View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2764_high_9 (Length: 236)

Name: NF2764_high_9
Description: NF2764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2764_high_9
NF2764_high_9
[»] chr5 (3 HSPs)
chr5 (1-155)||(36560704-36560858)
chr5 (58-147)||(9991881-9991971)
chr5 (152-192)||(9991665-9991705)
[»] chr3 (2 HSPs)
chr3 (28-157)||(36432590-36432719)
chr3 (154-192)||(36433082-36433120)
[»] chr6 (2 HSPs)
chr6 (1-151)||(33582724-33582876)
chr6 (152-192)||(33582515-33582555)
[»] chr7 (5 HSPs)
chr7 (99-155)||(28755919-28755975)
chr7 (1-103)||(47535402-47535504)
chr7 (99-155)||(28755651-28755707)
chr7 (46-147)||(37127117-37127218)
chr7 (152-192)||(28756142-28756182)
[»] chr2 (2 HSPs)
chr2 (35-151)||(32983466-32983574)
chr2 (44-103)||(24489510-24489569)
[»] scaffold0006 (2 HSPs)
scaffold0006 (1-127)||(148082-148213)
scaffold0006 (152-197)||(148340-148385)
[»] chr1 (3 HSPs)
chr1 (1-127)||(13658321-13658452)
chr1 (152-197)||(13658579-13658624)
chr1 (1-103)||(42138592-42138694)


Alignment Details
Target: chr5 (Bit Score: 98; Significance: 2e-48; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 36560858 - 36560704
Alignment:
Q  1 cagtggcggatcttgatttannnnnnngggggtgccaaacagttatggagtatatattaaaatgattcaaataatagcaatagaagtcaagtgctttggt 100  Q
    ||||||||||||||||||||        ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||    
T  36560858 cagtggcggatcttgatttattttcttaggggtaccaaacagttatggaatatatattaaaatgattcaaataatagcaatagaagtcaagtgctctagt 36560759  T
Q  101 ggtatgtattgctgcaaacatacctggttgatgcaggtttgagtcccatgtggga 155  Q
    ||||||||||||| |||| ||||||||||| ||||||||||||| ||||||||||    
T  36560758 ggtatgtattgcttcaaaaatacctggttggtgcaggtttgagtgccatgtggga 36560704  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 58 - 147
Target Start/End: Complemental strand, 9991971 - 9991881
Alignment:
Q  58 taaaatgattcaaataatagcaatagaagtcaagtgctttggtggtatgtattgctgcaaacatacct-ggttgatgcaggtttgagtccc 147  Q
    ||||||||||||||||||||| | |||||| ||||||| ||||||| |||||| | | |||||||| | || || ||||||||||||||||    
T  9991971 taaaatgattcaaataatagctaaagaagttaagtgctctggtggtttgtattcccgtaaacatacttgggctggtgcaggtttgagtccc 9991881  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 192
Target Start/End: Complemental strand, 9991705 - 9991665
Alignment:
Q  152 gggatgccatggcacctgcttgcccttgagaagatccgccc 192  Q
    ||||||||||||||| ||| |||||| ||||||||||||||    
T  9991705 gggatgccatggcacttgcctgccctagagaagatccgccc 9991665  T

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Target: chr3 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 28 - 157
Target Start/End: Original strand, 36432590 - 36432719
Alignment:
Q  28 gggggtgccaaacagttatggagtatatattaaaatgattcaaataatagcaatagaagtcaagtgctttggtggtatgtattgctgcaaacatacctgg 127  Q
    |||||| ||||||||||||| | |||||||||||||||||||||  ||| |||||||||||||||||| || |||||||||||||||||||||||| |||    
T  36432590 gggggtaccaaacagttatgaaatatatattaaaatgattcaaagtataccaatagaagtcaagtgctatgctggtatgtattgctgcaaacatacatgg 36432689  T
Q  128 ttgatgcaggtttgagtcccatgtgggatg 157  Q
    ||| ||||||||||||||||||||||||||    
T  36432690 ttggtgcaggtttgagtcccatgtgggatg 36432719  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 192
Target Start/End: Original strand, 36433082 - 36433120
Alignment:
Q  154 gatgccatggcacctgcttgcccttgagaagatccgccc 192  Q
    ||||||||||||||||| |||||||||||||||| ||||    
T  36433082 gatgccatggcacctgcctgcccttgagaagatctgccc 36433120  T

