2764_high_10 (Length: 228)
Name: NF2764_high_10
Description: NF2764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2764_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 123; Significance: 2e-63; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 41 - 188
Target Start/End: Original strand, 39888676 - 39888823
Alignment:
| Q |
41 |
agatattttagaaacaaataaaacaaaatgacatcattaagtgatttgattggatgtatgtatnnnnnnngtttcatagtgttggtgcatagaaatcaat |
140 |
Q |
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| T |
39888676 |
agatattttagaaacaaataaaacaaaatgacatcatgaagtgatttgattggatgtatgtataaaaaaagtttcatagtgttggtgcatagaaatcaat |
39888775 |
T |
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| Q |
141 |
ctctatgtaaaagaggatcaagtatgttatatatcacaaaaggcaaaa |
188 |
Q |
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| T |
39888776 |
ctctatgtaaaagaggatcaagtatgttatatatcacaaaaggcaaaa |
39888823 |
T |
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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 101
Target Start/End: Complemental strand, 10484799 - 10484724
Alignment:
| Q |
26 |
tgtagatatttgtggagatattttagaaacaaataaaacaaaatgacatcattaagtgatttgattggatgtatgt |
101 |
Q |
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| T |
10484799 |
tgtagatatttgtggagataatttacaaacaaatgtaacaaaatgaaatcattgaatggtatgattggatgcatgt |
10484724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 12671654 - 12671706
Alignment:
| Q |
25 |
atgtagatatttgtggagatattttagaaacaaataaaacaaaatgacatcat |
77 |
Q |
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| T |
12671654 |
atgtagatagttgtagagatattttaggaacaaatataacaaagtgatatcat |
12671706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 29643939 - 29643991
Alignment:
| Q |
25 |
atgtagatatttgtggagatattttagaaacaaataaaacaaaatgacatcat |
77 |
Q |
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| T |
29643939 |
atgtagatatttgcggagatgttttagaaactaacaaaacaaagtgacatcat |
29643991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 96
Target Start/End: Original strand, 39842554 - 39842619
Alignment:
| Q |
31 |
atatttgtggagatattttagaaacaaataaaacaaaatgacatcattaagtgatttgattggatg |
96 |
Q |
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| T |
39842554 |
atatttgtggagatattttaaaaactaatatagtaaagtgatattattatgtgatttgattggatg |
39842619 |
T |
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