View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2764_low_3 (Length: 480)
Name: NF2764_low_3
Description: NF2764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2764_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 200 - 463
Target Start/End: Complemental strand, 29789716 - 29789454
Alignment:
| Q |
200 |
taggatcgtttttgctttgaaaggccattgtcaaagcctatagaactcatccactactaatgaaaagtttttcttcatccaattaacctctttctttcac |
299 |
Q |
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| T |
29789716 |
taggatcgtttttgctttgaaaggccattgtcaaagcctatagaactcatccactactaatgaaaagtttttcttcatccaattaacctctttctttcac |
29789617 |
T |
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| Q |
300 |
cacacaaaacaatatgataggaaagataataatttgtgannnnnnnnnnnngaccctttgattttatttattgcagtgcagctgatccgtcaatagaata |
399 |
Q |
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| T |
29789616 |
cacacaaaacaatatgataggaaagacaataatttgtga-tttttttttttgaccctttgattttatttattgcagtgcagctgatccgtcaatagaata |
29789518 |
T |
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| Q |
400 |
tacactagtgttgcctataaagttataagttattatctctatatcaattcaatggcttatgcat |
463 |
Q |
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| T |
29789517 |
tacactagtgttgcctataaagttataagttattatctctatatcaattcaatggcttatgcat |
29789454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 82 - 142
Target Start/End: Complemental strand, 29789836 - 29789777
Alignment:
| Q |
82 |
gattacacattactcaaactatatggaccaaaagtgtaattaaacctaataatattatatt |
142 |
Q |
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| T |
29789836 |
gattacacataactcaaactatatggatcaaa-gtgtaattaaacctaataatattatatt |
29789777 |
T |
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