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Target: chr6 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 33582876 - 33582724
Alignment:
Q  1 cagtggcggatcttgatttannnnnnngggggtgccaaacagttatggagtatatat--taaaatgattcaaataatagcaatagaagtcaagtgctttg 98  Q
    ||||||||||||||||||||       |||||||||||||||||||||| |||||||  |||||||||||||  ||||||||||||| ||||||||| ||    
T  33582876 cagtggcggatcttgatttatttttttgggggtgccaaacagttatggaatatatatattaaaatgattcaacaaatagcaatagaactcaagtgctatg 33582777  T
Q  99 gtggtatgtattgctgcaaacatacctggttgatgcaggtttgagtcccatgt 151  Q
    |||||||||||||||||||| | |||||| || ||||||||||||||||||||    
T  33582776 gtggtatgtattgctgcaaaaacacctggctgttgcaggtttgagtcccatgt 33582724  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 152 - 192
Target Start/End: Complemental strand, 33582555 - 33582515
Alignment:
Q  152 gggatgccatggcacctgcttgcccttgagaagatccgccc 192  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  33582555 gggatgccatggcacctgcctgcccttgagaagatccgccc 33582515  T

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Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 99 - 155
Target Start/End: Original strand, 28755919 - 28755975
Alignment:
Q  99 gtggtatgtattgctgcaaacatacctggttgatgcaggtttgagtcccatgtggga 155  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  28755919 gtggtatgtattgctgcaaacatgcctggttggtgcaggtttgagtcccatgtggga 28755975  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 47535504 - 47535402
Alignment:
Q  1 cagtggcggatcttgatttannnnnnngggggtgccaaacagttatggagtatatattaaaatgattcaaataatagcaatagaagtcaagtgctttggt 100  Q
    |||||||||||||||| |||       |||||| || |||  ||||||| |||||||||||||||||||||||||||||| | |||| ||||||||||||    
T  47535504 cagtggcggatcttgacttattttcttgggggtaccgaactattatggaatatatattaaaatgattcaaataatagcaaaataagttaagtgctttggt 47535405  T
Q  101 ggt 103  Q
    |||    
T  47535404 ggt 47535402  T

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Target: chr7; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 99 - 155
Target Start/End: Original strand, 28755651 - 28755707
Alignment:
Q  99 gtggtatgtattgctgcaaacatacctggttgatgcaggtttgagtcccatgtggga 155  Q
    |||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||    
T  28755651 gtggtatgtattgctgcaaacatgtctggttggtgcaggtttgagtcccatgtggga 28755707  T

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Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 46 - 147
Target Start/End: Original strand, 37127117 - 37127218
Alignment:
Q  46 tggagtatatattaaaatgattcaaataatagcaatagaagtcaagtgctttggtggtatgtattgctgcaaacatacctggttgatgcaggtttgagtc 145  Q
    |||| |||||||||||||||||||  ||||||||| |||||| ||||||| ||||||| ||  |||||| ||||||   | |||| ||||||||||||||    
T  37127117 tggaatatatattaaaatgattcatttaatagcaaaagaagttaagtgctctggtggtctgatttgctgtaaacatgtgtcgttggtgcaggtttgagtc 37127216  T
Q  146 cc 147  Q
    ||    
T  37127217 cc 37127218  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 192
Target Start/End: Original strand, 28756142 - 28756182
Alignment:
Q  152 gggatgccatggcacctgcttgcccttgagaagatccgccc 192  Q
    ||||||||||||||||||| ||||||| |||||||| ||||    
T  28756142 gggatgccatggcacctgcctgccctttagaagatcagccc 28756182  T

