View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2764_low_4 (Length: 478)
Name: NF2764_low_4
Description: NF2764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2764_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 10 - 242
Target Start/End: Original strand, 28440682 - 28440914
Alignment:
| Q |
10 |
attattctccatataatcatagactaaatatctttttgctccttcaacacaacaccctttaaaaccaacaagattttggtgctttatatttgctagtgca |
109 |
Q |
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| T |
28440682 |
attattctccatataatcatagactaaatatctttttgctccttcaacacaacaccctttaaaaccaacaagattttggtgctttatatttgatagtgca |
28440781 |
T |
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| Q |
110 |
gccaattctgcaacaaattccctctctcctctcatagattcagtctcaacagaaagcactttcactgccacaaatgatccatccatgagcctccccttta |
209 |
Q |
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| T |
28440782 |
gccaattctgcaacaaattccctctctcctctcatagattcagtctcaacagaaagcactttcactgccacaaatgatccatccatgagcctccccttta |
28440881 |
T |
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| Q |
210 |
aaagtcaaatcaacactaatcagttttccatca |
242 |
Q |
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| T |
28440882 |
aaagtcaaatcaacactaatcagttttccatca |
28440914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 266 - 429
Target Start/End: Original strand, 28440939 - 28441102
Alignment:
| Q |
266 |
gctaattttcattagaatgtaatatattatcaccttataaacagagccaaatccaccttgaccaattttgtgatcaaaattattagtagcagatttcaat |
365 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28440939 |
gctaattttcattagaatgtaatatattatcaccttataaacagagccaaatccaccttgaccaattttgtgatcaaaattattagtagcagatttcaat |
28441038 |
T |
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| Q |
366 |
tggttataagtgaatacacgaaaacttccatcattaatatctccctcagcataatctgcatatg |
429 |
Q |
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| T |
28441039 |
tggttataagtgaatacacgaaaacttccatcattaatatctccctcagcataatctgcatatg |
28441102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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