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Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 35 - 151
Target Start/End: Original strand, 32983466 - 32983574
Alignment:
Q  35 ccaaacagttatggagtatatattaaaatgattcaaataatagcaatagaagtcaagtgctttggtggtatgtattgctgcaaacatacctggttgatgc 134  Q
    ||||||||||||| | ||||||||||||||||||||  ||||||| ||||| ||||||||        ||||||||||||||||||||||||| || |||    
T  32983466 ccaaacagttatgaaatatatattaaaatgattcaacaaatagcagtagaactcaagtgc--------tatgtattgctgcaaacatacctggctggtgc 32983557  T
Q  135 aggtttgagtcccatgt 151  Q
    |||||  ||||||||||    
T  32983558 aggttcaagtcccatgt 32983574  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 103
Target Start/End: Complemental strand, 24489569 - 24489510
Alignment:
Q  44 tatggagtatatattaaaatgattcaaataatagcaatagaagtcaagtgctttggtggt 103  Q
    |||||| |||||||||||||||||||| ||| | ||| |||||| |||||||||||||||    
T  24489569 tatggaatatatattaaaatgattcaagtaacaacaaaagaagttaagtgctttggtggt 24489510  T

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Target: scaffold0006 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 148082 - 148213
Alignment:
Q  1 cagtggcggatcttgatttannnnnnngggggtgccaaacagttatggagta-----tatattaaaatgattcaaataatagcaatagaagtcaagtgct 95  Q
    ||||||||||| ||||||||       |||||| ||||||||||||||| ||     ||||||||||||||||||  ||||||| ||||| ||||||| |    
T  148082 cagtggcggatgttgatttattttcttgggggtaccaaacagttatggaatatatattatattaaaatgattcaataaatagcagtagaactcaagtgtt 148181  T
Q  96 ttggtggtatgtattgctgcaaacatacctgg 127  Q
     ||||||| |||||||| ||||||||||||||    
T  148182 ctggtggtttgtattgccgcaaacatacctgg 148213  T

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Target: scaffold0006; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 152 - 197
Target Start/End: Original strand, 148340 - 148385
Alignment:
Q  152 gggatgccatggcacctgcttgcccttgagaagatccgcccttgtt 197  Q
    ||||||||||||||||||| ||||||||||||||||||||| ||||    
T  148340 gggatgccatggcacctgcctgcccttgagaagatccgcccctgtt 148385  T

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Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 13658321 - 13658452
Alignment:
Q  1 cagtggcggatcttgatttannnnnnngggggtgccaaacagttatggagta-----tatattaaaatgattcaaataatagcaatagaagtcaagtgct 95  Q
    ||||||||||| ||||||||       |||||| ||||||||||||||| ||     ||||||||||||||||||  ||||||| ||||| ||||||| |    
T  13658321 cagtggcggatgttgatttattttcttgggggtaccaaacagttatggaatatatattatattaaaatgattcaataaatagcagtagaactcaagtgtt 13658420  T
Q  96 ttggtggtatgtattgctgcaaacatacctgg 127  Q
     ||||||| |||||||| ||||||||||||||    
T  13658421 ctggtggtttgtattgccgcaaacatacctgg 13658452  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 152 - 197
Target Start/End: Original strand, 13658579 - 13658624
Alignment:
Q  152 gggatgccatggcacctgcttgcccttgagaagatccgcccttgtt 197  Q
    ||||||||||||||||||| ||||||||||||||||||||| ||||    
T  13658579 gggatgccatggcacctgcctgcccttgagaagatccgcccctgtt 13658624  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 42138592 - 42138694
Alignment:
Q  1 cagtggcggatcttgatttannnnnnngggggtgccaaacagttatggagtatatattaaaatgattcaaataatagcaatagaagtcaagtgctttggt 100  Q
    ||||||||||||||||||||       ||||||  |||||  ||||||| ||||||||||||||||| |  | ||||||| | |||| ||||||||||||    
T  42138592 cagtggcggatcttgatttattttcttgggggtatcaaactattatggaatatatattaaaatgattaaggtgatagcaaaacaagttaagtgctttggt 42138691  T
Q  101 ggt 103  Q
    |||    
T  42138692 ggt 42138694  T

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